Clone Name | rbasdp02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK072950.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146L07, full insert sequence Length = 2099 Score = 428 bits (216), Expect = e-116 Identities = 351/396 (88%) Strand = Plus / Minus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1744 gtgtagcttcaagcagcagccttcttgcagtggttttccagccactccatggtgacactc 1685 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctgagatccaattcct 381 ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || ||| Sbjct: 1684 ttcggtctttcgagcggcagaccaagagcacggtcccaaatgagctgggatcctatgcct 1625 Query: 382 atgctccttgagacgccgaacaagacagtgtagtatcgtgcttcagttaatccgaagtgg 441 |||||||| || || ||||| | ||| ||||| || || ||||||| |||||| |||||| Sbjct: 1624 atgctcctcgaaactccgaaaaggacggtgtaataccgagcttcagataatccaaagtgg 1565 Query: 442 ttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgcccaac 501 || |||| ||||||||||||||||| |||||||||||||||||||| |||||||| | | Sbjct: 1564 ttcagcagaactccactgtgagcatcaacattaggccatgggtttttgaccttgccaagc 1505 Query: 502 tcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcc 561 || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1504 tcagtgaggattggaggcacaacttcatacaacttggagaccagttggaaaagtggatcc 1445 Query: 562 tccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtattgcgt 621 || || || |||||||| ||||||||||| || || | ||||||||||| || || ||| Sbjct: 1444 tcaggcaagtacttcaaagcaaactccctctgacatgtatatcgtggatcggtcttacgt 1385 Query: 622 agaactccatgaccatagccaggaacgacctttcca 657 |||||||||||||| |||||||||| ||||||||| Sbjct: 1384 agaactccatgaccgaagccaggaacaacctttcca 1349
>ref|XM_464443.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1419 Score = 404 bits (204), Expect = e-109 Identities = 342/388 (88%) Strand = Plus / Minus Query: 270 tcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactcttcggtct 329 |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 1419 tcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactcttcggtct 1360 Query: 330 ttcaagcggcagaccaagggcacggtcccagatgagctgagatccaattcctatgctcct 389 ||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 1359 ttcgagcggcaggccaagagcacggtcccaaatgagctgagatcctattccaatgctcct 1300 Query: 390 tgagacgccgaacaagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaa 449 ||| || ||||| | |||||||| || || ||||||| |||||| |||||||| || | Sbjct: 1299 tgaaactccgaaaagaacagtgtaataccgagcttcagataatccaaagtggttcagtag 1240 Query: 450 cactccactgtgagcatcgacattaggccatgggttttttaccttgcccaactcggtgag 509 ||||| ||||||||||| |||||||||||||||||||| |||||||| | ||| ||||| Sbjct: 1239 aactccgctgtgagcatcaacattaggccatgggtttttgaccttgccaagctcagtgag 1180 Query: 510 gatcggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcctccggtaa 569 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct: 1179 gataggaggcacaacttcatacaacttggagaccagttggaaaagtggatcctcaggcaa 1120 Query: 570 atacttcaatgcaaactccctttggcacgagtatcgtggatctgtattgcgtagaactcc 629 |||||||| ||||||||||| || || | || |||||||| || || ||||||||||| Sbjct: 1119 gtacttcaaagcaaactccctctgacatgtataccgtggatcggtcttacgtagaactcc 1060 Query: 630 atgaccatagccaggaacgacctttcca 657 ||||||| |||||||||| ||||||||| Sbjct: 1059 atgaccaaagccaggaacaacctttcca 1032
>gb|AY753182.1| Oryza sativa (japonica cultivar-group) citrate synthase mRNA, complete cds Length = 1477 Score = 404 bits (204), Expect = e-109 Identities = 342/388 (88%) Strand = Plus / Minus Query: 270 tcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactcttcggtct 329 |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 1470 tcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactcttcggtct 1411 Query: 330 ttcaagcggcagaccaagggcacggtcccagatgagctgagatccaattcctatgctcct 389 ||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 1410 ttcgagcggcaggccaagagcacggtcccaaatgagctgagatcctattccaatgctcct 1351 Query: 390 tgagacgccgaacaagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaa 449 ||| || ||||| | |||||||| || || ||||||| |||||| |||||||| || | Sbjct: 1350 tgaaactccgaaaagaacagtgtaataccgagcttcagataatccaaagtggttcagtag 1291 Query: 450 cactccactgtgagcatcgacattaggccatgggttttttaccttgcccaactcggtgag 509 ||||| ||||||||||| |||||||||||||||||||| |||||||| | ||| ||||| Sbjct: 1290 aactccgctgtgagcatcaacattaggccatgggtttttgaccttgccaagctcagtgag 1231 Query: 510 gatcggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcctccggtaa 569 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct: 1230 gataggaggcacaacttcatacaacttggagaccagttggaaaagtggatcctcaggcaa 1171 Query: 570 atacttcaatgcaaactccctttggcacgagtatcgtggatctgtattgcgtagaactcc 629 |||||||| ||||||||||| || || | || |||||||| || || ||||||||||| Sbjct: 1170 gtacttcaaagcaaactccctctgacatgtataccgtggatcggtcttacgtagaactcc 1111 Query: 630 atgaccatagccaggaacgacctttcca 657 ||||||| |||||||||| ||||||||| Sbjct: 1110 atgaccaaagccaggaacaacctttcca 1083
