ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdp01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF542188.1| Triticum aestivum cyc07 mRNA, complete cds Length = 820 Score = 741 bits (374), Expect = 0.0 Identities = 476/506 (94%), Gaps = 5/506 (0%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttca-caccaacatcctcc-ttgtagtcaccgtgcacctccatga- 297 ||||||||||||| || | |||||||||||||| |||||||| ||||| ||||| |||| Sbjct: 810 caggcctgtcaaggtttaacaccaacatcctccnttgtagtccccgtgaacctcnatgaa 751 Query: 298 gctttcccaggtc-aaacttcggggccttcagga-tcttcaccttgcggacgtacacgtt 355 |||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||| Sbjct: 750 gcttccccaggtngaaacttgggggccttcaggaatcttcaccttgcgnacgtacacgtt 691 Query: 356 ctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggat 415 ||| || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 690 ctgnaggggnaagatgcctgaggtggcnttctcaatctcctttccaatcacctcagggat 631 Query: 416 gaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaac 475 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 630 gaacttgttcacaagctcntttaagtcacagcttgcagcttggttgaccatgatctcaac 571 Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 570 catcttgcggcggatctgtctgatctgacttgcttgggcatagcaagtgcgcttcacctg 511 Query: 536 gtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggt 595 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 510 gtttgggcgtctcttggtgaagccaatggcgaacatgcggagcatgtagttgtcagtggt 451 Query: 596 cttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagctt 655 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 450 cttcacatccacatgagcctcaatgagtgtctgccacttcctcacaagagacctgagctt 391 Query: 656 gtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctc 715 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 gtcagtggtgaagtccatgccccagaagtttgtgaggacattcatcccttgcacatcctc 331 Query: 716 agcacggagtctgatcttnctgtagg 741 |||||||||||||||||| ||||||| Sbjct: 330 agcacggagtctgatcttcctgtagg 305
>gb|AF479043.1| Triticum aestivum 40S ribosomal protein mRNA, partial cds Length = 342 Score = 567 bits (286), Expect = e-158 Identities = 327/340 (96%), Gaps = 3/340 (0%) Strand = Plus / Minus Query: 191 ctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccatcag---gcct 247 |||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| Sbjct: 342 ctactcagcagcagcaacctcctccgcaccaggaatgacctcgtccccatcagcaggcct 283 Query: 248 gtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccag 307 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 282 gtcaagcttcacaccaacatcctccttgtagtcaccgtgaacctccatgagcttccccag 223 Query: 308 gtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaa 367 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 222 gtcgaacttgggggccttcaggatcttcaccttgcggacgtacacgttctggagggggaa 163 Query: 368 gatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaacttgttcac 427 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 162 gatgcttgaggtggccttctcaatctcctttccgatcacctcagggatgaacttgttcac 103 Query: 428 aagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatcttccggcg 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 102 aagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatcttgcggcg 43 Query: 488 gatctgtctgatctgacttgcttgagcatagcaagtgcgc 527 |||||||||||||||||||||||| ||||||||||||||| Sbjct: 42 gatctgtctgatctgacttgcttgggcatagcaagtgcgc 3
>gb|AY290725.1| Triticum aestivum ribosomal protein S3a-like mRNA, partial sequence Length = 885 Score = 567 bits (286), Expect = e-158 Identities = 356/380 (93%), Gaps = 2/380 (0%) Strand = Plus / Minus Query: 363 gggaagatgcttgaggtggccttctcaatctcctttccaatcacctcaggg-atgaactt 421 ||||| |||| | ||||| || | ||||| ||||||| ||||||||||||| |||||||| Sbjct: 685 gggaanatgcntnaggtg-ccntntcaatntcctttcnaatcacctcaggggatgaactt 627 Query: 422 gttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatctt 481 ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| Sbjct: 626 gttcacaagctcctttaagtcacagcttgcagcttggttgaccaatatctcanccatctt 567 Query: 482 ccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttgg 541 ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 566 gcggcggatctgtctgatctgactngcttgggcatagcaagtgcgcttcacctggtttgg 507 Query: 542 gcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcac 601 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 506 gcgtctcttggtgaagccaatggcgaacatgcggagcatgtagttgtcagtggtcttcac 447 Query: 602 atcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcagt 661 ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 446 atccacatgagcctcaatgagtgtctgccacttcctcacaagagacttgagcttgtcagt 387 Query: 662 ggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcacg 721 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 ggtgaagtccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcacg 327 Query: 722 gagtctgatcttnctgtagg 741 |||||||||||| ||||||| Sbjct: 326 gagtctgatcttcctgtagg 307
>dbj|D26060.1|RICT151 Oryza sativa mRNA for cyc07, complete cds Length = 1065 Score = 303 bits (153), Expect = 4e-79 Identities = 386/464 (83%) Strand = Plus / Minus Query: 276 tagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttc 335 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| Sbjct: 799 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 740 Query: 336 accttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcc 395 || |||||||| |||| ||||| || ||||| || || || || ||||||||||| ||| Sbjct: 739 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 680 Query: 396 tttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagct 455 || ||||| || ||||| |||||||| || ||||| ||||| |||||||||| ||| Sbjct: 679 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 620 Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagca 515 |||||| ||||||| ||||||||||| || || ||||||||||||||||| ||||||||| Sbjct: 619 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgagca 560 Query: 516 tagcaagtgcgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcgg 575 |||||||| | ||| |||||||| || || | |||||||||||| || |||| || Sbjct: 559 tagcaagtcctcttcacctggttaggccgccgcttggtgaagccgatacagaacagacgc 500 Query: 576 agcatgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 |||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||||| Sbjct: 499 agcatgtagccgtctgtggttttgacatccacatgagcctcaatcagtgtctgccacttc 440 Query: 636 ctcacaagagacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggaca 695 | ||||| || |||||||| || || || || ||||||||| ||||| ||||| || Sbjct: 439 ttaacaagtgatctgagcttatcggtagtaaacgacatgccccaaaagttggtgagcacg 380 Query: 696 ttcatcccttgcacatcctcagcacggagtctgatcttnctgta 739 ||| |||||||||||||||||||||| ||||||||||| ||||| Sbjct: 379 ttcttcccttgcacatcctcagcacgaagtctgatcttcctgta 336
>dbj|AK104699.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C03, full insert sequence Length = 942 Score = 303 bits (153), Expect = 4e-79 Identities = 386/464 (83%) Strand = Plus / Minus Query: 276 tagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttc 335 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| Sbjct: 685 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 626 Query: 336 accttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcc 395 || |||||||| |||| ||||| || ||||| || || || || ||||||||||| ||| Sbjct: 625 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 566 Query: 396 tttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagct 455 || ||||| || ||||| |||||||| || ||||| ||||| |||||||||| ||| Sbjct: 565 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 506 Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagca 515 |||||| ||||||| ||||||||||| || || ||||||||||||||||| ||||||||| Sbjct: 505 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgagca 446 Query: 516 tagcaagtgcgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcgg 575 |||||||| | ||| |||||||| || || | |||||||||||| || |||| || Sbjct: 445 tagcaagtcctcttcacctggttaggccgccgcttggtgaagccgatacagaacagacgc 386 Query: 576 agcatgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 |||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||||| Sbjct: 385 agcatgtagccgtctgtggttttgacatccacatgagcctcaatcagtgtctgccacttc 326 Query: 636 ctcacaagagacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggaca 695 | ||||| || |||||||| || || || || ||||||||| ||||| ||||| || Sbjct: 325 ttaacaagtgatctgagcttatcggtagtaaacgacatgccccaaaagttggtgagcacg 266 Query: 696 ttcatcccttgcacatcctcagcacggagtctgatcttnctgta 739 ||| |||||||||||||||||||||| ||||||||||| ||||| Sbjct: 265 ttcttcccttgcacatcctcagcacgaagtctgatcttcctgta 222
>dbj|AK104243.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D02, full insert sequence Length = 1032 Score = 303 bits (153), Expect = 4e-79 Identities = 386/464 (83%) Strand = Plus / Minus Query: 276 tagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttc 335 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| Sbjct: 775 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 716 Query: 336 accttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcc 395 || |||||||| |||| ||||| || ||||| || || || || ||||||||||| ||| Sbjct: 715 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 656 Query: 396 tttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagct 455 || ||||| || ||||| |||||||| || ||||| ||||| |||||||||| ||| Sbjct: 655 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 596 Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagca 515 |||||| ||||||| ||||||||||| || || ||||||||||||||||| ||||||||| Sbjct: 595 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgagca 536 Query: 516 tagcaagtgcgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcgg 575 |||||||| | ||| |||||||| || || | |||||||||||| || |||| || Sbjct: 535 tagcaagtcctcttcacctggttaggccgccgcttggtgaagccgatacagaacagacgc 476 Query: 576 agcatgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 |||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||||| Sbjct: 475 agcatgtagccgtctgtggttttgacatccacatgagcctcaatcagtgtctgccacttc 416 Query: 636 ctcacaagagacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggaca 695 | ||||| || |||||||| || || || || ||||||||| ||||| ||||| || Sbjct: 415 ttaacaagtgatctgagcttatcggtagtaaacgacatgccccaaaagttggtgagcacg 356 Query: 696 ttcatcccttgcacatcctcagcacggagtctgatcttnctgta 739 ||| |||||||||||||||||||||| ||||||||||| ||||| Sbjct: 355 ttcttcccttgcacatcctcagcacgaagtctgatcttcctgta 312
