ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdp05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470454.1| Oryza sativa (japonica cultivar-group), mRNA 107 5e-20
2dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
3dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
4gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 82 3e-12
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
7dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrol... 52 0.002
8gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.4
9gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, c... 42 2.4
10gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cance... 42 2.4
11emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 2.4
12gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, comp... 42 2.4
13gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosom... 42 2.4
14emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on ch... 42 2.4
15gb|AY109834.1| Zea mays CL7866_1 mRNA sequence 42 2.4
16gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, compl... 40 9.3
17gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital... 40 9.3
18ref|XM_418865.1| PREDICTED: Gallus gallus similar to DERP13 (der... 40 9.3
19gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, com... 40 9.3
20gb|AY702011.1| Leishmania donovani strain MHOM/IN/1983/AG83 anti... 40 9.3
21gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, com... 40 9.3
22gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, compl... 40 9.3
23gb|AC123037.4| Mus musculus BAC clone RP24-527F14 from chromosom... 40 9.3
24gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 9.3
25emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chro... 40 9.3
26emb|AL611962.6| Human DNA sequence from clone RP11-45J16 on chro... 40 9.3
27emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chr... 40 9.3
28emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chr... 40 9.3
29emb|AL445468.8| Human DNA sequence from clone RP11-74P14 on chro... 40 9.3
30emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on ch... 40 9.3
31emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chr... 40 9.3
32emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 ... 40 9.3
33emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacterioph... 40 9.3
34emb|AL935252.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 9.3
35emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 i... 40 9.3
36gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, comp... 40 9.3
37gb|DP000052.1| Sus scrofa target 126 genomic scaffold 40 9.3
38gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123... 40 9.3
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
41gb|AC126281.3| Homo sapiens cosmid clone XXcos-2173C8 from 4, co... 40 9.3
42gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chrom... 40 9.3
43gb|AF328509.1|AF328509 Homo sapiens clone 4qtel_2173c8t3 sequence 40 9.3
44gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1... 40 9.3
45gb|AC016696.8| Homo sapiens BAC clone RP11-130P22 from 2, comple... 40 9.3
46gb|AF261714.1|AF261714 Leptospira biflexa temperate bacteriophag... 40 9.3
47gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, comple... 40 9.3
48dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
49gb|AF090948.1|AF090948 Homo sapiens clone HQ0709 40 9.3
50dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
51dbj|AP006332.2| Homo sapiens genomic DNA, chromosome Un clone:CM... 40 9.3
52dbj|AP006225.1| Homo sapiens genomic DNA, chromosome Un, clone:C... 40 9.3
53gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosom... 40 9.3
54gb|AC125159.4| Mus musculus BAC clone RP24-394C23 from 6, comple... 40 9.3
55emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chro... 40 9.3
56gb|M19359.1|RATCRYG Rat gamma-crystallin gene cluster, encoding ... 40 9.3 
>ref|XM_470454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2474

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
            |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 2099 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 2040

                                                  
Query: 644  tcgggcctgcttatctttctcctcttgaattcttcata 681
            || |||||||||||||||||||||||||||||||||||
Sbjct: 2039 tcaggcctgcttatctttctcctcttgaattcttcata 2002
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>dbj|AK072499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023125E22, full
            insert sequence
          Length = 3913

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
            |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 3557 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 3498

                                                  
Query: 644  tcgggcctgcttatctttctcctcttgaattcttcata 681
            || |||||||||||||||||||||||||||||||||||
Sbjct: 3497 tcaggcctgcttatctttctcctcttgaattcttcata 3460
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>dbj|AK060748.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F11, full
            insert sequence
          Length = 2479

 Score =  107 bits (54), Expect = 5e-20
 Identities = 87/98 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
            |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 2123 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 2064

                                                  
Query: 644  tcgggcctgcttatctttctcctcttgaattcttcata 681
            || |||||||||||||||||||||||||||||||||||
Sbjct: 2063 tcaggcctgcttatctttctcctcttgaattcttcata 2026
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>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                         
Query: 584   ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
             |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 96494 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 96553

                                      
Query: 644   tcgggcctgcttatctttctcctct 668
             || ||||||||||||||||||||||
Sbjct: 96554 tcaggcctgcttatctttctcctct 96578
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                            
Query: 584      ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
                |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 35698716 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 35698775

                                         
Query: 644      tcgggcctgcttatctttctcctct 668
                || ||||||||||||||||||||||
Sbjct: 35698776 tcaggcctgcttatctttctcctct 35698800
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                            
Query: 584      ctcactactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctcacaaaa 643
                |||||||||||||||||||  ||||||||||| ||||||||||| ||| |  |||| |  
Sbjct: 35788789 ctcactactgtagaaaccaaaagcttgtcaccaacaatctgtctcagctgcttcactagg 35788848