>gb|AF302906.1|AF302906 Oryza sativa citrate synthase mRNA, complete cds Length = 1523 Score = 404 bits (204), Expect = e-109 Identities = 342/388 (88%) Strand = Plus / Minus Query: 270 tcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactcttcggtct 329 |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 1523 tcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactcttcggtct 1464 Query: 330 ttcaagcggcagaccaagggcacggtcccagatgagctgagatccaattcctatgctcct 389 ||| |||||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct: 1463 ttcgagcggcaggccaagagcacggtcccaaatgagctgagatcctattccaatgctcct 1404 Query: 390 tgagacgccgaacaagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaa 449 ||| || ||||| | |||||||| || || ||||||| |||||| |||||||| || | Sbjct: 1403 tgaaactccgaaaagaacagtgtaataccgagcttcagataatccaaagtggttcagtag 1344 Query: 450 cactccactgtgagcatcgacattaggccatgggttttttaccttgcccaactcggtgag 509 ||||| ||||||||||| |||||||||||||||||||| |||||||| | ||| ||||| Sbjct: 1343 aactccgctgtgagcatcaacattaggccatgggtttttgaccttgccaagctcagtgag 1284 Query: 510 gatcggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcctccggtaa 569 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct: 1283 gataggaggcacaacttcatacaacttggagaccagttggaaaagtggatcctcaggcaa 1224 Query: 570 atacttcaatgcaaactccctttggcacgagtatcgtggatctgtattgcgtagaactcc 629 |||||||| ||||||||||| || || | || |||||||| || || ||||||||||| Sbjct: 1223 gtacttcaaagcaaactccctctgacatgtataccgtggatcggtcttacgtagaactcc 1164 Query: 630 atgaccatagccaggaacgacctttcca 657 ||||||| |||||||||| ||||||||| Sbjct: 1163 atgaccaaagccaggaacaacctttcca 1136
>gb|AY104057.1| Zea mays PCO125766 mRNA sequence Length = 1481 Score = 323 bits (163), Expect = 4e-85 Identities = 322/375 (85%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacactcttcggtctttcaagcggcaga 342 |||||||||| ||| || |||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 1122 ttcttgcagtagttctccagccactccatggtaacactcttcggcctctcaagtggcagg 1063 Query: 343 ccaagggcacggtcccagatgagctgagatccaattcctatgctccttgagacgccgaac 402 |||||||||||||||||||||||||| ||||| || || ||||| || || || |||||| Sbjct: 1062 ccaagggcacggtcccagatgagctgggatcctatccccatgcttctcgaaacaccgaac 1003 Query: 403 aagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaacactccactgtga 462 ||||||||||| || |||||||||| || ||| |||||||| ||||| |||||||||||| Sbjct: 1002 aagacagtgtaataccgtgcttcagatagtccaaagtggttcagcaaaactccactgtga 943 Query: 463 gcatcgacattaggccatgggttttttaccttgcccaactcggtgaggatcggaggcaca 522 ||||| ||||| ||||| ||||| || ||||| || | ||| |||||||||||||| || Sbjct: 942 gcatcaacattcggccacgggttcttgacctttcctagctcagtgaggatcggaggtacg 883 Query: 523 acttcatacaacttggagaccagttggaaaagtgggtcctccggtaaatacttcaatgca 582 |||||||| |||||||| ||||||||||||||||| ||||| || |||| ||||| ||| Sbjct: 882 acttcatataacttggacaccagttggaaaagtggatcctcgggcaaatgcttcagggca 823 Query: 583 aactccctttggcacgagtatcgtggatctgtattgcgtagaactccatgaccatagcca 642 ||||||||||| || || || ||||| ||||| ||||| ||||||||||| ||| | ||| Sbjct: 822 aactccctttgacatgaataccgtgggtctgtcttgcgcagaactccatggccaaatcca 763 Query: 643 ggaacgacctttcca 657 ||||| ||||||||| Sbjct: 762 ggaacaacctttcca 748
>gb|BT016982.1| Zea mays clone EK07D2304B02.c mRNA sequence Length = 976 Score = 317 bits (160), Expect = 3e-83 Identities = 323/376 (85%), Gaps = 1/376 (0%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactcc-atggtgacactcttcggtctttcaagcggcag 341 |||||||||| ||| || ||||||||| ||||| ||||||||||| || ||||| ||||| Sbjct: 631 ttcttgcagtagttctccagccactcccatggtaacactcttcggcctctcaagtggcag 572 Query: 342 accaagggcacggtcccagatgagctgagatccaattcctatgctccttgagacgccgaa 401 |||||||||||||||||||||||||||||||| || || ||||| ||||| | ||||| Sbjct: 571 gccaagggcacggtcccagatgagctgagatcctatccccatgcttcttgaacccccgaa 512 Query: 402 caagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaacactccactgtg 461 |||||||||||| | |||||||||| || ||| |||||||| ||||| ||||||||||| Sbjct: 511 caagacagtgtaatcccgtgcttcagatagtccaaagtggttcagcaaaactccactgtg 452 Query: 462 agcatcgacattaggccatgggttttttaccttgcccaactcggtgaggatcggaggcac 521 |||||| ||||| ||||||||||| || |||||||||| ||| |||||||| ||||| || Sbjct: 451 agcatcaacatttggccatgggttcttgaccttgcccagctcagtgaggataggaggtac 392 Query: 522 aacttcatacaacttggagaccagttggaaaagtgggtcctccggtaaatacttcaatgc 581 |||||||||||||||||| |||| |||||||||||| |||| || |||| ||||| || Sbjct: 391 aacttcatacaacttggacaccaattggaaaagtggatccttgggcaaatgcttcagggc 332 Query: 582 aaactccctttggcacgagtatcgtggatctgtattgcgtagaactccatgaccatagcc 641 |||||||||||| || || || ||||| || || || || ||||||||||||||| | || Sbjct: 331 aaactccctttgacatgaataccgtgggtcggtcttacgcagaactccatgaccaaaccc 272 Query: 642 aggaacgacctttcca 657 |||||| ||||||||| Sbjct: 271 aggaacaacctttcca 256
>gb|BT018332.1| Zea mays clone EL01T0402A06.c mRNA sequence Length = 1288 Score = 315 bits (159), Expect = 1e-82 Identities = 321/375 (85%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacactcttcggtctttcaagcggcaga 342 |||||||||| ||| || |||||||||||||| ||||||||||| || ||||| ||||| Sbjct: 1010 ttcttgcagtagttctccagccactccatggtaacactcttcggcctctcaagtggcagg 951 Query: 343 ccaagggcacggtcccagatgagctgagatccaattcctatgctccttgagacgccgaac 402 |||||||||||||||||||||||||| ||||| || || ||||| || || || |||||| Sbjct: 950 ccaagggcacggtcccagatgagctgggatcctatccccatgcttctcgaaacaccgaac 891 Query: 403 aagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaacactccactgtga 462 ||||||||||| || ||||||||| || ||| |||||||| ||||| |||||||||||| Sbjct: 890 aagacagtgtaataccgtgcttcaaatagtccaaagtggttcagcaaaactccactgtga 831 Query: 463 gcatcgacattaggccatgggttttttaccttgcccaactcggtgaggatcggaggcaca 522 ||||| ||||| ||||| ||||| || ||||| || | ||| |||||||||||||| || Sbjct: 830 gcatcaacattcggccacgggttcttgacctttcctagctcagtgaggatcggaggtacg 771 Query: 523 acttcatacaacttggagaccagttggaaaagtgggtcctccggtaaatacttcaatgca 582 |||||||| |||||||| ||||||||||||||||| ||||| || |||| ||||| ||| Sbjct: 770 acttcatataacttggacaccagttggaaaagtggatcctcgggcaaatgcttcagggca 711 Query: 583 aactccctttggcacgagtatcgtggatctgtattgcgtagaactccatgaccatagcca 642 ||||||||||| || || || ||||| ||||| ||||| ||||||||||| ||| | ||| Sbjct: 710 aactccctttgacatgaataccgtgggtctgtcttgcgcagaactccatggccaaatcca 651 Query: 643 ggaacgacctttcca 657 ||||| ||||||||| Sbjct: 650 ggaacaacctttcca 636