>dbj|AK069251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013H23, full insert sequence Length = 1097 Score = 303 bits (153), Expect = 4e-79 Identities = 386/464 (83%) Strand = Plus / Minus Query: 276 tagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttc 335 |||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| Sbjct: 776 tagtcaccatgcacctccatgagcttccccaggtcaaatttcggggcctttagaatcttc 717 Query: 336 accttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcc 395 || |||||||| |||| ||||| || ||||| || || || || ||||||||||| ||| Sbjct: 716 actttgcggacaaacacattctgaagggggaaaatactggatgtcgccttctcaatttcc 657 Query: 396 tttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagct 455 || ||||| || ||||| |||||||| || ||||| ||||| |||||||||| ||| Sbjct: 656 ttcccaataacttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcc 597 Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagca 515 |||||| ||||||| ||||||||||| || || ||||||||||||||||| ||||||||| Sbjct: 596 tggttggccatgatttcaaccatcttgcgacgaatctgtctgatctgactcgcttgagca 537 Query: 516 tagcaagtgcgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcgg 575 |||||||| | ||| |||||||| || || | |||||||||||| || |||| || Sbjct: 536 tagcaagtcctcttcacctggttaggccgccgcttggtgaagccgatacagaacagacgc 477 Query: 576 agcatgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 |||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||||| Sbjct: 476 agcatgtagccgtctgtggttttgacatccacatgagcctcaatcagtgtctgccacttc 417 Query: 636 ctcacaagagacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggaca 695 | ||||| || |||||||| || || || || ||||||||| ||||| ||||| || Sbjct: 416 ttaacaagtgatctgagcttatcggtagtaaacgacatgccccaaaagttggtgagcacg 357 Query: 696 ttcatcccttgcacatcctcagcacggagtctgatcttnctgta 739 ||| |||||||||||||||||||||| ||||||||||| ||||| Sbjct: 356 ttcttcccttgcacatcctcagcacgaagtctgatcttcctgta 313
>ref|XM_464995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1063 Score = 293 bits (148), Expect = 4e-76 Identities = 411/499 (82%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||| | || Sbjct: 774 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccatcaact 715 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || ||||||||||| ||||||| ||||||||||||||||| | |||| || |||| Sbjct: 714 tcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacacattttgga 655 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||| || ||||| || | |||||| |||||||||||||| || ||||||||||| | Sbjct: 654 gagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagggatgaatt 595 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | || || || ||||||||||| ||| || |||||| |||||||||||||||||| Sbjct: 594 ttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctcaaccatct 535 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 ||||||||||||| | |||||| || || ||||| || || || ||||| ||||| |||| Sbjct: 534 tccggcggatctgccggatctggctagcctgagcgtaacaggtacgcttcacctgatttg 475 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| | ||||||||| |||||| ||||| |||||||||||| || || |||||||| | Sbjct: 474 ggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtagttatctgtggtcttaa 415 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || ||||| | || ||||| ||| | || | ||||| || ||||| | Sbjct: 414 catccacatgggcttcaatcaatgtttgccatttcttgaccaaggacctaagtttgtccg 355 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| ||| |||||||||||| || |||||||||||| |||| || ||||||||||||| Sbjct: 354 tggtaaaactcatgccccagaaattcgtgaggacattcctcccctgaacatcctcagcac 295 Query: 721 ggagtctgatcttnctgta 739 | ||||| | ||| ||||| Sbjct: 294 gaagtctaaccttcctgta 276
>ref|XM_506775.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1115_D03.49 mRNA Length = 1171 Score = 293 bits (148), Expect = 4e-76 Identities = 411/499 (82%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||| | || Sbjct: 810 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccatcaact 751 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || ||||||||||| ||||||| ||||||||||||||||| | |||| || |||| Sbjct: 750 tcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacacattttgga 691 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||| || ||||| || | |||||| |||||||||||||| || ||||||||||| | Sbjct: 690 gagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagggatgaatt 631 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | || || || ||||||||||| ||| || |||||| |||||||||||||||||| Sbjct: 630 ttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctcaaccatct 571 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 ||||||||||||| | |||||| || || ||||| || || || ||||| ||||| |||| Sbjct: 570 tccggcggatctgccggatctggctagcctgagcgtaacaggtacgcttcacctgatttg 511 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| | ||||||||| |||||| ||||| |||||||||||| || || |||||||| | Sbjct: 510 ggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtagttatctgtggtcttaa 451 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || ||||| | || ||||| ||| | || | ||||| || ||||| | Sbjct: 450 catccacatgggcttcaatcaatgtttgccatttcttgaccaaggacctaagtttgtccg 391 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| ||| |||||||||||| || |||||||||||| |||| || ||||||||||||| Sbjct: 390 tggtaaaactcatgccccagaaattcgtgaggacattcctcccctgaacatcctcagcac 331 Query: 721 ggagtctgatcttnctgta 739 | ||||| | ||| ||||| Sbjct: 330 gaagtctaaccttcctgta 312
>dbj|AK099131.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M05, full insert sequence Length = 1063 Score = 293 bits (148), Expect = 4e-76 Identities = 411/499 (82%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||| | || Sbjct: 774 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccatcaact 715 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || ||||||||||| ||||||| ||||||||||||||||| | |||| || |||| Sbjct: 714 tcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacacattttgga 655 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||| || ||||| || | |||||| |||||||||||||| || ||||||||||| | Sbjct: 654 gagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagggatgaatt 595 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | || || || ||||||||||| ||| || |||||| |||||||||||||||||| Sbjct: 594 ttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctcaaccatct 535 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 ||||||||||||| | |||||| || || ||||| || || || ||||| ||||| |||| Sbjct: 534 tccggcggatctgccggatctggctagcctgagcgtaacaggtacgcttcacctgatttg 475 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| | ||||||||| |||||| ||||| |||||||||||| || || |||||||| | Sbjct: 474 ggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtagttatctgtggtcttaa 415 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || ||||| | || ||||| ||| | || | ||||| || ||||| | Sbjct: 414 catccacatgggcttcaatcaatgtttgccatttcttgaccaaggacctaagtttgtccg 355 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| ||| |||||||||||| || |||||||||||| |||| || ||||||||||||| Sbjct: 354 tggtaaaactcatgccccagaaattcgtgaggacattcctcccctgaacatcctcagcac 295 Query: 721 ggagtctgatcttnctgta 739 | ||||| | ||| ||||| Sbjct: 294 gaagtctaaccttcctgta 276
>dbj|AK059647.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C03, full insert sequence Length = 1171 Score = 285 bits (144), Expect = 1e-73 Identities = 410/499 (82%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||| | || Sbjct: 810 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccatcaact 751 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || ||||||||||| ||||||| ||||||||||||||||| | |||| || |||| Sbjct: 750 tcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacacattttgga 691 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||| || ||||| || | |||||| |||||||||||||| || ||||||||||| | Sbjct: 690 gagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagggatgaatt 631 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | || || || ||||||||||| ||| || |||||| |||||||||||||||||| Sbjct: 630 ttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctcaaccatct 571 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 ||||| ||||||| | |||||| || || ||||| || || || ||||| ||||| |||| Sbjct: 570 tccggaggatctgccggatctggctagcctgagcgtaacaggtacgcttcacctgatttg 511 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| | ||||||||| |||||| ||||| |||||||||||| || || |||||||| | Sbjct: 510 ggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtagttatctgtggtcttaa 451 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || ||||| | || ||||| ||| | || | ||||| || ||||| | Sbjct: 450 catccacatgggcttcaatcaatgtttgccatttcttgaccaaggacctaagtttgtccg 391 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| ||| |||||||||||| || |||||||||||| |||| || ||||||||||||| Sbjct: 390 tggtaaaactcatgccccagaaattcgtgaggacattcctcccctgaacatcctcagcac 331 Query: 721 ggagtctgatcttnctgta 739 | ||||| | ||| ||||| Sbjct: 330 gaagtctaaccttcctgta 312
>gb|AY109383.1| Zea mays CL7224_1 mRNA sequence Length = 1236 Score = 280 bits (141), Expect = 6e-72 Identities = 398/484 (82%) Strand = Plus / Plus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 ||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||||| Sbjct: 383 caggcctctcaagcttcacaccaacatcctctttgtagtcgccatgaacctccatgagct 442 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || || ||||| ||| |||| || |||||||||||||||| | | ||||| || | Sbjct: 443 tcccaagatcgaacttggggnccttgagtatcttcaccttgcggatgaagacgttttgaa 502 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||||||||| ||||| | ||||||||||||||| ||||| || || || ||||||| Sbjct: 503 gtgggaagatgctggaggtagacttctcaatctccttaccaataacttctggaatgaact 562 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | ||||| || |||| |||||| | | ||| ||||||| ||| ||||||||||||| Sbjct: 563 tcgaaacaagttctttcaggtcacatgtagaagcctggttgatcataatctcaaccatct 622 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 | ||||||||||| | |||||| ||| ||||||||||| || | |||||||||||||| Sbjct: 623 tacggcggatctgacggatctgggatgcctgagcatagcaggttctcttgacctggtttg 682 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| |||||||||||||| ||| |||| || | |||||| ||||| || ||||| | Sbjct: 683 ggcgcctcttggtgaagccgatgcagaacaaacgcaacatgtagttgtcggttgtcttga 742 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || || || | |||||||||||| |||| || || || || || |||| Sbjct: 743 catcaacatgggcttcgattaatgtctgccacttcttcactagggatctcagtttatcag 802 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| |||| ||| ||||| ||||||||||| |||||| | ||||||||||| ||||||| Sbjct: 803 tggtaaaattcataccccaaaagtttgtgagcacattcctgccttgcacatcttcagcac 862 Query: 721 ggag 724 |||| Sbjct: 863 ggag 866
>gb|AF052503.1|AF052503 Oryza sativa S-phase-specific ribosomal protein (RSPSP94) mRNA, complete cds Length = 1027 Score = 264 bits (133), Expect = 4e-67 Identities = 410/500 (82%), Gaps = 2/500 (0%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||||||| | || Sbjct: 771 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacctccatcaact 712 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || ||||||||||| ||||||| ||||||||||||||||| | |||| || |||| Sbjct: 711 tcccaagatcaaacttcggtgccttcaagatcttcaccttgcggatgaacacattttgga 652 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||| || ||||| || | |||||| |||||||||||||| || ||||||||||| | Sbjct: 651 gagggaatatacttgaagttgacttctcgatctcctttccaatgacttcagggatgaatt 592 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | || || || ||||||||||| ||| || |||||| |||||||||||||||||| Sbjct: 591 ttgaaaccagttctttcaagtcacatgttgatgcctggttggccatgatctcaaccatct 532 Query: 481 tccggc-ggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggttt 539 |||||| ||||||| | |||||| | | | ||||| || || || ||||| ||||| ||| Sbjct: 531 tccggcgggatctgccggatctggc-tacctgagcgtaacaggtacgcttcacctgattt 473 Query: 540 gggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttc 599 ||||| | ||||||||| |||||| ||||| |||||||||||| || || |||||||| Sbjct: 472 gggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtagttatctgtggtctta 413 Query: 600 acatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtca 659 ||||| ||||| || ||||| | || ||||| ||| | || | ||||| || ||||| Sbjct: 412 acatccacatgggcttcaatcaatgtttgccatttcttgaccaaggacctaagtttgtcc 353 Query: 660 gtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagca 719 ||||| ||| |||||||||||| || |||||||||||| |||| || |||||||||||| Sbjct: 352 gtggtaaaactcatgccccagaaattcgtgaggacattcctcccctgaacatcctcagca 293 Query: 720 cggagtctgatcttnctgta 739 || ||||| | ||| ||||| Sbjct: 292 cgaagtctaaccttcctgta 273