                                         
Query: 644      tcgggcctgcttatctttctcctct 668
                || ||||||||||||||||||||||
Sbjct: 35788849 tcaggcctgcttatctttctcctct 35788873
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>dbj|AB089269.1| Triticum aestivum D31 mRNA for fructan exohydrolase, complete cds
          Length = 2319

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 589  tactgtagaaaccagcagcttgtcaccgacaatctgtcttagccgtctca 638
            |||||||||||||||||||||||| || || |||| |||| || ||||||
Sbjct: 2247 tactgtagaaaccagcagcttgtcgccaacgatctttcttggctgtctca 2296
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>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete
             sequence
          Length = 191358

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 655   tatctttctcctcttgaattc 675
             |||||||||||||||||||||
Sbjct: 23229 tatctttctcctcttgaattc 23249
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>gb|AC100708.10| Mus musculus chromosome 10, clone RP23-169I18, complete sequence
          Length = 196776

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 338  gaaccaaacaaagctacacca 358
            |||||||||||||||||||||
Sbjct: 8458 gaaccaaacaaagctacacca 8438
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>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186773

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   gtccttgtgctctccgtctcc 453
             |||||||||||||||||||||
Sbjct: 61158 gtccttgtgctctccgtctcc 61178
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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 6       ttttgtcttcctataacttca 26
               |||||||||||||||||||||
Sbjct: 1539096 ttttgtcttcctataacttca 1539116
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>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence
          Length = 191144

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 433    gtccttgtgctctccgtctcc 453
              |||||||||||||||||||||
Sbjct: 142645 gtccttgtgctctccgtctcc 142665
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>gb|AC132265.4| Mus musculus BAC clone RP24-373J20 from chromosome 10, complete
             sequence
          Length = 178780

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   gaaccaaacaaagctacacca 358
             |||||||||||||||||||||
Sbjct: 53370 gaaccaaacaaagctacacca 53390
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>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete
             sequence
          Length = 186861

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 433   gtccttgtgctctccgtctcc 453
             |||||||||||||||||||||
Sbjct: 61370 gtccttgtgctctccgtctcc 61390
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>gb|AY109834.1| Zea mays CL7866_1 mRNA sequence
          Length = 1353

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 663 tcctcttgaattcttcatagt 683
           |||||||||||||||||||||
Sbjct: 444 tcctcttgaattcttcatagt 464
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>gb|AC121870.2| Mus musculus chromosome 9 clone RP24-121D5, complete sequence
          Length = 191747

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 499   tgggaggtgctgctctcccg 518
             ||||||||||||||||||||
Sbjct: 92413 tgggaggtgctgctctcccg 92394
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>gb|AC150858.4| Bos taurus  BAC CH240-431L22 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 166138

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   cagcaaaatagagaaaatgt 179
             ||||||||||||||||||||
Sbjct: 37177 cagcaaaatagagaaaatgt 37196
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>ref|XM_418865.1| PREDICTED: Gallus gallus similar to DERP13 (dermal papilla derived
           protein 13) (LOC420768), mRNA
          Length = 2102

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 662 ctcctcttgaattcttcata 681
           ||||||||||||||||||||
Sbjct: 957 ctcctcttgaattcttcata 938
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>gb|AC144385.2| Pan troglodytes BAC clone CH251-23H14 from X, complete sequence
          Length = 126566

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 13366 tcaaaattaaaagaacaaat 13347
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>gb|AY702011.1| Leishmania donovani strain MHOM/IN/1983/AG83 antigen 2 mRNA,
           partial cds
          Length = 681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 gcaaaatagagaaaatgtaa 181
           ||||||||||||||||||||
Sbjct: 645 gcaaaatagagaaaatgtaa 626
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>gb|AC147070.5| Homo sapiens chromosome 4 clone RP13-1008F15, complete sequence
          Length = 153296

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcaaaattaaaagaacaaat 225
              ||||||||||||||||||||
Sbjct: 107190 tcaaaattaaaagaacaaat 107171
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>gb|AC147055.2| Homo sapiens BAC clone RP11-1267H10 from 4, complete sequence
          Length = 184963

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 60051 tcaaaattaaaagaacaaat 60070
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>gb|AC123037.4| Mus musculus BAC clone RP24-527F14 from chromosome 6, complete sequence
          Length = 137122