>emb|X84227.1|PHCITSYNH Populus hybrid mRNA for citrate synthase Length = 1378 Score = 202 bits (102), Expect = 1e-48 Identities = 306/374 (81%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacactcttcggtctttcaagcggcaga 342 ||||||||||| || || ||| | ||||| || |||||||| || || || ||||||| Sbjct: 1019 ttcttgcagtgattctcaagcaattccattgtaacactctttggcctctccagcggcaat 960 Query: 343 ccaagggcacggtcccagatgagctgagatccaattcctatgctccttgagacgccgaac 402 ||||| || || ||||| || |||||||| | ||| || || |||||||| || ||||| Sbjct: 959 ccaagagctcgatcccatatcagctgagagcaaatgccaatactccttgatacaccgaaa 900 Query: 403 aagacagtgtagtatcgtgcttcagttaatccgaagtggttaagcaacactccactgtga 462 | ||||| ||||| | ||||||||||| ||| ||| ||| |||||||| ||||||||| Sbjct: 899 agtacagtatagtacctagcttcagttaaaccgtagtagttcagcaacaccccactgtga 840 Query: 463 gcatcgacattaggccatgggttttttaccttgcccaactcggtgaggatcggaggcaca 522 ||||| |||||||||||||||||||| |||||||||| || ||| || | ||||| ||| Sbjct: 839 gcatcaacattaggccatgggtttttaaccttgcccagctgggtaagaactggaggtaca 780 Query: 523 acttcatacaacttggagaccagttggaaaagtgggtcctccggtaaatacttcaatgca 582 |||||||| | ||| |||||||| ||||| | ||| || || ||||||| |||||||||| Sbjct: 779 acttcatatagcttagagaccagctggaacaatggatcatcaggtaaatgcttcaatgca 720 Query: 583 aactccctttggcacgagtatcgtggatctgtattgcgtagaactccatgaccatagcca 642 ||||||||||| || | |||| ||| | || ||||||||||||||||||||| | ||| Sbjct: 719 aactccctttgacatgtatatcttggtacagttttgcgtagaactccatgaccaaatcca 660 Query: 643 ggaacgacctttcc 656 ||||| |||||||| Sbjct: 659 ggaacaacctttcc 646
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 165 bits (83), Expect = 2e-37 Identities = 101/107 (94%) Strand = Plus / Minus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 93517 gtgtagcttcaagcagcagccttcttgcagtggttttccagccactccatggtgacactc 93458 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctg 368 ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 93457 ttcggtctttcgagcggcagaccaagagcacggtcccaaatgagctg 93411 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || |||||||| ||||||||||| || || | Sbjct: 92863 accagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgta 92804 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaacgacct 652 ||||||||||| || || ||||||||||||||||| |||||||||| |||| Sbjct: 92803 tatcgtggatcggtcttacgtagaactccatgaccgaagccaggaacaacct 92752 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||| Sbjct: 93154 gcttcagataatccaaagtggttcagcagaactccactgtgagcatcaacattaggccat 93095 Query: 481 gggttttttacct 493 |||||||| |||| Sbjct: 93094 gggtttttgacct 93082 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 488 ttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 93002 ttaccttgccaagctcagtgaggattggaggcacaacttcatacaacttggagacc 92947
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 165 bits (83), Expect = 2e-37 Identities = 101/107 (94%) Strand = Plus / Minus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 18990319 gtgtagcttcaagcagcagccttcttgcagtggttttccagccactccatggtgacactc 18990260 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctg 368 ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 18990259 ttcggtctttcgagcggcagaccaagagcacggtcccaaatgagctg 18990213 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || |||||||| ||||||||||| || || | Sbjct: 18989665 accagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgta 18989606 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaacgacct 652 ||||||||||| || || ||||||||||||||||| |||||||||| |||| Sbjct: 18989605 tatcgtggatcggtcttacgtagaactccatgaccgaagccaggaacaacct 18989554 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||| Sbjct: 18989956 gcttcagataatccaaagtggttcagcagaactccactgtgagcatcaacattaggccat 18989897 Query: 481 gggttttttacct 493 |||||||| |||| Sbjct: 18989896 gggtttttgacct 18989884 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 488 ttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 18989804 ttaccttgccaagctcagtgaggattggaggcacaacttcatacaacttggagacc 18989749 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 511 atcggaggcacaacttcatacaacttg 537 ||||||||||||||||||||||||||| Sbjct: 23521509 atcggaggcacaacttcatacaacttg 23521535 Score = 46.1 bits (23), Expect = 0.15 Identities = 86/107 (80%) Strand = Plus / Plus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || || |||| || ||||||||| || || | Sbjct: 23521618 accagttggaaaagtggatcctcaggcaagtaattcagtgtaaactccctctgacaagta 23521677 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaac 647 ||||||||| | | || | | ||||||||||||| |||||||||| Sbjct: 23521678 tatcgtggaacaatcttacacataactccatgaccaaagccaggaac 23521724 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 actccactgtgagcatcgacatta 474 ||||||||||||||||| |||||| Sbjct: 23521355 actccactgtgagcatcaacatta 23521378