>gb|BT016390.1| Zea mays clone Contig223 mRNA sequence Length = 1104 Score = 262 bits (132), Expect = 1e-66 Identities = 407/499 (81%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 ||||||| ||||||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 812 caggcctctcaagcttcacaccaacatcctctttgtagtcgccatgaacctccatgagtt 753 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || || ||||| |||||||| || |||||||||||||||| | | ||||| || | Sbjct: 752 tcccaagatcgaacttgggggccttgagtatcttcaccttgcggatgaagacgttttgaa 693 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||||||||| ||||| | |||||||||||| || ||||| || || || ||||||| Sbjct: 692 gtgggaagatgctggaggtagacttctcaatctctttaccaataacttctggaatgaact 633 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | ||||| || |||| |||||| | | ||| ||||||| ||| ||||||||||||| Sbjct: 632 tcgaaacaagttctttcaggtcacatgtagaagcctggttgatcataatctcaaccatct 573 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 | ||||||||||| | |||||| ||| ||||||||||| || | |||||| ||||||| Sbjct: 572 ttcggcggatctgacggatctgggatgcctgagcatagcaggttctcttgacttggtttg 513 Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 |||| |||||||||||||| ||| |||| || | |||||| ||||| || ||||| | Sbjct: 512 ggcgcctcttggtgaagccgatgcagaacaaacgcaacatgtagttgtcggttgtcttga 453 Query: 601 catcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtcag 660 |||| ||||| || || || | |||||||||||| |||| || || || || || |||| Sbjct: 452 catcaacatgggcttcgattaatgtctgccacttcttcactagggatctcagtttatcag 393 Query: 661 tggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcctcagcac 720 |||| |||| ||| ||||| ||||||||||| |||||| | || |||||||| ||||||| Sbjct: 392 tggtaaaattcataccccaaaagtttgtgagcacattcctgccctgcacatcttcagcac 333 Query: 721 ggagtctgatcttnctgta 739 |||| ||||| || ||||| Sbjct: 332 ggagcctgattttcctgta 314
>dbj|AK071037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079A13, full insert sequence Length = 1118 Score = 252 bits (127), Expect = 1e-63 Identities = 413/507 (81%), Gaps = 1/507 (0%) Strand = Plus / Minus Query: 227 gacctcatctccatcaggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtg 286 |||||||||| | ||||||| || |||||| ||||| |||||||| || || || || Sbjct: 855 gacctcatcttctgcaggcctctcgagcttcgtcccaacgtcctcctt-taatctccatg 797 Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 |||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||| || Sbjct: 796 aacctccataagcttgcccaggtcaaattttggggccttgaggatcttgactttgcgcac 737 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 736 aaacacattctgaagcgggaagatgcttgatgtggccttctcgatttccttcccaatcac 677 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 |||||| ||||| || ||| |||||||| | |||||| || || ||||| ||||| Sbjct: 676 ctcaggaatgaattttgacaccagctccttgagatcacaggatgatgcctggttcaccat 617 Query: 467 gatctcaaccatcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcg 526 | |||| |||||||| || |||||||||| ||||| ||||||||||||||||| || || Sbjct: 616 ggtctccaccatcttgcgacggatctgtcgaatctggcttgcttgagcatagcatgtccg 557 Query: 527 cttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaatt 586 ||||| || ||||| | |||||||||||||||| | || | || |||||||| || Sbjct: 556 tttgacttgatttggcctcctcttggtgaagccaacgcagaagagacgcagcatgtagtt 497 Query: 587 gtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagaga 646 |||||||||| ||||| ||||||||||| || || |||||||| ||| | || | || Sbjct: 496 atcagtggtctctacatccacatgagcctctattagcgtctgccatttcttgaccaatga 437 Query: 647 cctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttg 706 ||||||||||| || |||||| |||||||||||||||||| || ||||| |||| || Sbjct: 436 tctgagcttgtcggtcgtgaaactcatgccccagaagtttgtaagaacatttttcccctg 377 Query: 707 cacatcctcagcacggagtctgatctt 733 ||||||||| ||||| ||||||||||| Sbjct: 376 cacatcctcggcacgtagtctgatctt 350
>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds Length = 382 Score = 252 bits (127), Expect = 1e-63 Identities = 225/257 (87%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 190 tctactcagcagcagcaacctcctccgcaccaggaatgacctcatctccatcag---gcc 246 ||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| ||| Sbjct: 257 tctactcggcagcagcaacctcctcagcaccggggatgacctcatctccatcagcaggcc 198 Query: 247 tgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttccca 306 |||| | ||| ||||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct: 197 tgtccaacttggtaccaacatcttccttgtagtcaccatgcacctccatgagcttcccca 138 Query: 307 ggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcggga 366 | || ||||| || ||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 137 gatcgaacttgggtgccttcaagatcttcaccttgcggacatacacgttctggagcggga 78 Query: 367 agatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaacttgttca 426 ||||||| | || |||||||| ||||||||||| |||| ||||||||||||||| | || Sbjct: 77 agatgctcggtgtcgccttctcgatctcctttccgatcagctcagggatgaacttctgca 18 Query: 427 caagctccttcaagtca 443 | |||||||||| |||| Sbjct: 17 ccagctccttcaggtca 1 Score = 56.0 bits (28), Expect = 2e-04 Identities = 35/36 (97%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 95 atcagccatcaaaactgactaca-aagttcacgaca 129 ||||||||||||||||||||||| |||||||||||| Sbjct: 365 atcagccatcaaaactgactacagaagttcacgaca 330
>emb|AJ515028.1|CAR515028 Cicer arietinum mRNA for ribosomal protein S3a (rs3a gene) Length = 1026 Score = 190 bits (96), Expect = 5e-45 Identities = 342/424 (80%) Strand = Plus / Minus Query: 275 gtagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||||||| || |||||||| || ||||| || |||||||| || | |||| |||||| Sbjct: 755 gtagtcaccatgaacctccatcagttttccaagatcaaacttgggagatttcaagatctt 696 Query: 335 caccttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctc 394 || ||||| | | |||||||| || ||| | ||||| || || |||||||||||||| Sbjct: 695 aactttgcgaataaaaacgttctgcagagggtaaatgctagatgtagccttctcaatctc 636 Query: 395 ctttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagc 454 ||||||||||| ||||||||| |||||| |||||||| ||||| ||||| || || Sbjct: 635 ctttccaatcatctcagggataaacttgcgaacaagctctttcaaatcacacgatgttgc 576 Query: 455 ttggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagc 514 |||||| ||||||||||| |||||||| |||||||||||||||||| || | |||||| Sbjct: 575 ttggttaaccatgatctccctcatcttcctgcggatctgtctgatctggctggattgagc 516 Query: 515 atagcaagtgcgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcg 574 ||| || || | ||| || ||||| |||||||||||| ||||||||| ||||| | Sbjct: 515 ataacaggttctcttcacttggttactgcgtctcttggtaaagccaatgcagaacattct 456 Query: 575 gagcatgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccactt 634 | | ||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || Sbjct: 455 caaggtataattatcagtggtcttaacatccacatgagcttcaatgagagtttgccattt 396 Query: 635 cctcacaagagacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggac 694 | || | |||||||||||||||||||||||||||||| || | ||||| |||||||| Sbjct: 395 acggaccaaagacctgagcttgtcagtggtgaaatccataccataaaagttggtgaggac 336 Query: 695 attc 698 |||| Sbjct: 335 attc 332
>gb|BT019079.1| Zea mays clone Contig661.F mRNA sequence Length = 1229 Score = 172 bits (87), Expect = 1e-39 Identities = 264/323 (81%) Strand = Plus / Plus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 ||||||| ||||||||||||||||| ||||| |||||||| || || |||||||| | || Sbjct: 281 caggcctctcaagcttcacaccaacgtcctctttgtagtcgccatgaacctccatcaact 340 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 | || || |||||||| |||||||| || |||||||||||||||| | | ||||| || | Sbjct: 341 tcccgagatcaaacttgggggccttgagtatcttcaccttgcggatgaagacgttttgaa 400 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaact 420 | ||||||||||| ||||| | |||||||||||| || ||||| || || || ||||||| Sbjct: 401 gtgggaagatgctggaggtagacttctcaatctctttgccaataacttccggaatgaact 460 Query: 421 tgttcacaagctccttcaagtcacagcttgcagcttggttgaccatgatctcaaccatct 480 | ||||| || || | |||||| | | ||| ||||||| ||| ||||||||||||| Sbjct: 461 tagaaacaagttctttaaggtcacatgtagaagcctggttgatcataatctcaaccatct 520 Query: 481 tccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttg 540 | ||||| ||||| | ||||| ||| ||||||||||| || | |||||||||||||| Sbjct: 521 tgcggcgaatctgccgaatctgggatgcctgagcatagcaggttctcttgacctggtttg 580 Query: 541 ggcgtctcttggtgaagccaatg 563 |||| |||||||| || |||||| Sbjct: 581 ggcgcctcttggtaaaaccaatg 603
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 149 bits (75), Expect = 2e-32 Identities = 84/87 (96%) Strand = Plus / Plus Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 46625 ggcgtttcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagttgtcttca 46684 Query: 601 catcgacatgagcctcaatgagggtct 627 |||| |||||||||||||||||||||| Sbjct: 46685 catccacatgagcctcaatgagggtct 46711 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 |||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 46834 catgtagttgtcagttgtcttcacatccacatgagcctcaatgagggtctgc 46885 Score = 71.9 bits (36), Expect = 3e-09 Identities = 45/48 (93%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggt 625 |||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 47005 catgtagttgtcagttgtcttcacatccacatgagcctcaatgagggt 47052
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 141 bits (71), Expect = 4e-30 Identities = 164/195 (84%) Strand = Plus / Minus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||| Sbjct: 5245063 cacctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggac 5245004 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| || ||||| || || || || ||||||||||| ||||| ||||| || Sbjct: 5245003 aaacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataac 5244944 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||| |||||||| || ||||| ||||| |||||||||| ||| |||||| |||| Sbjct: 5244943 ttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccat 5244884 Query: 467 gatctcaaccatctt 481 ||| ||||||||||| Sbjct: 5244883 gatttcaaccatctt 5244869 Score = 97.6 bits (49), Expect = 5e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 491 ctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctctt 550 ||||||||||||||| ||||||||||||||||| | ||| |||||||| || || | ||| Sbjct: 5244764 ctgtctgatctgactcgcttgagcatagcaagtcctcttcacctggttaggccgccgctt 5244705 Query: 551 ggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatg 610 ||||||||| || |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct: 5244704 ggtgaagccgatacagaacagacgcagcatgtagccgtctgtggttttgacatccacatg 5244645 Query: 611 agcctcaatgagggtctgccacttcctcacaagagacctgagctt 655 ||||||||| || |||||||||||| | ||||| || |||||||| Sbjct: 5244644 agcctcaatcagtgtctgccacttcttaacaagtgatctgagctt 5244600 Score = 73.8 bits (37), Expect = 7e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 |||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | Sbjct: 5244509 cccaaaagttggtgagcacgttcttcccttgcacatcctcagcacgaagtctgatcttcc 5244450 Query: 736 tgta 739 |||| Sbjct: 5244449 tgta 5244446