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aaattaaaagaacaaatcta 228
              ||||||||||||||||||||
Sbjct: 127623 aaattaaaagaacaaatcta 127604
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 591    ctgtagaaaccagcagcttg 610
              ||||||||||||||||||||
Sbjct: 133779 ctgtagaaaccagcagcttg 133760
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>emb|CR854849.7| Human DNA sequence from clone RP13-79M23 on chromosome 1, complete
             sequence
          Length = 153012

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 65735 tcaaaattaaaagaacaaat 65716
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>emb|AL611962.6| Human DNA sequence from clone RP11-45J16 on chromosome 1 Contains a
             pseudogene similar to flavin-containing monooxygenase
             proteins and the gene for a novel protein similar to
             flavin-containing monoxygenase proteins, complete sequence
          Length = 83051

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 40541 tcaaaattaaaagaacaaat 40522
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>emb|AL603890.14| Human DNA sequence from clone RP11-584P2 on chromosome 1 Contains the
             3' end of a novel gene  similar to preferentially
             expressed antigen in melanoma (PRAME), two novel proteins
             similar to preferentially expressed antigen in melanoma
             (PRAME), a novel gene and a CpG island, complete sequence
          Length = 88806

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 64547 tcaaaattaaaagaacaaat 64566
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>emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chromosome 1 Contains a
             mitochondrial intermediate peptidase (MIPEP) pseudogene
             and a CpG island, complete sequence
          Length = 198794

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 93324 tcaaaattaaaagaacaaat 93305
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>emb|AL445468.8| Human DNA sequence from clone RP11-74P14 on chromosome 1 Contains part
             of the SMYD3 gene for SET and MYND domain containing 3 and
             two CpG islands, complete sequence
          Length = 179503

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 655   tatctttctcctcttgaatt 674
             ||||||||||||||||||||
Sbjct: 57227 tatctttctcctcttgaatt 57246
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>emb|AL365443.16| Human DNA sequence from clone RP11-219C24 on chromosome 1 Contains six
             novel genes similar to preferentially expressed antigen in
             melanoma (PRAME), two novel genes, two preferentially
             expressed antigen in melanoma (PRAME) pseudogenes and a
             CpG island, complete sequence
          Length = 184591

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 90617 tcaaaattaaaagaacaaat 90598
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>emb|AL157712.14| Human DNA sequence from clone RP11-339B9 on chromosome 10 Contains two
             CpG islands, complete sequence
          Length = 131112

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 14843 tcaaaattaaaagaacaaat 14862
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>emb|AL035086.12|HS44A20 Human DNA sequence from clone RP1-44A20 on chromosome 6q23.1-24.3
             Contains part of the gene for a novel protein similar to
             C1-tetrahydrofolate synthases (contains DKFZP586G1517
             protein and FLJ21145, contains a tetrahydrofolate
             dehydrogenase/cyclohydrolase domain), part of a novel gene
             (contains FLJ31738 and KIAA1209) and a novel pseudogene
             similar to phosducin-like proteins. Contains a CpG island,
             complete sequence
          Length = 165090

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 63232 tcaaaattaaaagaacaaat 63213
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>emb|BX571876.1|BACPHGLE1 Leptospira biflexa temperate bacteriophage LE1
          Length = 73623

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  aaaatagagaaaatgtaaag 183
            ||||||||||||||||||||
Sbjct: 1273 aaaatagagaaaatgtaaag 1292
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>emb|AL935252.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 1/11
          Length = 343050

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     catcaatcatagtacaaccg 71
              ||||||||||||||||||||
Sbjct: 261287 catcaatcatagtacaaccg 261306
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>emb|BX927375.6| Zebrafish DNA sequence from clone CH211-258B24 in linkage group 1,
             complete sequence
          Length = 53738

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   tcagctcaaaattaaaagaa 220
             ||||||||||||||||||||
Sbjct: 14828 tcagctcaaaattaaaagaa 14847
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>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence
          Length = 142712

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 38118 tcaaaattaaaagaacaaat 38137
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>gb|DP000052.1| Sus scrofa target 126 genomic scaffold
          Length = 432382

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    aaaatagagaaaatgtaaag 183
              ||||||||||||||||||||
Sbjct: 179736 aaaatagagaaaatgtaaag 179755
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>gb|AC091046.2|AC091046 Homo sapiens chromosome 15 clone RP11-123C21 map 15q21.3, complete
              sequence
          Length = 186846