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 165 bits (83), Expect = 2e-37 Identities = 101/107 (94%) Strand = Plus / Minus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 19148968 gtgtagcttcaagcagcagccttcttgcagtggttttccagccactccatggtgacactc 19148909 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctg 368 ||||||||||| |||||||||||||| ||||||||||| |||||||| Sbjct: 19148908 ttcggtctttcgagcggcagaccaagagcacggtcccaaatgagctg 19148862 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Minus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || |||||||| ||||||||||| || || | Sbjct: 19148314 accagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgta 19148255 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaacgacct 652 ||||||||||| || || ||||||||||||||||| |||||||||| |||| Sbjct: 19148254 tatcgtggatcggtcttacgtagaactccatgaccgaagccaggaacaacct 19148203 Score = 89.7 bits (45), Expect = 1e-14 Identities = 66/73 (90%) Strand = Plus / Minus Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||||| |||||| |||||||| |||| ||||||||||||||||| |||||||||||| Sbjct: 19148605 gcttcagataatccaaagtggttcagcagaactccactgtgagcatcaacattaggccat 19148546 Query: 481 gggttttttacct 493 |||||||| |||| Sbjct: 19148545 gggtttttgacct 19148533 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 488 ttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 19148453 ttaccttgccaagctcagtgaggattggaggcacaacttcatacaacttggagacc 19148398 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 511 atcggaggcacaacttcatacaacttg 537 ||||||||||||||||||||||||||| Sbjct: 23831445 atcggaggcacaacttcatacaacttg 23831471 Score = 46.1 bits (23), Expect = 0.15 Identities = 86/107 (80%) Strand = Plus / Plus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || || |||| || ||||||||| || || | Sbjct: 23831554 accagttggaaaagtggatcctcaggcaagtaattcagtgtaaactccctctgacaagta 23831613 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaac 647 ||||||||| | | || | | ||||||||||||| |||||||||| Sbjct: 23831614 tatcgtggaacaatcttacacataactccatgaccaaagccaggaac 23831660 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 actccactgtgagcatcgacatta 474 ||||||||||||||||| |||||| Sbjct: 23831291 actccactgtgagcatcaacatta 23831314
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 6e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 5243056 gtgtagcttcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactc 5243115 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctg 368 ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 5243116 ttcggtctttcgagcggcaggccaagagcacggtcccaaatgagctg 5243162 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || |||||||| ||||||||||| || || | Sbjct: 5243761 accagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgta 5243820 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaacgacct 652 || |||||||| || || |||||||||||||||||| |||||||||| |||| Sbjct: 5243821 taccgtggatcggtcttacgtagaactccatgaccaaagccaggaacaacct 5243872 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 488 ttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 5243629 ttaccttgccaagctcagtgaggataggaggcacaacttcatacaacttggagacc 5243684 Score = 73.8 bits (37), Expect = 6e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||||| |||||| |||||||| || | ||||| ||||||||||| |||||||||||| Sbjct: 5243456 gcttcagataatccaaagtggttcagtagaactccgctgtgagcatcaacattaggccat 5243515 Query: 481 gggttttttacct 493 |||||||| |||| Sbjct: 5243516 gggtttttgacct 5243528 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 tgccaagtttgacagattgactga 111 ||||||||||||||||||| |||| Sbjct: 8308034 tgccaagtttgacagattggctga 8308057 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 366 ctgagatccaattcctatgctccttgagacgccgaa 401 ||||||||| ||||| ||||||||||| || ||||| Sbjct: 5243280 ctgagatcctattccaatgctccttgaaactccgaa 5243315
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 157 bits (79), Expect = 6e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 262 gtgtagcttcaagctgcaaccttcttgcagtggttttcgagccactccatggtgacactc 321 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 136509 gtgtagcttcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactc 136568 Query: 322 ttcggtctttcaagcggcagaccaagggcacggtcccagatgagctg 368 ||||||||||| |||||||| ||||| ||||||||||| |||||||| Sbjct: 136569 ttcggtctttcgagcggcaggccaagagcacggtcccaaatgagctg 136615 Score = 95.6 bits (48), Expect = 2e-16 Identities = 96/112 (85%) Strand = Plus / Plus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || |||||||| ||||||||||| || || | Sbjct: 137214 accagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgta 137273 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaacgacct 652 || |||||||| || || |||||||||||||||||| |||||||||| |||| Sbjct: 137274 taccgtggatcggtcttacgtagaactccatgaccaaagccaggaacaacct 137325 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 488 ttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 |||||||||| | ||| |||||||| |||||||||||||||||||||||||||||| Sbjct: 137082 ttaccttgccaagctcagtgaggataggaggcacaacttcatacaacttggagacc 137137 Score = 73.8 bits (37), Expect = 6e-10 Identities = 64/73 (87%) Strand = Plus / Plus Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||||| |||||| |||||||| || | ||||| ||||||||||| |||||||||||| Sbjct: 136909 gcttcagataatccaaagtggttcagtagaactccgctgtgagcatcaacattaggccat 136968 Query: 481 gggttttttacct 493 |||||||| |||| Sbjct: 136969 gggtttttgacct 136981 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 366 ctgagatccaattcctatgctccttgagacgccgaa 401 ||||||||| ||||| ||||||||||| || ||||| Sbjct: 136733 ctgagatcctattccaatgctccttgaaactccgaa 136768