>gb|AC146581.1| Oryza sativa (japonica cultivar-group) Nipponbare strain chromosome 3 clone OSJNBa0021H20, complete sequence Length = 133079 Score = 141 bits (71), Expect = 4e-30 Identities = 164/195 (84%) Strand = Plus / Minus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||| Sbjct: 68465 cacctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggac 68406 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| || ||||| || || || || ||||||||||| ||||| ||||| || Sbjct: 68405 aaacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataac 68346 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||| |||||||| || ||||| ||||| |||||||||| ||| |||||| |||| Sbjct: 68345 ttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccat 68286 Query: 467 gatctcaaccatctt 481 ||| ||||||||||| Sbjct: 68285 gatttcaaccatctt 68271 Score = 97.6 bits (49), Expect = 5e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 491 ctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctctt 550 ||||||||||||||| ||||||||||||||||| | ||| |||||||| || || | ||| Sbjct: 68166 ctgtctgatctgactcgcttgagcatagcaagtcctcttcacctggttaggccgccgctt 68107 Query: 551 ggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatg 610 ||||||||| || |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct: 68106 ggtgaagccgatacagaacagacgcagcatgtagccgtctgtggttttgacatccacatg 68047 Query: 611 agcctcaatgagggtctgccacttcctcacaagagacctgagctt 655 ||||||||| || |||||||||||| | ||||| || |||||||| Sbjct: 68046 agcctcaatcagtgtctgccacttcttaacaagtgatctgagctt 68002 Score = 73.8 bits (37), Expect = 7e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 |||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | Sbjct: 67911 cccaaaagttggtgagcacgttcttcccttgcacatcctcagcacgaagtctgatcttcc 67852 Query: 736 tgta 739 |||| Sbjct: 67851 tgta 67848
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 141 bits (71), Expect = 4e-30 Identities = 164/195 (84%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||| Sbjct: 11455 cacctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggac 11514 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| || ||||| || || || || ||||||||||| ||||| ||||| || Sbjct: 11515 aaacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataac 11574 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||| |||||||| || ||||| ||||| |||||||||| ||| |||||| |||| Sbjct: 11575 ttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccat 11634 Query: 467 gatctcaaccatctt 481 ||| ||||||||||| Sbjct: 11635 gatttcaaccatctt 11649 Score = 97.6 bits (49), Expect = 5e-17 Identities = 136/165 (82%) Strand = Plus / Plus Query: 491 ctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctctt 550 ||||||||||||||| ||||||||||||||||| | ||| |||||||| || || | ||| Sbjct: 11754 ctgtctgatctgactcgcttgagcatagcaagtcctcttcacctggttaggccgccgctt 11813 Query: 551 ggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatg 610 ||||||||| || |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct: 11814 ggtgaagccgatacagaacagacgcagcatgtagccgtctgtggttttgacatccacatg 11873 Query: 611 agcctcaatgagggtctgccacttcctcacaagagacctgagctt 655 ||||||||| || |||||||||||| | ||||| || |||||||| Sbjct: 11874 agcctcaatcagtgtctgccacttcttaacaagtgatctgagctt 11918 Score = 73.8 bits (37), Expect = 7e-10 Identities = 57/64 (89%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 |||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | Sbjct: 12009 cccaaaagttggtgagcacgttcttcccttgcacatcctcagcacgaagtctgatcttcc 12068 Query: 736 tgta 739 |||| Sbjct: 12069 tgta 12072
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 141 bits (71), Expect = 4e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||| || Sbjct: 12315297 cacctccataagcttgcccaggtcaaattttggggccttgaggatcttgactttgcgcac 12315356 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 12315357 aaacacattctgaagcgggaagatgcttgatgtggccttctcgatttccttcccaatcac 12315416 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 |||||| ||||| || ||| |||||||| | |||||| || || ||||| ||||| Sbjct: 12315417 ctcaggaatgaattttgacaccagctccttgagatcacaggatgatgcctggttcaccat 12315476 Query: 467 gatctcaaccatcttccggcggatctg 493 |||||| |||||||| || |||||||| Sbjct: 12315477 gatctccaccatcttgcgacggatctg 12315503 Score = 87.7 bits (44), Expect = 5e-14 Identities = 146/180 (81%) Strand = Plus / Plus Query: 498 atctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaag 557 ||||| ||||||||||||||||| || || ||||| || ||||| | |||||||||||| Sbjct: 12315619 atctggcttgcttgagcatagcatgtccgtttgacttgatttggcctcctcttggtgaag 12315678 Query: 558 ccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcctca 617 |||||| || | || |||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 12315679 ccaatgcagaagagacgcagcatgtagttatcagtggtctttacatccacatgagcctct 12315738 Query: 618 atgagggtctgccacttcctcacaagagacctgagcttgtcagtggtgaaatccatgccc 677 || || |||||||| ||| | || | || ||||||||||| || |||||| ||||||| Sbjct: 12315739 attagcgtctgccatttcttgaccaatgatctgagcttgtcggtcgtgaaactcatgccc 12315798 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatctt 733 ||||||||||||| || ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 12315869 cccagaagtttgtaagaacatttttcccctgcacatcctcggcacgtagtctgatctt 12315926
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 141 bits (71), Expect = 4e-30 Identities = 164/195 (84%) Strand = Plus / Minus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||| Sbjct: 5244278 cacctccatgagcttccccaggtcaaatttcggggcctttagaatcttcactttgcggac 5244219 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| || ||||| || || || || ||||||||||| ||||| ||||| || Sbjct: 5244218 aaacacattctgaagggggaaaatactggatgtcgccttctcaatttccttcccaataac 5244159 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||| |||||||| || ||||| ||||| |||||||||| ||| |||||| |||| Sbjct: 5244158 ttcaggaatgaactttgaaactagctctttcaaatcacagcttgaagcctggttggccat 5244099 Query: 467 gatctcaaccatctt 481 ||| ||||||||||| Sbjct: 5244098 gatttcaaccatctt 5244084 Score = 97.6 bits (49), Expect = 5e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 491 ctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctctt 550 ||||||||||||||| ||||||||||||||||| | ||| |||||||| || || | ||| Sbjct: 5243979 ctgtctgatctgactcgcttgagcatagcaagtcctcttcacctggttaggccgccgctt 5243920 Query: 551 ggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatg 610 ||||||||| || |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct: 5243919 ggtgaagccgatacagaacagacgcagcatgtagccgtctgtggttttgacatccacatg 5243860 Query: 611 agcctcaatgagggtctgccacttcctcacaagagacctgagctt 655 ||||||||| || |||||||||||| | ||||| || |||||||| Sbjct: 5243859 agcctcaatcagtgtctgccacttcttaacaagtgatctgagctt 5243815 Score = 73.8 bits (37), Expect = 7e-10 Identities = 57/64 (89%) Strand = Plus / Minus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 |||| ||||| ||||| || ||| |||||||||||||||||||||| ||||||||||| | Sbjct: 5243724 cccaaaagttggtgagcacgttcttcccttgcacatcctcagcacgaagtctgatcttcc 5243665 Query: 736 tgta 739 |||| Sbjct: 5243664 tgta 5243661
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 141 bits (71), Expect = 4e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||| || Sbjct: 12269667 cacctccataagcttgcccaggtcaaattttggggccttgaggatcttgactttgcgcac 12269726 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 12269727 aaacacattctgaagcgggaagatgcttgatgtggccttctcgatttccttcccaatcac 12269786 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 |||||| ||||| || ||| |||||||| | |||||| || || ||||| ||||| Sbjct: 12269787 ctcaggaatgaattttgacaccagctccttgagatcacaggatgatgcctggttcaccat 12269846 Query: 467 gatctcaaccatcttccggcggatctg 493 |||||| |||||||| || |||||||| Sbjct: 12269847 gatctccaccatcttgcgacggatctg 12269873 Score = 87.7 bits (44), Expect = 5e-14 Identities = 146/180 (81%) Strand = Plus / Plus Query: 498 atctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaag 557 ||||| ||||||||||||||||| || || ||||| || ||||| | |||||||||||| Sbjct: 12269989 atctggcttgcttgagcatagcatgtccgtttgacttgatttggcctcctcttggtgaag 12270048 Query: 558 ccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcctca 617 |||||| || | || |||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 12270049 ccaatgcagaagagacgcagcatgtagttatcagtggtctttacatccacatgagcctct 12270108 Query: 618 atgagggtctgccacttcctcacaagagacctgagcttgtcagtggtgaaatccatgccc 677 || || |||||||| ||| | || | || ||||||||||| || |||||| ||||||| Sbjct: 12270109 attagcgtctgccatttcttgaccaatgatctgagcttgtcggtcgtgaaactcatgccc 12270168 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatctt 733 ||||||||||||| || ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 12270239 cccagaagtttgtaagaacatttttcccctgcacatcctcggcacgtagtctgatctt 12270296
>emb|AL713942.4|CNS07YPB Oryza sativa chromosome 12, . BAC OSJNBa0009F05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 163702 Score = 141 bits (71), Expect = 4e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| ||||| ||||||||||| || |||||||| |||||||| || ||||| || Sbjct: 29662 cacctccataagcttgcccaggtcaaattttggggccttgaggatcttgactttgcgcac 29721 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 |||| ||||| ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 29722 aaacacattctgaagcgggaagatgcttgatgtggccttctcgatttccttcccaatcac 29781 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 |||||| ||||| || ||| |||||||| | |||||| || || ||||| ||||| Sbjct: 29782 ctcaggaatgaattttgacaccagctccttgagatcacaggatgatgcctggttcaccat 29841 Query: 467 gatctcaaccatcttccggcggatctg 493 |||||| |||||||| || |||||||| Sbjct: 29842 gatctccaccatcttgcgacggatctg 29868 Score = 87.7 bits (44), Expect = 5e-14 Identities = 146/180 (81%) Strand = Plus / Plus Query: 498 atctgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaag 557 ||||| ||||||||||||||||| || || ||||| || ||||| | |||||||||||| Sbjct: 29984 atctggcttgcttgagcatagcatgtccgtttgacttgatttggcctcctcttggtgaag 30043 Query: 558 ccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcctca 617 |||||| || | || |||||||| || ||||||||||| ||||| ||||||||||| Sbjct: 30044 ccaatgcagaagagacgcagcatgtagttatcagtggtctttacatccacatgagcctct 30103 Query: 618 atgagggtctgccacttcctcacaagagacctgagcttgtcagtggtgaaatccatgccc 677 || || |||||||| ||| | || | || ||||||||||| || |||||| ||||||| Sbjct: 30104 attagcgtctgccatttcttgaccaatgatctgagcttgtcggtcgtgaaactcatgccc 30163 Score = 60.0 bits (30), Expect = 1e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatctt 733 ||||||||||||| || ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 30234 cccagaagtttgtaagaacatttttcccctgcacatcctcggcacgtagtctgatctt 30291