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      gattttgtcttcctataacttcac 27
              ||||||||| ||||||||||||||
Sbjct: 140578 gattttgtcctcctataacttcac 140555
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 537     gtagcagttcagcacctgcc 556
               ||||||||||||||||||||
Sbjct: 9660543 gtagcagttcagcacctgcc 9660524
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 537      gtagcagttcagcacctgcc 556
                ||||||||||||||||||||
Sbjct: 21886697 gtagcagttcagcacctgcc 21886678
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>gb|AC126281.3| Homo sapiens cosmid clone XXcos-2173C8 from 4, complete sequence
          Length = 39686

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 39306 tcaaaattaaaagaacaaat 39287
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>gb|AC145688.4| Pan troglodytes BAC clone CH251-346A10 from chromosome x, complete
              sequence
          Length = 174819

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcaaaattaaaagaacaaat 225
              ||||||||||||||||||||
Sbjct: 135148 tcaaaattaaaagaacaaat 135129
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>gb|AF328509.1|AF328509 Homo sapiens clone 4qtel_2173c8t3 sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 tcaaaattaaaagaacaaat 225
           ||||||||||||||||||||
Sbjct: 354 tcaaaattaaaagaacaaat 373
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>gb|AF277315.6| Homo sapiens chromosome X clone RP5-865E18, RP5-1087L19 map q28,
             complete sequence
          Length = 147234

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 90487 tcaaaattaaaagaacaaat 90468
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>gb|AC016696.8| Homo sapiens BAC clone RP11-130P22 from 2, complete sequence
          Length = 109431

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   ctcaaaattaaaagaacaaa 224
             ||||||||||||||||||||
Sbjct: 40647 ctcaaaattaaaagaacaaa 40666
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>gb|AF261714.1|AF261714 Leptospira biflexa temperate bacteriophage LE1 Orf1, Orf2, Orf3,
            Orf4, and Orf5 genes, complete cds
          Length = 5259

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 164  aaaatagagaaaatgtaaag 183
            ||||||||||||||||||||
Sbjct: 3598 aaaatagagaaaatgtaaag 3617
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>gb|AC134921.2| Homo sapiens BAC clone RP11-597F18 from 4, complete sequence
          Length = 96776

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 68053 tcaaaattaaaagaacaaat 68072
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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0706E03
          Length = 188028

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    gtagcagttcagcacctgcc 556
              ||||||||||||||||||||
Sbjct: 100640 gtagcagttcagcacctgcc 100621
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>gb|AF090948.1|AF090948 Homo sapiens clone HQ0709
          Length = 1269

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 4    gattttgtcttcctataacttcac 27
            ||||||||| ||||||||||||||
Sbjct: 998  gattttgtcctcctataacttcac 1021
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>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0041B22
          Length = 142446

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    gtagcagttcagcacctgcc 556
              ||||||||||||||||||||
Sbjct: 100373 gtagcagttcagcacctgcc 100354
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>dbj|AP006332.2| Homo sapiens genomic DNA, chromosome Un clone:CMF9-56D23, telomere
             region, complete sequence
          Length = 32289

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 15459 tcaaaattaaaagaacaaat 15478
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>dbj|AP006225.1| Homo sapiens genomic DNA, chromosome Un, clone:CMF-39K16, telomere
             region, complete sequence
          Length = 28943

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   tcaaaattaaaagaacaaat 225
             ||||||||||||||||||||
Sbjct: 19457 tcaaaattaaaagaacaaat 19438
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>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence
          Length = 228892

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   agagtgtttccagttactaa 308
             ||||||||||||||||||||
Sbjct: 96745 agagtgtttccagttactaa 96764
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>gb|AC125159.4| Mus musculus BAC clone RP24-394C23 from 6, complete sequence
          Length = 190966

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   aaattaaaagaacaaatcta 228
             ||||||||||||||||||||
Sbjct: 36280 aaattaaaagaacaaatcta 36261
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>emb|AL672042.8| Mouse DNA sequence from clone RP23-91P22 on chromosome X, complete
             sequence
          Length = 198740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   accaggtacatcacggtaca 247
             ||||||||||||||||||||
Sbjct: 43277 accaggtacatcacggtaca 43258
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>gb|M19359.1|RATCRYG Rat gamma-crystallin gene cluster, encoding gamma-A (gamma 1-1),
            gamma-B (gamma 1-2), gamma-C (gamma 2-1), gamma-D (gamma
            2-2), and gamma-E (gamma 3-1) crystallins, complete cds
          Length = 54670

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  caaaatagagaaaatgtaaa 182
            ||||||||||||||||||||
Sbjct: 1948 caaaatagagaaaatgtaaa 1967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,704,483
Number of Sequences: 3902068
Number of extensions: 6704483
Number of successful extensions: 122667
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122465
Number of HSP's gapped (non-prelim): 196
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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