>emb|X84228.1|BVCITSYNH B.vulgaris mRNA for citrate synthase Length = 1551 Score = 127 bits (64), Expect = 5e-26 Identities = 256/320 (80%) Strand = Plus / Minus Query: 295 ttttcgagccactccatggtgacactcttcggtctttcaagcggcagaccaagggcacgg 354 ||||| ||||| ||||| ||||||||||| || || || ||||||| ||||| || ||| Sbjct: 1292 ttttcaagccattccatagtgacactctttggcctctctagcggcaagccaagagctcgg 1233 Query: 355 tcccagatgagctgagatccaattcctatgctccttgagacgccgaacaagacagtgtag 414 ||||| || ||||| || | ||||| | |||||||| || || ||||| || || ||| Sbjct: 1232 tcccatataagctgtgagcatattccaagactccttgataccccaaacaaaaccgtatag 1173 Query: 415 tatcgtgcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacatta 474 |||| |||||| || || || ||||||| ||||| |||||||| |||||||| |||||| Sbjct: 1172 tatcttgcttctgtcaaaccatagtggttcagcaaaactccactatgagcatcaacatta 1113 Query: 475 ggccatgggttttttaccttgcccaactcggtgaggatcggaggcacaacttcatacaac 534 |||||||| || |||||||| || | ||| || || |||||||| |||||||||||| Sbjct: 1112 ggccatggattctttacctttccaagctctaatagaataggaggcaccacttcatacaac 1053 Query: 535 ttggagaccagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttgg 594 || || |||| ||| |||| |||||| || || || | |||||| ||||| || |||||| Sbjct: 1052 tttgacaccaattgaaaaaatgggtcatcaggcaagtgcttcaacgcaaattctctttgg 993 Query: 595 cacgagtatcgtggatctgt 614 || | ||||| ||||||||| Sbjct: 992 catgtgtatcttggatctgt 973
>gb|AF367444.1| Prunus persica clone Cs1 citrate synthase (cs1) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1873 Score = 117 bits (59), Expect = 5e-23 Identities = 230/287 (80%) Strand = Plus / Minus Query: 328 ctttcaagcggcagaccaagggcacggtcccagatgagctgagatccaattcctatgctc 387 |||||||| |||| |||||| || |||||||| || |||||||| ||||| ||||| ||| Sbjct: 1502 ctttcaagaggcaaaccaagagcccggtcccatatcagctgagaaccaatccctatactc 1443 Query: 388 cttgagacgccgaacaagacagtgtagtatcgtgcttcagttaatccgaagtggttaagc 447 ||||| ||||| || | ||||| | ||| ||| || || || || || ||||| | | Sbjct: 1442 cttgatacgccaaagagaacagtaaaaaatcttgcctcggtcaaaccaaaatggttcaac 1383 Query: 448 aacactccactgtgagcatcgacattaggccatgggttttttaccttgcccaactcggtg 507 | ||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||| | Sbjct: 1382 agaactccactgtgagcatctacattgggccaggggtttttaaccttgcctagttcgata 1323 Query: 508 aggatcggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcctccggt 567 || || |||||||| |||||||| | |||||||||||| || || || || || || || Sbjct: 1322 agaatgggaggcacgacttcataaagcttggagaccagctgaaacagcggatcatcaggc 1263 Query: 568 aaatacttcaatgcaaactccctttggcacgagtatcgtggatctgt 614 || | ||| ||||||||||||| ||| || ||||||||||||||||| Sbjct: 1262 aagtgctttaatgcaaactcccgttgacatgagtatcgtggatctgt 1216
>emb|BX819782.1|CNS0A8I6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS26ZH09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1714 Score = 115 bits (58), Expect = 2e-22 Identities = 268/338 (79%) Strand = Plus / Minus Query: 301 agccactccatggtgacactcttcggtctttcaagcggcagaccaagggcacggtcccag 360 ||||| |||||||| |||||||| || || ||||| | || ||||| || |||||||| Sbjct: 1477 agccagtccatggtaacactctttggcctctcaagtgcaagtccaagagctcggtcccat 1418 Query: 361 atgagctgagatccaattcctatgctccttgagacgccgaacaagacagtgtagtatcgt 420 ||||||||||| | || || | |||||||| || || || | || |||||||| | | Sbjct: 1417 atgagctgagagcagatgccaagactccttgaaacaccaaagagcacggtgtagtacctt 1358 Query: 421 gcttcagttaatccgaagtggttaagcaacactccactgtgagcatcgacattaggccat 480 ||||| |||| || ||||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 1357 gcttcggttagaccatagtggttcagcaagaccccactgtgagcatcaacatttggccac 1298 Query: 481 gggttttttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggag 540 ||||| || ||||| || | ||| ||||| | ||||||||||||||||| | ||| || Sbjct: 1297 gggttcttcacctttccaagctcagtgagaacaggaggcacaacttcataaagctttgac 1238 Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||| |||||||| ||||| || |||| || |||||| ||||| || |||||||| Sbjct: 1237 accagctggaaaagagggtcgtcaggtagatgcttcaaggcaaattctctttggcataca 1178 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccata 638 |||| |||||| |||||||| ||||| || |||||||| Sbjct: 1177 tatcttggatcagtattgcgcagaacaccgtgaccata 1140
>ref|NM_129998.2| Arabidopsis thaliana ATCS; citrate (SI)-synthase AT2G44350 (ATCS) transcript variant AT2G44350.1 mRNA, complete cds Length = 2112 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1384 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1325 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1324 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1265 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1264 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1205 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1204 tgcgcagaacaccgtgaccata 1183
>ref|NM_180084.1| Arabidopsis thaliana ATCS; citrate (SI)-synthase AT2G44350 (ATCS) transcript variant AT2G44350.2 mRNA, complete cds Length = 2115 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1387 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1328 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1327 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1268 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1267 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1208 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1207 tgcgcagaacaccgtgaccata 1186
>gb|BT006613.1| Arabidopsis thaliana At2g44350 mRNA, complete cds Length = 1422 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1252 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1193 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1192 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1133 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1132 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1073 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1072 tgcgcagaacaccgtgaccata 1051