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| | ||| || || ||||||||||| ||||||| ||||||||||||||||| Sbjct: 10823053 cacctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggat 10823112 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 | |||| || ||||| ||||| || ||||| || | |||||| |||||||||||||| || Sbjct: 10823113 gaacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgac 10823172 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||||||||| || || || || ||||||||||| ||| || |||||| |||| Sbjct: 10823173 ttcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccat 10823232 Query: 467 gatctcaaccatcttccggcggatct 492 |||||||||||||||||||||||||| Sbjct: 10823233 gatctcaaccatcttccggcggatct 10823258 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 525 cgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaa 584 ||||| ||||| |||||||| | ||||||||| |||||| ||||| |||||||||||| Sbjct: 10823399 cgcttcacctgatttgggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtag 10823458 Query: 585 ttgtcagtggtcttcacatcgacatgagcctcaat 619 || || |||||||| ||||| ||||| || ||||| Sbjct: 10823459 ttatctgtggtcttaacatccacatgggcttcaat 10823493 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 291 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||| Sbjct: 10822102 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 10822152 Score = 58.0 bits (29), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 ||||||| || |||||||||||| |||| || |||||||||||||| ||||| | ||| | Sbjct: 10823645 cccagaaattcgtgaggacattcctcccctgaacatcctcagcacgaagtctaaccttcc 10823704 Query: 736 tgta 739 |||| Sbjct: 10823705 tgta 10823708
>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1756_H07 Length = 217205 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| | ||| || || ||||||||||| ||||||| ||||||||||||||||| Sbjct: 29252 cacctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggat 29311 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 | |||| || ||||| ||||| || ||||| || | |||||| |||||||||||||| || Sbjct: 29312 gaacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgac 29371 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||||||||| || || || || ||||||||||| ||| || |||||| |||| Sbjct: 29372 ttcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccat 29431 Query: 467 gatctcaaccatcttccggcggatct 492 |||||||||||||||||||||||||| Sbjct: 29432 gatctcaaccatcttccggcggatct 29457 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 525 cgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaa 584 ||||| ||||| |||||||| | ||||||||| |||||| ||||| |||||||||||| Sbjct: 29598 cgcttcacctgatttgggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtag 29657 Query: 585 ttgtcagtggtcttcacatcgacatgagcctcaat 619 || || |||||||| ||||| ||||| || ||||| Sbjct: 29658 ttatctgtggtcttaacatccacatgggcttcaat 29692 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 291 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||| Sbjct: 28301 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 28351 Score = 58.0 bits (29), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 ||||||| || |||||||||||| |||| || |||||||||||||| ||||| | ||| | Sbjct: 29844 cccagaaattcgtgaggacattcctcccctgaacatcctcagcacgaagtctaaccttcc 29903 Query: 736 tgta 739 |||| Sbjct: 29904 tgta 29907
>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_D03 Length = 169378 Score = 139 bits (70), Expect = 1e-29 Identities = 172/206 (83%) Strand = Plus / Plus Query: 287 cacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggac 346 ||||||||| | ||| || || ||||||||||| ||||||| ||||||||||||||||| Sbjct: 162534 cacctccatcaacttcccaagatcaaacttcggtgccttcaagatcttcaccttgcggat 162593 Query: 347 gtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcac 406 | |||| || ||||| ||||| || ||||| || | |||||| |||||||||||||| || Sbjct: 162594 gaacacattttggagagggaatatacttgaagttgacttctcgatctcctttccaatgac 162653 Query: 407 ctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagcttggttgaccat 466 ||||||||||| || || || || ||||||||||| ||| || |||||| |||| Sbjct: 162654 ttcagggatgaattttgaaaccagttctttcaagtcacatgttgatgcctggttggccat 162713 Query: 467 gatctcaaccatcttccggcggatct 492 |||||||||||||||||||||||||| Sbjct: 162714 gatctcaaccatcttccggcggatct 162739 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Plus Query: 525 cgcttgacctggtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaa 584 ||||| ||||| |||||||| | ||||||||| |||||| ||||| |||||||||||| Sbjct: 162880 cgcttcacctgatttgggcggcgcttggtgaaaccaatgcaaaacaggcggagcatgtag 162939 Query: 585 ttgtcagtggtcttcacatcgacatgagcctcaat 619 || || |||||||| ||||| ||||| || ||||| Sbjct: 162940 ttatctgtggtcttaacatccacatgggcttcaat 162974 Score = 61.9 bits (31), Expect = 3e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacct 291 |||||||||| ||||||| ||| ||||| ||||||||||||||||| |||| Sbjct: 161583 caggcctgtccagcttcataccgacatcttccttgtagtcaccgtgtacct 161633 Score = 58.0 bits (29), Expect = 4e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 676 cccagaagtttgtgaggacattcatcccttgcacatcctcagcacggagtctgatcttnc 735 ||||||| || |||||||||||| |||| || |||||||||||||| ||||| | ||| | Sbjct: 163126 cccagaaattcgtgaggacattcctcccctgaacatcctcagcacgaagtctaaccttcc 163185 Query: 736 tgta 739 |||| Sbjct: 163186 tgta 163189
>gb|DQ445133.1| Striga asiatica isolate St513 S phase protein mRNA, partial cds Length = 571 Score = 123 bits (62), Expect = 9e-25 Identities = 101/114 (88%) Strand = Plus / Minus Query: 585 ttgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaaga 644 ||||| || ||||| ||||| |||||||||||||| || | |||||| |||||||| ||| Sbjct: 236 ttgtcggtagtcttgacatcaacatgagcctcaattagtgactgccatttcctcacgaga 177 Query: 645 gacctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggacattc 698 || || |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 176 gatctcagcttgtcggtggtgaaatccatgccccagaagtttgtgagaacattc 123
>gb|DQ164221.1| Nicotiana tabacum cyc07 mRNA, complete cds Length = 786 Score = 121 bits (61), Expect = 3e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 600 acatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagcttgtca 659 ||||| |||||||||||||| | |||||||||||| | || |||||||| | |||||| Sbjct: 380 acatccacatgagcctcaatcaatgtctgccacttctttaccagagacctcaacttgtct 321 Query: 660 gtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 || ||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct: 320 gttgtgaaatccattccccagaagtttgtgaggacattcttcccttgcacatc 268 Score = 69.9 bits (35), Expect = 1e-08 Identities = 179/227 (78%) Strand = Plus / Minus Query: 276 tagtcaccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttc 335 |||||||| || |||||||| ||||| || | ||||| || |||||||| ||||||||| Sbjct: 704 tagtcaccatgaacctccatcagcttgccaatatcaaattttggggccttgaggatcttc 645 Query: 336 accttgcggacgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcc 395 || ||||| | || || || || || |||||||||||||| || || ||||||||||| Sbjct: 644 actttgcgaatataaacattttgcagtgggaagatgcttgaagtcgctttctcaatctct 585 Query: 396 tttccaatcacctcagggatgaacttgttcacaagctccttcaagtcacagcttgcagct 455 | ||||| |||||||||||| || || | |||||||||||||||| ||| Sbjct: 584 ctaccaattgactcagggatgaattttgcgaccaactccttcaagtcacaggaacttgct 525 Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctg 502 ||||| ||||||||||||||| ||||| |||||||| | |||||| Sbjct: 524 tggtttctcatgatctcaaccattttccgacggatctgacggatctg 478
>gb|AY849388.1| Vitis vinifera cultivar Riesling cyc07 mRNA, partial cds Length = 879 Score = 121 bits (61), Expect = 3e-24 Identities = 126/148 (85%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| |||||||||||||| | ||||||||||| | ||| | |||||| ||| Sbjct: 320 gtcttaacatccacatgagcctcaatcaatgtctgccacttgcgcaccaaagacctcagc 261 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatcc 713 ||||| || || || ||||| |||||||||||||||||||||||| | |||||||||||| Sbjct: 260 ttgtctgttgtaaagtccattccccagaagtttgtgaggacattctttccttgcacatcc 201 Query: 714 tcagcacggagtctgatcttnctgtagg 741 ||||| | |||| |||||| ||||||| Sbjct: 200 tcagctctcagtcggatcttcctgtagg 173 Score = 71.9 bits (36), Expect = 3e-09 Identities = 135/168 (80%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || ||||||||| || |||||||| | |||||| || ||||| Sbjct: 654 cttcacaccaacatcttcagagtagtcaccatgaacctccatcaactttccaagatcaaa 595 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || || || |||| |||||| || || || | | | || ||||| || || ||||||| Sbjct: 594 tttgggagctttcaagatcttgacttttcgaatgaagacattctgtagaggatagatgct 535 Query: 374 tgaggtggccttctcaatctcctttccaatcacctcagggatgaactt 421 ||| || |||||||||||||| | ||||||| ||||||||||||||| Sbjct: 534 tgaagttgccttctcaatctctctgccaatcatctcagggatgaactt 487
>gb|AY643842.1|AY643842S1 Hordeum vulgare subsp. vulgare clone BAC 519K7 hardness locus region Length = 12998 Score = 113 bits (57), Expect = 8e-22 Identities = 81/89 (91%) Strand = Plus / Minus Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 ||||| |||||||||||||| ||| |||||||||||||||||| |||||||| ||||| | Sbjct: 3489 ggcgtttcttggtgaagccagtgggaaacatgcggagcatgtagttgtcagttgtcttga 3430 Query: 601 catcgacatgagcctcaatgagggtctgc 629 |||| ||||||||||||||||||||||| Sbjct: 3429 catctgcatgagcctcaatgagggtctgc 3401
>gb|DQ159867.1| Cymbidium faberi clone CDD-470 40s ribosomal protein S3 mRNA, partial cds Length = 462 Score = 113 bits (57), Expect = 8e-22 Identities = 132/157 (84%) Strand = Plus / Minus Query: 241 caggcctgtcaagcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagct 300 |||||||||||||||||||||||| ||| |||||||| || || || ||||||||||| | Sbjct: 169 caggcctgtcaagcttcacaccaaaatcttccttgtaatctccatgaacctccatgagtt 110 Query: 301 ttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgga 360 |||| || |||||||| || ||||| |||||||| |||||||||| | | || ||||| | Sbjct: 109 ttccaagatcaaactttggagccttgaggatcttaaccttgcggatgaatacattctgca 50 Query: 361 gcgggaagatgcttgaggtggccttctcaatctcctt 397 | ||| ||||||| | || |||||||| |||||||| Sbjct: 49 gggggtagatgctcgttgtcgccttctcgatctcctt 13
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 111 bits (56), Expect = 3e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 541 ggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttca 600 ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct: 128443 ggcgtttctttgtgaagccaatggcaaacatgcgaagcatgtaattgtcagttgtcttga 128502 Query: 601 catcgacatgagcctcaatgagggtctg 628 |||| ||||||||||| |||||||||| Sbjct: 128503 catctgcatgagcctcactgagggtctg 128530 Score = 71.9 bits (36), Expect = 3e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 ||||||||||||||| ||||| ||||| |||||||||||||||||| ||||| Sbjct: 128651 catgtaattgtcagttgtcttgacatctacatgagcctcaatgaggttctgc 128702 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 ||||||||||||||| ||||| ||||| |||||||| |||||| |||||||| Sbjct: 128763 catgtaattgtcagttgtcttgacatctacatgagcttcaatgtgggtctgc 128814 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 ||||||||||||||| ||||| ||||| ||||||| |||||||||| ||||| Sbjct: 128707 catgtaattgtcagttgtcttgacatctacatgagtctcaatgaggttctgc 128758
