ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdp12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SP63_STRPU (Q07929) 63 kDa sperm flagellar membrane protein prec... 31 3.3
2MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-r... 30 5.7
3SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precurs... 30 5.7
4PYRG_MYCPU (Q98PQ3) CTP synthase (EC 6.3.4.2) (UTP--ammonia liga... 30 7.4
5DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7) 30 7.4

>SP63_STRPU (Q07929) 63 kDa sperm flagellar membrane protein precursor|
          Length = 470

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = +2

Query: 464 AACRVFSGVVADLLNRVYQAPEPDIVDPYLKEGEEQHGIMQWNLMEWVYRGRL 622
           AA    +  V D L+ VYQA    + D YL       G   W + EW+YRGRL
Sbjct: 111 AAFASLAADVEDALDTVYQAST--MADIYL-------GSEVWGVPEWLYRGRL 154



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>MTG8R_XENLA (Q9IAB2) Protein CBFA2T2 (MTG8-like protein) (MTG8-related protein|
           1)
          Length = 586

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 163 EEDTAPSETHVNKLCIIIVAPRTQPVIPL 77
           E +TAP+E  V ++C I  APR  P + L
Sbjct: 233 ERETAPAEPPVKRVCTISPAPRHSPALSL 261



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>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II)
          Length = 833

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 567 SSPSFRYGSTMSG-SGAWYTRLRRSATTPEKTLH-AAGPSLSPS 442
           SS S R  S++ G SGA Y R+ R    P +T + A G SLSPS
Sbjct: 597 SSDSERSASSVEGPSGALYARVARREARPARTRNEAGGLSLSPS 640



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>PYRG_MYCPU (Q98PQ3) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 539

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -2

Query: 640 PFYLGIQPSPVYPFHQVPLHNAMLFLSFLQVWVHN 536
           PFYLG+Q  P   F   PL    LF SFL+V + N
Sbjct: 506 PFYLGVQYHP--EFTSRPLKPNPLFTSFLRVLIKN 538



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>DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 969

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -1

Query: 359 FAFSRSVSGNSIQDHITYLGVSMHAEAWSSCRIVMDYAELRY 234
           +A   SV+   + D I YLG+ +++  +++ +  +DY +L+Y
Sbjct: 841 YAKDMSVNDRYLDDEIQYLGIDLNSLNYANYKTEIDYNKLKY 882


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,199,813
Number of Sequences: 219361
Number of extensions: 2385615
Number of successful extensions: 7094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7077
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7309604013
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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