>gb|AF387018.1|AF387018 Arabidopsis thaliana citrate synthase (At2g44350; F4I1.16) mRNA, complete cds Length = 1757 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1386 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1327 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1326 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1267 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1266 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1207 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1206 tgcgcagaacaccgtgaccata 1185
>emb|BX819934.1|CNS0A8H8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS50ZE12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1675 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1342 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1283 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1282 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1223 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1222 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1163 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1162 tgcgcagaacaccgtgaccata 1141
>emb|BX819832.1|CNS0A7W8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS34ZA05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1675 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1340 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1281 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1280 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1221 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1220 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1161 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1160 tgcgcagaacaccgtgaccata 1139
>gb|AY085647.1| Arabidopsis thaliana clone 16528 mRNA, complete sequence Length = 1764 Score = 107 bits (54), Expect = 5e-20 Identities = 165/202 (81%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgc 496 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| || ||||| | Sbjct: 1363 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggttcttcacctttc 1304 Query: 497 ccaactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtg 556 | | ||| ||||| | ||||||||||||||||| | ||| || ||||| |||||||| | Sbjct: 1303 caagctcagtgagaacaggaggcacaacttcataaagctttgacaccagctggaaaagag 1244 Query: 557 ggtcctccggtaaatacttcaatgcaaactccctttggcacgagtatcgtggatctgtat 616 |||| || |||| || |||||| ||||| || |||||||| |||| |||||| |||| Sbjct: 1243 ggtcgtcaggtagatgcttcaaggcaaattctctttggcatacatatcttggatcagtat 1184 Query: 617 tgcgtagaactccatgaccata 638 |||| ||||| || |||||||| Sbjct: 1183 tgcgcagaacaccgtgaccata 1162
>emb|X75082.1|STCITS S.tuberosum mRNA for mitochondrial citrate-synthase Length = 1891 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacactcttcggtctttcaagcggcaga 342 |||||||| ||||| || ||||||||||| ||||||||||| || || || ||||||| Sbjct: 1481 ttcttgcactggttctcaagccactccattgtgacactctttggcctctctagcggcaat 1422 Query: 343 ccaagggcacggtcccagatgagctgaga 371 ||||| || |||||||| || |||||||| Sbjct: 1421 ccaagagctcggtcccaaattagctgaga 1393
>gb|U19481.1|CMU19481 Citrus maxima citrate synthase (cit) mRNA, nuclear gene encoding mitochondrial protein, complete cds Length = 1733 Score = 63.9 bits (32), Expect = 6e-07 Identities = 122/152 (80%) Strand = Plus / Minus Query: 439 tggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgccc 498 ||||| |||| ||| |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 1306 tggttcagcagcaccccactgtgagcatcaacatttggccaggggtttttaaccttgcct 1247 Query: 499 aactcggtgaggatcggaggcacaacttcatacaacttggagaccagttggaaaagtggg 558 | | || | || || ||||| |||||||||| ||| || ||||| ||||| | ||| Sbjct: 1246 agttttgttaatattgggggcaccacttcatacagcttagaaaccagctggaacaatgga 1187 Query: 559 tcctccggtaaatacttcaatgcaaactccct 590 || || || |||| |||||| ||||||||||| Sbjct: 1186 tcatcaggcaaatgcttcaaggcaaactccct 1155
>gb|AY428532.1| Citrus junos mitochondrial citrate synthase precursor mRNA, complete cds; nuclear gene for mitochondrial product Length = 1733 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 439 tggttaagcaacactccactgtgagcatcgacattaggccatgggttttttaccttgcc 497 ||||| |||| ||| |||||||||||||| ||||| ||||| |||||||| |||||||| Sbjct: 1281 tggttcagcagcaccccactgtgagcatcaacatttggccaggggtttttaaccttgcc 1223
>emb|X84226.1|NTCITSYNH N.tabacum mRNA for citrate synthase Length = 1747 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacactcttcggtctttcaagcggcaga 342 |||||||| ||||| || ||||||||||| ||||||||||| || || || || |||| Sbjct: 1472 ttcttgcaatggttctcaagccactccattgtgacactctttggcctctctagtggcaat 1413 Query: 343 ccaagggcacggtcccagatgagctgaga 371 ||||| || |||||||| || |||||||| Sbjct: 1412 ccaagagctcggtcccaaattagctgaga 1384 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 |||||||| || ||||| || || || |||| |||||| || ||||| || ||||| | | Sbjct: 1217 accagttgaaacagtggatcttcaggcaaatgcttcaaagcgaactctctctggcatgtg 1158 Query: 601 tatcgtggatctgtattgcgtagaactccatg 632 |||| |||||| || ||||| ||||||||||| Sbjct: 1157 tatcttggatcagtcttgcgcagaactccatg 1126
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 487 tttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 ||||||||||| | ||| |||||| ||||||||||||||||||||||| |||||| Sbjct: 12639764 tttaccttgcctatctcatggaggattggaggcacaacttcatacaactttgagacc 12639820 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 agtatcgtggatctgtattg 618 |||||||||||||||||||| Sbjct: 3591222 agtatcgtggatctgtattg 3591241