>ref|NM_119633.2| Arabidopsis thaliana structural constituent of ribosome AT4G34670 mRNA, complete cds Length = 1093 Score = 109 bits (55), Expect = 1e-20 Identities = 170/206 (82%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||| | |||||||||||||||||| || |||| || || ||||||||||||||| Sbjct: 818 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 759 Query: 300 tttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgg 359 ||||| ||||||||||| || ||||| ||||||||||| || |||| | |||| ||||| Sbjct: 758 tttccaaggtcaaacttgggagcctttaggatcttcactttacggatgaacacattctgc 699 Query: 360 agcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaac 419 | |||| |||||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct: 698 aacgggtagatgccctgtgttgccttctcaatctctcttccaatggcctctgggatgaac 639 Query: 420 ttgttcacaagctccttcaagtcaca 445 ||| ||| |||||||| | |||||| Sbjct: 638 ttggccactagctccttgaggtcaca 613 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 467 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 408 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 407 agcttgtcggttgtgaaatccataccccagaa 376
>gb|AY062500.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein (At4g34670; T4L20.250) mRNA, complete cds Length = 1094 Score = 109 bits (55), Expect = 1e-20 Identities = 170/206 (82%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||| | |||||||||||||||||| || |||| || || ||||||||||||||| Sbjct: 818 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 759 Query: 300 tttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgg 359 ||||| ||||||||||| || ||||| ||||||||||| || |||| | |||| ||||| Sbjct: 758 tttccaaggtcaaacttgggagcctttaggatcttcactttacggatgaacacattctgc 699 Query: 360 agcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaac 419 | |||| |||||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct: 698 aacgggtagatgccctgtgttgccttctcaatctctcttccaatggcctctgggatgaac 639 Query: 420 ttgttcacaagctccttcaagtcaca 445 ||| ||| |||||||| | |||||| Sbjct: 638 ttggccactagctccttgaggtcaca 613 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 467 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 408 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 407 agcttgtcggttgtgaaatccataccccagaa 376
>emb|BX826401.1|CNS0A38P Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB21ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 836 Score = 109 bits (55), Expect = 1e-20 Identities = 170/206 (82%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||| | |||||||||||||||||| || |||| || || ||||||||||||||| Sbjct: 647 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 588 Query: 300 tttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgg 359 ||||| ||||||||||| || ||||| ||||||||||| || |||| | |||| ||||| Sbjct: 587 tttccaaggtcaaacttgggagcctttaggatcttcactttacggatgaacacattctgc 528 Query: 360 agcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaac 419 | |||| |||||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct: 527 aacgggtagatgccctgtgttgccttctcaatctctcttccaatggcctctgggatgaac 468 Query: 420 ttgttcacaagctccttcaagtcaca 445 ||| ||| |||||||| | |||||| Sbjct: 467 ttggccactagctccttgaggtcaca 442 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 296 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 237 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 236 agcttgtcggttgtgaaatccataccccagaa 205
>emb|AJ001342.1|ATCYC07 Arabidopsis thaliana mRNA for S-phase-specific ribosomal protein Length = 906 Score = 109 bits (55), Expect = 1e-20 Identities = 170/206 (82%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||| | |||||||||||||||||| || |||| || || ||||||||||||||| Sbjct: 740 ggcctgtctaccttcacaccaacatcctctgctgtgtaatctccatgcacctccatgagc 681 Query: 300 tttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgg 359 ||||| ||||||||||| || ||||| ||||||||||| || |||| | |||| ||||| Sbjct: 680 tttccaaggtcaaacttgggagcctttaggatcttcactttacggatgaacacattctgc 621 Query: 360 agcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaac 419 | |||| |||||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct: 620 aacgggtagatgccctgtgttgccttctcaatctctcttccaatggcctctgggatgaac 561 Query: 420 ttgttcacaagctccttcaagtcaca 445 ||| ||| |||||||| | |||||| Sbjct: 560 ttggccactagctccttgaggtcaca 535 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 389 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 330 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 329 agcttgtcggttgtgaaatccataccccagaa 298
>dbj|AB029635.1| Daucus carota mRNA for cyc07, complete cds Length = 1050 Score = 105 bits (53), Expect = 2e-19 Identities = 197/245 (80%) Strand = Plus / Minus Query: 471 tcaaccatcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttg 530 ||||||||||| ||||| ||||| | |||||| || | ||| |||||||| || | ||| Sbjct: 530 tcaaccatcttacggcgaatctgccggatctggctagattgggcatagcaggttctcttc 471 Query: 531 acctggtttgggcgtctcttggtgaagccaatggcaaacatgcggagcatgtaattgtca 590 ||| |||| ||| ||||||| || |||||| |||||| || || | ||| | ||| Sbjct: 470 tgctgatttgcacgtttcttggtaaatccaatgcaaaacattcgcagagtataactatca 411 Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 || ||||||||||| |||||||| ||||| || ||||||||||| | || |||||||| Sbjct: 410 gttgtcttcacatctacatgagcttcaatcagtgtctgccacttgcgtaccagagacctc 351 Query: 651 agcttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcaca 710 | ||||||||| ||||| ||||| || |||||||||| || |||||| ||||||||||| Sbjct: 350 aacttgtcagttgtgaagtccattccatagaagtttgtaagcacattcttcccttgcaca 291 Query: 711 tcctc 715 ||||| Sbjct: 290 tcctc 286 Score = 54.0 bits (27), Expect = 7e-04 Identities = 114/143 (79%) Strand = Plus / Minus Query: 252 agcttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtca 311 |||||||||||||||||||| ||||||||| || |||||||| | || || | ||| Sbjct: 749 agcttcacaccaacatcctcagagtagtcaccatgaacctccatcaatttgccaatatca 690 Query: 312 aacttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatg 371 || || || || ||||||||||| || ||||||| | || || ||||| ||||||||| Sbjct: 689 aatttaggtgctttcaggatcttgactttgcggataaagacattttggagagggaagatg 630 Query: 372 cttgaggtggccttctcaatctc 394 || || || || ||||||||||| Sbjct: 629 ctcgaagttgctttctcaatctc 607
>emb|BX828268.1|CNS0A2YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZD12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1008 Score = 101 bits (51), Expect = 3e-18 Identities = 169/206 (82%), Gaps = 3/206 (1%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||| | |||||||||||||||||| || | || || || ||||||||||||||| Sbjct: 803 ggcctgtctaccttcacaccaacatcctctgctgtctaatctccatgcacctccatgagc 744 Query: 300 tttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacgtacacgttctgg 359 ||||| ||||||||||| || ||||| ||||||||||| || |||| | |||| ||||| Sbjct: 743 tttccaaggtcaaacttgggagcctttaggatcttcactttacggatgaacacattctgc 684 Query: 360 agcgggaagatgcttgaggtggccttctcaatctcctttccaatcacctcagggatgaac 419 | |||| |||||| || |||||||||||||| ||||||| |||| ||||||||| Sbjct: 683 aacgggtagatgccctgtgttgccttctcaatctctcttccaatggcctctgggatgaac 624 Query: 420 ttgttcacaagctccttcaagtcaca 445 ||| ||| |||||||| | |||||| Sbjct: 623 ttggccactagctccttgaggtcaca 598 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 452 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 393 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 392 agcttgtcggttgtgaaatccataccccagaa 361
>gb|AF093109.1| Tortula ruralis ribosomal protein S3 (rps3) mRNA, complete cds Length = 899 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 588 tcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagac 647 |||||||||||||||||||| ||||||| || | |||||||||| | ||| |||||| Sbjct: 410 tcagtggtcttcacatcgacgtgagcctggatcaaactctgccacttgcgcaccagagac 351 Query: 648 ctgagcttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgc 707 | |||||||| |||||||| ||||||||||||||||| ||||| || ||| | || ||| Sbjct: 350 cgcagcttgtccgtggtgaagtccatgccccagaagttggtgagcacgttcttgccctgc 291 Query: 708 acatcctc 715 |||||||| Sbjct: 290 acatcctc 283 Score = 42.1 bits (21), Expect = 2.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 390 atctcctttccaatcacctcagggatgaacttg 422 ||||||||||| || ||||| |||||||||||| Sbjct: 602 atctcctttccgattacctctgggatgaacttg 570
>gb|DQ268835.1| Solanum tuberosum clone 115A11 cyc07-like protein mRNA, complete cds Length = 1020 Score = 93.7 bits (47), Expect = 8e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| |||||||||||||| | ||||||||||| | ||| |||||||| | | Sbjct: 429 gtcttgacatccacatgagcctcaatcaaagtctgccacttgcgcaccagagacctcaac 370 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 ||||| || ||||| ||||| || ||||||||||||||||||| ||||||||||||| Sbjct: 369 ttgtctgttgtgaagtccattccatggaagtttgtgaggacattcctcccttgcacatc 311 Score = 42.1 bits (21), Expect = 2.6 Identities = 111/141 (78%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || ||||| || ||||||||||| | ||| || || || || Sbjct: 769 cttcacaccaacatcttctgaatagtcgccatgcacctccatcaacttgccaagatcgaa 710 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || |||||||| |||||||| || ||||| | || || || ||||| || || ||||| Sbjct: 709 tttaggggccttgaggatcttgactttgcgaatataaacattttggagtggaaaaatgct 650 Query: 374 tgaggtggccttctcaatctc 394 ||| || || ||||||||||| Sbjct: 649 tgaagtagctttctcaatctc 629
>gb|DQ252490.1| Solanum tuberosum clone 059D09 cyc07-like mRNA, complete cds Length = 996 Score = 93.7 bits (47), Expect = 8e-16 Identities = 101/119 (84%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| |||||||||||||| | ||||||||||| | ||| |||||||| | | Sbjct: 407 gtcttgacatccacatgagcctcaatcaaagtctgccacttgcgcaccagagacctcaac 348 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 ||||| || ||||| ||||| || ||||||||||||||||||| ||||||||||||| Sbjct: 347 ttgtctgttgtgaagtccattccatggaagtttgtgaggacattcctcccttgcacatc 289 Score = 42.1 bits (21), Expect = 2.6 Identities = 111/141 (78%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || ||||| || ||||||||||| | ||| || || || || Sbjct: 747 cttcacaccaacatcttctgaatagtcgccatgcacctccatcaacttgccaagatcgaa 688 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || |||||||| |||||||| || ||||| | || || || ||||| || || ||||| Sbjct: 687 tttaggggccttgaggatcttgactttgcgaatataaacattttggagtggaaaaatgct 628 Query: 374 tgaggtggccttctcaatctc 394 ||| || || ||||||||||| Sbjct: 627 tgaagtagctttctcaatctc 607
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82 Length = 195165 Score = 91.7 bits (46), Expect = 3e-15 Identities = 130/158 (82%) Strand = Plus / Minus Query: 288 acctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacg 347 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| || |||| | Sbjct: 4807 acctccatgagctttccaaggtcaaacttgggagcctttaggatcttcactttacggatg 4748 Query: 348 tacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcacc 407 |||| ||||| | |||| |||||| || |||||||||||||| ||||||| || Sbjct: 4747 aacacattctgcaacgggtagatgccctgtgttgccttctcaatctctcttccaatggcc 4688 Query: 408 tcagggatgaacttgttcacaagctccttcaagtcaca 445 || |||||||||||| ||| |||||||| | |||||| Sbjct: 4687 tctgggatgaacttggccactagctccttgaggtcaca 4650 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 4412 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 4353 Query: 651 agcttgtcagtggtgaaatccat 673 |||||||| || ||||||||||| Sbjct: 4352 agcttgtcggttgtgaaatccat 4330 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc 271 |||||||| | |||||||||||||||||| Sbjct: 4951 ggcctgtctaccttcacaccaacatcctc 4923
