ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdp05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related p... 33 0.81
2TRPM3_HUMAN (Q9HCF6) Transient receptor potential cation channel... 31 4.0
3FUMC_WIGBR (Q8D2L3) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 25 4.1
4AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10)... 30 9.0

>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)|
           (Forkhead-related transcription factor 2) (FREAC-2)
           (Forkhead-related activator 2)
          Length = 444

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 503 RCCSPVPGALLGS--SSAPAMGGTSLGCSLTTVETSSLSPTICLSRLTKS 646
           R CSPVPGAL  +  S  PA    +     TT  +SS S   C S  + S
Sbjct: 14  RACSPVPGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSASCASSSSSS 63



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>TRPM3_HUMAN (Q9HCF6) Transient receptor potential cation channel subfamily M|
            member 3 (Long transient receptor potential channel 3)
            (LTrpC3) (Melastatin-2) (MLSN2)
          Length = 1732

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
 Frame = +2

Query: 77   EEAMAPKGRSHEPTQAHHHFYQFYSRLVSKIEKM*SQLKLNISSKLKEQIYQVHHGTSCK 256
            EE M+P   +  P    H FY    +    IEK        + S  KE+   +H  TS  
Sbjct: 1345 EETMSPTSPTLMPRMRSHSFYSVNMKDKGGIEK--------LESIFKERSLSLHRATSSH 1396

Query: 257  QICTE--HAAATTECFQLLTDAEKPTN 331
             +  E    AA      ++ D+ +P++
Sbjct: 1397 SVAKEPKAPAAPANTLAIVPDSRRPSS 1423



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>FUMC_WIGBR (Q8D2L3) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 464

 Score = 25.0 bits (53), Expect(2) = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 554 AMGGTSLGCSLTTVETSSLSPTICLSRLTKSGLL 655
           A+GGT++G  L   E  SL  +  LS + K   +
Sbjct: 226 ALGGTAVGTGLNAHEKYSLKASKLLSEINKHNFI 259



 Score = 24.3 bits (51), Expect(2) = 4.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 346 QSYTNLTGCSQITDWFCL*RTDILYNLMDVLVLS 447
           Q  T LT   +++ W+C+ + +I Y    +L +S
Sbjct: 190 QDATPLTLGQEVSSWYCMLKKNIKYIKNSILCIS 223



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>AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10) (G1Pase)|
          Length = 413

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 143 FYSRLVSKIEKM*SQLKLNISSKLKEQIYQVHHGTSCKQ 259
           F  + V  +EK  SQL L+ S KL EQI       SCK+
Sbjct: 160 FRQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKE 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,274,911
Number of Sequences: 219361
Number of extensions: 1971893
Number of successful extensions: 5097
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5095
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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