>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05, complete sequence Length = 129908 Score = 58.0 bits (29), Expect = 4e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 487 tttaccttgcccaactcggtgaggatcggaggcacaacttcatacaacttggagacc 543 ||||||||||| | ||| |||||| ||||||||||||||||||||||| |||||| Sbjct: 54750 tttaccttgcctatctcatggaggattggaggcacaacttcatacaactttgagacc 54806
>dbj|AB017159.1| Daucus carota mRNA for citrate synthase, complete cds Length = 1859 Score = 56.0 bits (28), Expect = 2e-04 Identities = 157/200 (78%) Strand = Plus / Minus Query: 454 ccactgtgagcatcgacattaggccatgggttttttaccttgcccaactcggtgaggatc 513 ||||| || ||||| ||||| ||||| ||||| ||||||||||| | || || || || Sbjct: 1394 ccactatgggcatcaacatttggccaggggttctttaccttgccaagttctgtaagaata 1335 Query: 514 ggaggcacaacttcatacaacttggagaccagttggaaaagtgggtcctccggtaaatac 573 |||||||| |||||| | | || || |||| ||| || ||||| || || ||||||| | Sbjct: 1334 ggaggcaccacttcaaagaggtttgaaaccaattgaaagagtggatcatcaggtaaatgc 1275 Query: 574 ttcaatgcaaactccctttggcacgagtatcgtggatctgtattgcgtagaactccatga 633 || || |||||||| || || || ||||| ||||||||| || || ||||| ||||| Sbjct: 1274 tttaaagcaaactctctctgacatatgtatcttggatctgtgttacgcagaacaccatgt 1215 Query: 634 ccatagccaggaacgacctt 653 ||||| |||||||| ||||| Sbjct: 1214 ccatatccaggaacaacctt 1195 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 283 ttcttgcagtggttttcgagccactccatggtgacact 320 ||||||||||||||||| ||||| ||||| || ||||| Sbjct: 1565 ttcttgcagtggttttcaagccattccattgtaacact 1528
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1112E06, complete sequence Length = 177488 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 511 atcggaggcacaacttcatacaacttg 537 ||||||||||||||||||||||||||| Sbjct: 112195 atcggaggcacaacttcatacaacttg 112221 Score = 46.1 bits (23), Expect = 0.15 Identities = 86/107 (80%) Strand = Plus / Plus Query: 541 accagttggaaaagtgggtcctccggtaaatacttcaatgcaaactccctttggcacgag 600 ||||||||||||||||| ||||| || || || |||| || ||||||||| || || | Sbjct: 112304 accagttggaaaagtggatcctcaggcaagtaattcagtgtaaactccctctgacaagta 112363 Query: 601 tatcgtggatctgtattgcgtagaactccatgaccatagccaggaac 647 ||||||||| | | || | | ||||||||||||| |||||||||| Sbjct: 112364 tatcgtggaacaatcttacacataactccatgaccaaagccaggaac 112410 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 actccactgtgagcatcgacatta 474 ||||||||||||||||| |||||| Sbjct: 112041 actccactgtgagcatcaacatta 112064
>gb|BC046571.1| Xenopus laevis citrate synthase, mRNA (cDNA clone MGC:53454 IMAGE:5572019), complete cds Length = 3221 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 451 actccactgtgagcatcgacattaggccatgggtt 485 ||||||||||||||||| ||||||||||| ||||| Sbjct: 1342 actccactgtgagcatccacattaggccaggggtt 1308
>gb|AC004521.3| Arabidopsis thaliana chromosome 2 clone F4I1 map m336, complete sequence Length = 118327 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggccatgggtt 485 ||||||| ||||| || |||||||||||||| ||||| ||||| ||||| Sbjct: 45585 agtggttcagcaagaccccactgtgagcatcaacatttggccacgggtt 45537
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 337 ggcagaccaagggcacggtcccagatgagctg 368 ||||| || ||||||||||||||||||||||| Sbjct: 1496164 ggcaggccgagggcacggtcccagatgagctg 1496133
>ref|XM_566478.1| Cryptococcus neoformans var. neoformans JEC21 citrate synthase (CNA00510) partial mRNA Length = 1611 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 337 ggcagaccaagggcacggtcccagatgagctgaga 371 |||| |||||| || |||||||||||||||||||| Sbjct: 1375 ggcataccaagagctcggtcccagatgagctgaga 1341
>emb|X17528.1|ATMTCITRN Arabidopsis thaliana mRNA for mitochondrial citrate synthetase Length = 1680 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 437 agtggttaagcaacactccactgtgagcatcgacattaggcca 479 ||||||| ||||| || |||||||||||||| ||||| ||||| Sbjct: 1306 agtggttcagcaagaccccactgtgagcatcaacatttggcca 1264
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 342 accaagggcacggtcccagatgagctgaga 371 |||||| || |||||||||||||||||||| Sbjct: 145402 accaagagctcggtcccagatgagctgaga 145373
>ref|XM_531634.2| PREDICTED: Canis familiaris similar to citrate synthase (LOC474403), mRNA Length = 1822 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 445 agcaacactccactgtgagcatcgacattaggccatgggttttttaccttgccc 498 |||| ||| |||||||||||||| ||||| ||||| ||||| || |||||||| Sbjct: 1383 agcagcacgccactgtgagcatctacattgggccaagggttcttggccttgccc 1330
>gb|AY144810.1| Saccharomyces bayanus clone Contig3962 CIT1 gene, complete cds Length = 1440 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 460 tgagcatcgacattaggccatgggtt 485 |||| ||||||||||||||||||||| Sbjct: 1244 tgagaatcgacattaggccatgggtt 1219
>ref|XM_235086.3| PREDICTED: Rattus norvegicus similar to citrate synthase (LOC299750), mRNA Length = 2834 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 444 aagcaacactccactgtgagcatcgacattaggccatgggtt 485 ||||| |||||||||||||||||| || || ||||| ||||| Sbjct: 1308 aagcagcactccactgtgagcatctacgttgggccaggggtt 1267
>gb|AC108433.9| Mus musculus chromosome 18, clone RP23-194M19, complete sequence Length = 188997 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 gcctagcaacacatcaaggcc 64 ||||||||||||||||||||| Sbjct: 47283 gcctagcaacacatcaaggcc 47303
>gb|BC080507.1| Xenopus tropicalis cDNA clone IMAGE:7027133 Length = 3218 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 454 ccactgtgagcatcgacattaggccatgg 482 ||||| |||||||| |||||||||||||| Sbjct: 1331 ccactatgagcatccacattaggccatgg 1303