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81 Length = 195921 Score = 91.7 bits (46), Expect = 3e-15 Identities = 130/158 (82%) Strand = Plus / Minus Query: 288 acctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacg 347 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| || |||| | Sbjct: 195728 acctccatgagctttccaaggtcaaacttgggagcctttaggatcttcactttacggatg 195669 Query: 348 tacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcacc 407 |||| ||||| | |||| |||||| || |||||||||||||| ||||||| || Sbjct: 195668 aacacattctgcaacgggtagatgccctgtgttgccttctcaatctctcttccaatggcc 195609 Query: 408 tcagggatgaacttgttcacaagctccttcaagtcaca 445 || |||||||||||| ||| |||||||| | |||||| Sbjct: 195608 tctgggatgaacttggccactagctccttgaggtcaca 195571 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 195333 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 195274 Query: 651 agcttgtcagtggtgaaatccat 673 |||||||| || ||||||||||| Sbjct: 195273 agcttgtcggttgtgaaatccat 195251 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc 271 |||||||| | |||||||||||||||||| Sbjct: 195872 ggcctgtctaccttcacaccaacatcctc 195844
>emb|AL023094.2|ATT4L20 Arabidopsis thaliana DNA chromosome 4, BAC clone T4L20 (ESSA project) Length = 125502 Score = 91.7 bits (46), Expect = 3e-15 Identities = 130/158 (82%) Strand = Plus / Minus Query: 288 acctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcggacg 347 ||||||||||||||||| ||||||||||| || ||||| ||||||||||| || |||| | Sbjct: 86039 acctccatgagctttccaaggtcaaacttgggagcctttaggatcttcactttacggatg 85980 Query: 348 tacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatcacc 407 |||| ||||| | |||| |||||| || |||||||||||||| ||||||| || Sbjct: 85979 aacacattctgcaacgggtagatgccctgtgttgccttctcaatctctcttccaatggcc 85920 Query: 408 tcagggatgaacttgttcacaagctccttcaagtcaca 445 || |||||||||||| ||| |||||||| | |||||| Sbjct: 85919 tctgggatgaacttggccactagctccttgaggtcaca 85882 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 85644 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 85585 Query: 651 agcttgtcagtggtgaaatccat 673 |||||||| || ||||||||||| Sbjct: 85584 agcttgtcggttgtgaaatccat 85562 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc 271 |||||||| | |||||||||||||||||| Sbjct: 86183 ggcctgtctaccttcacaccaacatcctc 86155
>emb|Z18417.1|ATTS0792 Arabidopsis thaliana transcribed sequence; clone GBGa463, 5' end; similar to Cyc07 protein, S-phase specific - Madagascar Length = 187 Score = 83.8 bits (42), Expect = 8e-13 Identities = 114/138 (82%) Strand = Plus / Minus Query: 285 tgcacctccatgagctttcccaggtcaaacttcggggccttcaggatcttcaccttgcgg 344 |||||||||||||||||||| ||||||||||| || |||| ||||||||||| || ||| Sbjct: 158 tgcacctccatgagctttccaaggtcaaacttgggatcctttaggatcttcactttacgg 99 Query: 345 acgtacacgttctggagcgggaagatgcttgaggtggccttctcaatctcctttccaatc 404 | | |||| ||||| | |||| |||||| || |||||||||||||| ||||||| Sbjct: 98 atgaacacattctgcaacgggtagatgccctgtgttgccttctcaatctctcttccaatg 39 Query: 405 acctcagggatgaacttg 422 |||| |||||||||||| Sbjct: 38 gcctctgggatgaacttg 21
>dbj|AB023436.1| Hordeum vulgare DNA, down stream region of HvNAS1 gene Length = 10603 Score = 83.8 bits (42), Expect = 8e-13 Identities = 67/74 (90%), Gaps = 1/74 (1%) Strand = Plus / Plus Query: 556 agccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcct 615 |||||||||||||||||| ||||||| |||||||||| ||||| ||||| ||||||||| Sbjct: 4884 agccaatggcaaacatgcagagcatg-aattgtcagttgtcttgacatctgcatgagcct 4942 Query: 616 caatgagggtctgc 629 || ||||||||||| Sbjct: 4943 cactgagggtctgc 4956 Score = 71.9 bits (36), Expect = 3e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 ||||||||||||||| ||||| ||||| |||||||||||||||||| ||||| Sbjct: 5076 catgtaattgtcagttgtcttgacatctacatgagcctcaatgaggttctgc 5127 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 578 catgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgc 629 |||||| |||||||| ||||| ||||| ||||||| |||||||||||||||| Sbjct: 5132 catgtatttgtcagttgtcttgacatctacatgaggctcaatgagggtctgc 5183
>gb|AC146852.15| Medicago truncatula clone mth2-58k21, complete sequence Length = 145314 Score = 81.8 bits (41), Expect = 3e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 501 tgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaagcca 560 ||||||| ||| ||||| ||||| | ||| |||||||||| ||| ||||||||||| ||| Sbjct: 48675 tgacttgattgggcataacaagtcctcttcacctggtttgagcgcctcttggtgaaccca 48616 Query: 561 atggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcctcaatg 620 ||| ||||| | | | || || ||||||||||| ||||| |||||||| |||||| Sbjct: 48615 atgcagaacattctcaaagtatagttatcagtggtcttaacatccacatgagcttcaatg 48556 Query: 621 agggtctgccacttcctcacaagagacctgagcttgtcagtggtgaaatccat 673 || ||||||||||| | ||| | ||||| |||||||| ||||| |||||||| Sbjct: 48555 agagtctgccacttacgcaccaatgacctaagcttgtcggtggtaaaatccat 48503 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Minus Query: 381 gccttctcaatctcctttccaatcacctcagggatgaacttg 422 |||||||||||||| |||||||||| ||||||||| |||||| Sbjct: 49172 gccttctcaatctcttttccaatcatctcagggataaacttg 49131
>gb|AC135320.6| Medicago truncatula clone mth2-28e9, complete sequence Length = 108644 Score = 81.8 bits (41), Expect = 3e-12 Identities = 140/173 (80%) Strand = Plus / Plus Query: 501 tgacttgcttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaagcca 560 ||||||| ||| ||||| ||||| | ||| |||||||||| ||| ||||||||||| ||| Sbjct: 42236 tgacttgattgggcataacaagtcctcttcacctggtttgagcgcctcttggtgaaccca 42295 Query: 561 atggcaaacatgcggagcatgtaattgtcagtggtcttcacatcgacatgagcctcaatg 620 ||| ||||| | | | || || ||||||||||| ||||| |||||||| |||||| Sbjct: 42296 atgcagaacattctcaaagtatagttatcagtggtcttaacatccacatgagcttcaatg 42355 Query: 621 agggtctgccacttcctcacaagagacctgagcttgtcagtggtgaaatccat 673 || ||||||||||| | ||| | ||||| |||||||| ||||| |||||||| Sbjct: 42356 agagtctgccacttacgcaccaatgacctaagcttgtcggtggtaaaatccat 42408 Score = 60.0 bits (30), Expect = 1e-05 Identities = 39/42 (92%) Strand = Plus / Plus Query: 381 gccttctcaatctcctttccaatcacctcagggatgaacttg 422 |||||||||||||| |||||||||| ||||||||| |||||| Sbjct: 41739 gccttctcaatctcttttccaatcatctcagggataaacttg 41780
>dbj|AB116637.1| Lentinula edodes Le. cyc07 mRNA for putative S-phase specific ribosomal protein cyc07, complete cds Length = 980 Score = 77.8 bits (39), Expect = 5e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 587 gtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagaga 646 |||||||||||||||||||||||| || |||||||| |||||||| |||| || ||||| Sbjct: 453 gtcagtggtcttcacatcgacatgggcttcaatgagagtctgccatttccgtacgagaga 394 Query: 647 cctgagcttgtcagtggtgaaatccat 673 | |||||||| | |||||||||||| Sbjct: 393 tcgcagcttgtcggaggtgaaatccat 367
>gb|BT000122.1| Arabidopsis thaliana Putative S-phase-specific ribosomal protein (At4g34670) mRNA, complete cds Length = 581 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctg 650 ||||| |||||||||||||| || ||||| | |||||||||||| |||| | ||||| Sbjct: 190 gtggttttcacatcgacatgggcttcaatcaaagtctgccacttcttcaccaatgacctt 249 Query: 651 agcttgtcagtggtgaaatccatgccccagaa 682 |||||||| || ||||||||||| |||||||| Sbjct: 250 agcttgtcggttgtgaaatccataccccagaa 281
>emb|Z25769.1|BRSPSG B.rapa mRNA for S phase specific gene Length = 1050 Score = 71.9 bits (36), Expect = 3e-09 Identities = 82/95 (86%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||||| |||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 848 ggcctgtcaaccttcacaccaacatcctctgctgtgtagtctccgtgaacctccataagc 789 Query: 300 tttcccaggtcaaacttcggggccttcaggatctt 334 |||| ||||| ||||| || ||||| |||||||| Sbjct: 788 tttctaaggtcgaacttgggagccttgaggatctt 754 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 |||| |||||||||||||| ||||| ||||||| ||| || | |||||||||||| | | Sbjct: 505 tgtagttgtcagtggtcttaacatcaacatgagactcgatcaaagtctgccacttcttaa 446 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | |||||||| ||||| || ||||| ||||| |||||||| Sbjct: 445 ccaaggacctgagtttgtcggttgtgaagtccataccccagaa 403
>gb|L23553.1|BRRSPSK Brassica rapa S-phase-specific (BIS289) mRNA, complete cds Length = 1050 Score = 71.9 bits (36), Expect = 3e-09 Identities = 82/95 (86%), Gaps = 3/95 (3%) Strand = Plus / Minus Query: 243 ggcctgtcaagcttcacaccaacatcctc--ct-tgtagtcaccgtgcacctccatgagc 299 |||||||||| |||||||||||||||||| || ||||||| ||||| |||||||| ||| Sbjct: 848 ggcctgtcaaccttcacaccaacatcctctgctgtgtagtctccgtgaacctccataagc 789 Query: 300 tttcccaggtcaaacttcggggccttcaggatctt 334 |||| ||||| ||||| || ||||| |||||||| Sbjct: 788 tttctaaggtcgaacttgggagccttgaggatctt 754 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 |||| |||||||||||||| ||||| ||||||| ||| || | |||||||||||| | | Sbjct: 505 tgtagttgtcagtggtcttaacatcaacatgagactcgatcaaagtctgccacttcttaa 446 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | |||||||| ||||| || ||||| ||||| |||||||| Sbjct: 445 ccaaggacctgagtttgtcggttgtgaagtccataccccagaa 403
>dbj|D01058.1|CTRCYC07 Catharanthus roseus cyc07 mRNA, complete cds Length = 1100 Score = 71.9 bits (36), Expect = 3e-09 Identities = 84/100 (84%) Strand = Plus / Minus Query: 586 tgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagag 645 ||||||| ||||| ||||| |||||||| || || | || ||||||||||||||||||| Sbjct: 465 tgtcagttgtcttaacatcaacatgagcttctatcaaggattgccacttcctcacaagag 406 Query: 646 acctgagcttgtcagtggtgaaatccatgccccagaagtt 685 |||| | ||| || || ||||| ||||| ||||||||||| Sbjct: 405 acctcaacttatctgtagtgaagtccataccccagaagtt 366 Score = 44.1 bits (22), Expect = 0.65 Identities = 52/62 (83%) Strand = Plus / Minus Query: 456 tggttgaccatgatctcaaccatcttccggcggatctgtctgatctgacttgcttgagca 515 ||||||||||||||||| ||||||||| || ||||| | ||| ||||||| ||| ||| Sbjct: 595 tggttgaccatgatctcccgcatcttccgacgaatctggcggatttgacttgattgtgca 536 Query: 516 ta 517 || Sbjct: 535 ta 534
>gb|DQ241862.1| Solanum tuberosum clone 027B03 40S ribosomal protein S3a-like mRNA, complete cds Length = 1118 Score = 69.9 bits (35), Expect = 1e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || |||||||| || |||||||| ||||| || |||||||| Sbjct: 812 cttcacaccaacatcttctgaatagtcaccatgaacctccatcagcttgcctaggtcaaa 753 Query: 314 cttcggggccttcaggatcttcacctt 340 || ||||||||||||||||| ||||| Sbjct: 752 tttaggggccttcaggatcttgacctt 726 Score = 61.9 bits (31), Expect = 3e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| ||||| |||||||| | |||||||| || | || |||||||| | | Sbjct: 472 gtcttgacatcaacatgggcctcaatcaaagtctgccatttgcggaccagagacctcaac 413 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 || || || ||||||||||| || |||||||||||| |||||| ||||||||||||| Sbjct: 412 ttatctgttgtgaaatccattccatggaagtttgtgagaacattcctcccttgcacatc 354
