Clone Name | rbasdp05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related p... | 33 | 0.81 | 2 | TRPM3_HUMAN (Q9HCF6) Transient receptor potential cation channel... | 31 | 4.0 | 3 | FUMC_WIGBR (Q8D2L3) Fumarate hydratase class II (EC 4.2.1.2) (Fu... | 25 | 4.1 | 4 | AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10)... | 30 | 9.0 |
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>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)| (Forkhead-related transcription factor 2) (FREAC-2) (Forkhead-related activator 2) Length = 444 Score = 33.1 bits (74), Expect = 0.81 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Frame = +2 Query: 503 RCCSPVPGALLGS--SSAPAMGGTSLGCSLTTVETSSLSPTICLSRLTKS 646 R CSPVPGAL + S PA + TT +SS S C S + S Sbjct: 14 RACSPVPGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSASCASSSSSS 63
>TRPM3_HUMAN (Q9HCF6) Transient receptor potential cation channel subfamily M| member 3 (Long transient receptor potential channel 3) (LTrpC3) (Melastatin-2) (MLSN2) Length = 1732 Score = 30.8 bits (68), Expect = 4.0 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Frame = +2 Query: 77 EEAMAPKGRSHEPTQAHHHFYQFYSRLVSKIEKM*SQLKLNISSKLKEQIYQVHHGTSCK 256 EE M+P + P H FY + IEK + S KE+ +H TS Sbjct: 1345 EETMSPTSPTLMPRMRSHSFYSVNMKDKGGIEK--------LESIFKERSLSLHRATSSH 1396 Query: 257 QICTE--HAAATTECFQLLTDAEKPTN 331 + E AA ++ D+ +P++ Sbjct: 1397 SVAKEPKAPAAPANTLAIVPDSRRPSS 1423
>FUMC_WIGBR (Q8D2L3) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 464 Score = 25.0 bits (53), Expect(2) = 4.1 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = +2 Query: 554 AMGGTSLGCSLTTVETSSLSPTICLSRLTKSGLL 655 A+GGT++G L E SL + LS + K + Sbjct: 226 ALGGTAVGTGLNAHEKYSLKASKLLSEINKHNFI 259 Score = 24.3 bits (51), Expect(2) = 4.1 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = +1 Query: 346 QSYTNLTGCSQITDWFCL*RTDILYNLMDVLVLS 447 Q T LT +++ W+C+ + +I Y +L +S Sbjct: 190 QDATPLTLGQEVSSWYCMLKKNIKYIKNSILCIS 223
>AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10) (G1Pase)| Length = 413 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +2 Query: 143 FYSRLVSKIEKM*SQLKLNISSKLKEQIYQVHHGTSCKQ 259 F + V +EK SQL L+ S KL EQI SCK+ Sbjct: 160 FRQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKE 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,274,911 Number of Sequences: 219361 Number of extensions: 1971893 Number of successful extensions: 5097 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4931 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5095 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)