>ref|XM_790049.1| PREDICTED: Strongylocentrotus purpuratus similar to citrate synthase (LOC590444), mRNA Length = 2793 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 457 ctgtgagcatcgacattaggccatgggtt 485 ||||||||||| ||||| ||||||||||| Sbjct: 1154 ctgtgagcatccacattgggccatgggtt 1126
>ref|NM_001017313.2| Xenopus tropicalis citrate synthase (cs), mRNA Length = 3200 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 454 ccactgtgagcatcgacattaggccatgg 482 ||||| |||||||| |||||||||||||| Sbjct: 1298 ccactatgagcatccacattaggccatgg 1270
>emb|CR855469.2| Xenopus tropicalis finished cDNA, clone TNeu053d23 Length = 3200 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 454 ccactgtgagcatcgacattaggccatgg 482 ||||| |||||||| |||||||||||||| Sbjct: 1298 ccactatgagcatccacattaggccatgg 1270
>gb|AC013255.5| Drosophila melanogaster clone BACR27A22, complete sequence Length = 148414 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccagatgagctgagatccaa 376 |||||||||||||||||||| Sbjct: 39003 ccagatgagctgagatccaa 38984
>gb|AC009843.9| Drosophila melanogaster clone BACR01G11, complete sequence Length = 192819 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ccagatgagctgagatccaa 376 |||||||||||||||||||| Sbjct: 11131 ccagatgagctgagatccaa 11150
>ref|XM_366541.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02617.4) partial mRNA Length = 1377 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 337 ggcagaccaagggcacggtcccagatgagctg 368 |||||||| || || ||||||||||||||||| Sbjct: 1313 ggcagacccagcgcccggtcccagatgagctg 1282
>gb|AY816050.1| Schistosoma japonicum SJCHGC00653 protein mRNA, complete cds Length = 1785 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 444 aagcaacactccactgtgagcatcgacattaggccatgggtttt 487 |||||| || |||||||| ||||| || ||||||||||| |||| Sbjct: 1256 aagcaaaacaccactgtgtgcatctacgttaggccatggatttt 1213
>gb|AC109131.8| Homo sapiens 3 BAC RP11-296J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118621 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 atttttcatgccaagtttga 99 |||||||||||||||||||| Sbjct: 3384 atttttcatgccaagtttga 3403
>gb|AC124722.3| Mus musculus BAC clone RP23-389E7 from chromosome 6, complete sequence Length = 193830 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cacattaagtacaaaaacgt 42 |||||||||||||||||||| Sbjct: 66876 cacattaagtacaaaaacgt 66857
>gb|AY223083.1| Schistosoma japonicum clone ZZD1315 mRNA sequence Length = 2013 Score = 40.1 bits (20), Expect = 9.0 Identities = 38/44 (86%) Strand = Plus / Minus Query: 444 aagcaacactccactgtgagcatcgacattaggccatgggtttt 487 |||||| || |||||||| ||||| || ||||||||||| |||| Sbjct: 1278 aagcaaaacaccactgtgtgcatctacgttaggccatggatttt 1235
>gb|AY126274.1| Candida krusei citrate synthase (CS1) gene, complete cds Length = 1371 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 tcgacattaggccatgggtt 485 |||||||||||||||||||| Sbjct: 1172 tcgacattaggccatgggtt 1153
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 460 tgagcatcgacattaggccatgggtttt 487 |||||||| |||||||||||||| |||| Sbjct: 550648 tgagcatcaacattaggccatggatttt 550621
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15, complete sequence Length = 130618 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 agtatcgtggatctgtattg 618 |||||||||||||||||||| Sbjct: 57506 agtatcgtggatctgtattg 57525
>gb|AC105245.4| Homo sapiens chromosome 18, clone CTD-2515C13, complete sequence Length = 200721 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ttgacagattgactgacttg 115 |||||||||||||||||||| Sbjct: 92185 ttgacagattgactgacttg 92204
>gb|AC090648.5| Genomic sequence for Mus musculus, clone RP23-331I23, complete sequence Length = 198695 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cacattaagtacaaaaacgt 42 |||||||||||||||||||| Sbjct: 127902 cacattaagtacaaaaacgt 127921
>gb|AC090649.4| Genomic sequence for Mus musculus, clone RP23-361O12, complete sequence Length = 211611 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cacattaagtacaaaaacgt 42 |||||||||||||||||||| Sbjct: 211463 cacattaagtacaaaaacgt 211444
>gb|AY909482.1| Siniperca chuatsi clone C226 archease mRNA, partial cds Length = 521 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 601 tatcgtggatctgtattgcg 620 |||||||||||||||||||| Sbjct: 323 tatcgtggatctgtattgcg 304
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0090H18 Length = 174842 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 tgccaagtttgacagattgactga 111 ||||||||||||||||||| |||| Sbjct: 84705 tgccaagtttgacagattggctga 84728
>gb|BC091367.1| Rattus norvegicus cDNA clone IMAGE:7319211 Length = 1863 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 caagacagtgtagtatcgtg 421 |||||||||||||||||||| Sbjct: 256 caagacagtgtagtatcgtg 275
>gb|AE002665.5| Drosophila melanogaster chromosome 3L, section 83 of 83 of the complete sequence Length = 491220 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccagatgagctgagatccaa 376 |||||||||||||||||||| Sbjct: 409957 ccagatgagctgagatccaa 409938 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,675,687 Number of Sequences: 3902068 Number of extensions: 4675687 Number of successful extensions: 73354 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73002 Number of HSP's gapped (non-prelim): 348 length of query: 657 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 634 effective length of database: 17,143,297,704 effective search space: 10868850744336 effective search space used: 10868850744336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)