>gb|DQ268842.1| Solanum tuberosum clone 135C12 40S ribosomal protein S3a-like protein mRNA, complete cds Length = 1059 Score = 65.9 bits (33), Expect = 2e-07 Identities = 114/141 (80%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || ||| |||||||| |||||||| | | | || ||||| || Sbjct: 757 cttcacaccaacatcttctgagtaatcaccgtgaacctccatcaacctcccaaggtcgaa 698 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || || ||||||| |||||| |||||||| | | |||| ||||| | ||| ||||||| Sbjct: 697 tttaggagccttcaagatcttgaccttgcgaatgaacacattctgcaaagggtagatgct 638 Query: 374 tgaggtggccttctcaatctc 394 ||| || |||||||||||||| Sbjct: 637 tgaagttgccttctcaatctc 617
>gb|DQ268856.1| Solanum tuberosum clone 174A02 cyc07-like protein mRNA, complete cds Length = 1045 Score = 63.9 bits (32), Expect = 7e-07 Identities = 188/240 (78%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || |||||||| || |||||||| ||||| || |||||||| Sbjct: 799 cttcacaccaacatcttctgaatagtcaccatgaacctccatcagcttgccaaggtcaaa 740 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || |||||||| |||||||| ||||| || | || || || || || ||||||||||| Sbjct: 739 tttaggggccttgaggatcttgacctttcgaatatagacattttgtagggggaagatgct 680 Query: 374 tgaggtggccttctcaatctcctttccaatcacctcagggatgaacttgttcacaagctc 433 || || || || ||||||||| | ||||| ||||||||||| || || | ||| Sbjct: 679 ggaagttgctttttcaatctccctgccaattgattcagggatgaattttgcaactaactc 620 Query: 434 cttcaagtcacagcttgcagcttggttgaccatgatctcaaccatcttccggcggatctg 493 ||||||||||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct: 619 cttcaagtcacaggaacttgcttggttcctcataatctcaaccatcttcctgcggatctg 560 Score = 46.1 bits (23), Expect = 0.16 Identities = 95/119 (79%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| ||||| |||||||| | |||||||| || | || |||||||| | | Sbjct: 459 gtctttacatcaacatgggcctcaatcaaagtctgccatttgcggaccagagacctcaac 400 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 || || || ||||||||||| || ||| |||||||| ||||| ||||||||||||| Sbjct: 399 ttatctgttgtgaaatccattccatggaaatttgtgagaacatttctcccttgcacatc 341
>gb|DQ268849.1| Solanum tuberosum clone 155F06 cyc07-like protein mRNA, complete cds Length = 1038 Score = 63.9 bits (32), Expect = 7e-07 Identities = 188/240 (78%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || |||||||| || |||||||| ||||| || |||||||| Sbjct: 783 cttcacaccaacatcttctgaatagtcaccatgaacctccatcagcttgccaaggtcaaa 724 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || |||||||| |||||||| ||||| || | || || || || || ||||||||||| Sbjct: 723 tttaggggccttgaggatcttgacctttcgaatatagacattttgtagggggaagatgct 664 Query: 374 tgaggtggccttctcaatctcctttccaatcacctcagggatgaacttgttcacaagctc 433 || || || || ||||||||| | ||||| ||||||||||| || || | ||| Sbjct: 663 ggaagttgctttttcaatctccctgccaattgattcagggatgaattttgcaactaactc 604 Query: 434 cttcaagtcacagcttgcagcttggttgaccatgatctcaaccatcttccggcggatctg 493 ||||||||||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct: 603 cttcaagtcacaggaacttgcttggttcctcataatctcaaccatcttcctgcggatctg 544 Score = 46.1 bits (23), Expect = 0.16 Identities = 95/119 (79%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| ||||| |||||||| | |||||||| || | || |||||||| | | Sbjct: 443 gtctttacatcaacatgggcctcaatcaaagtctgccatttgcggaccagagacctcaac 384 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 || || || ||||||||||| || ||| |||||||| ||||| ||||||||||||| Sbjct: 383 ttatctgttgtgaaatccattccatggaaatttgtgagaacatttctcccttgcacatc 325
>gb|DQ252485.1| Solanum tuberosum clone 048H05 cyc07-like mRNA, complete cds Length = 998 Score = 63.9 bits (32), Expect = 7e-07 Identities = 188/240 (78%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||||||||| || |||||||| || |||||||| ||||| || |||||||| Sbjct: 759 cttcacaccaacatcttctgaatagtcaccatgaacctccatcagcttgccaaggtcaaa 700 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || |||||||| |||||||| ||||| || | || || || || || ||||||||||| Sbjct: 699 tttaggggccttgaggatcttgacctttcgaatatagacattttgtagggggaagatgct 640 Query: 374 tgaggtggccttctcaatctcctttccaatcacctcagggatgaacttgttcacaagctc 433 || || || || ||||||||| | ||||| ||||||||||| || || | ||| Sbjct: 639 ggaagttgctttttcaatctccctgccaattgattcagggatgaattttgcaactaactc 580 Query: 434 cttcaagtcacagcttgcagcttggttgaccatgatctcaaccatcttccggcggatctg 493 ||||||||||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct: 579 cttcaagtcacaggaacttgcttggttcctcataatctcaaccatcttcctgcggatctg 520 Score = 46.1 bits (23), Expect = 0.16 Identities = 95/119 (79%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||| ||||| ||||| |||||||| | |||||||| || | || |||||||| | | Sbjct: 419 gtctttacatcaacatgggcctcaatcaaagtctgccatttgcggaccagagacctcaac 360 Query: 654 ttgtcagtggtgaaatccatgccccagaagtttgtgaggacattcatcccttgcacatc 712 || || || ||||||||||| || ||| |||||||| ||||| ||||||||||||| Sbjct: 359 ttatctgttgtgaaatccattccatggaaatttgtgagaacatttctcccttgcacatc 301
>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840 mRNA, complete cds Length = 1004 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 458 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 399 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 398 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 356 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 562 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 503 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 502 gttagcacgtctcttggtgaag 481 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 756 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 704
>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840) mRNA, complete cds Length = 870 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 400 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 341 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 340 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 298 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 504 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 445 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 444 gttagcacgtctcttggtgaag 423 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 698 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 646
>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840; T9J14.21) mRNA, complete cds Length = 1000 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 457 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 398 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 397 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 355 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 561 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 502 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 501 gttagcacgtctcttggtgaag 480 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 755 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 703
>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 170 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 111 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 110 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 68 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 274 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 215 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 214 gttagcacgtctcttggtgaag 193 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 468 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 416
>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 390 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 331 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 330 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 288 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 494 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 435 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 434 gttagcacgtctcttggtgaag 413 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 688 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 636
>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence Length = 1001 Score = 61.9 bits (31), Expect = 3e-06 Identities = 85/103 (82%) Strand = Plus / Minus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 458 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 399 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccccagaa 682 | | ||||| || || || |||||||| |||||||||||||| Sbjct: 398 ccaatgacctaagtttatcggtggtgaagtccatgccccagaa 356 Score = 60.0 bits (30), Expect = 1e-05 Identities = 69/82 (84%) Strand = Plus / Minus Query: 476 catcttccggcggatctgtctgatctgacttgcttgagcatagcaagtgcgcttgacctg 535 |||||||| ||||||||| | ||| || || | |||||| |||||||| | ||||||||| Sbjct: 562 catcttcctgcggatctgacggatttggctggattgagcgtagcaagtcctcttgacctg 503 Query: 536 gtttgggcgtctcttggtgaag 557 ||| | ||||||||||||||| Sbjct: 502 gttagcacgtctcttggtgaag 481 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 756 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 704
>gb|BT012853.1| Lycopersicon esculentum clone 113933F, mRNA sequence Length = 1053 Score = 58.0 bits (29), Expect = 4e-05 Identities = 113/141 (80%) Strand = Plus / Minus Query: 254 cttcacaccaacatcctccttgtagtcaccgtgcacctccatgagctttcccaggtcaaa 313 ||||||||| ||||| || ||| |||||||| |||||||| | | | || |||||||| Sbjct: 797 cttcacaccgacatcttctgagtaatcaccgtgaacctccatcaacctcccaaggtcaaa 738 Query: 314 cttcggggccttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgct 373 || || ||||||| |||||| |||||||| | | | || ||||| | ||| ||||||| Sbjct: 737 tttaggagccttcaagatcttgaccttgcgaatgaatacattctgcaaagggtagatgct 678 Query: 374 tgaggtggccttctcaatctc 394 ||| || |||||||||||||| Sbjct: 677 tgaagttgccttctcaatctc 657
>gb|AY857460.1| Suberites domuncula S3a mRNA, complete cds Length = 759 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 588 tcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagac 647 ||||| |||||||||||||||| |||||||| || |||||||| ||| | ||||| | | Sbjct: 389 tcagttgtcttcacatcgacattggcctcaatcagagtctgccatttctttacaagtgcc 330 Query: 648 ctgagcttgtcagtggt 664 ||||| ||||| ||||| Sbjct: 329 ctgagtttgtctgtggt 313
>dbj|D26058.1|CTRCYC07A Catharanthus roseus cyc07 gene, exon1-7, complete cds Length = 4798 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 586 tgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagag 645 ||||||| ||||| ||||| |||||||| || || | || ||||||||||||||||||| Sbjct: 3521 tgtcagttgtcttaacatcaacatgagcttctatcaaggattgccacttcctcacaagag 3462 Query: 646 acct 649 |||| Sbjct: 3461 acct 3458
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Plus Query: 580 tgtaattgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctca 639 ||||| |||| ||||| || ||||| |||||||||||||| | |||||||||||| | | Sbjct: 74218 tgtaactgtcggtggttttaacatcaacatgagcctcaatcaaagtctgccacttcttaa 74277 Query: 640 caagagacctgagcttgtcagtggtgaaatccatgccc 677 | | ||||| || || || |||||||| ||||||||| Sbjct: 74278 ccaatgacctaagtttatcggtggtgaagtccatgccc 74315 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Plus Query: 509 ttgagcatagcaagtgcgcttgacctggtttgggcgtctcttggtgaag 557 |||||| |||||||| | |||||||||||| | ||||||||||||||| Sbjct: 74147 ttgagcgtagcaagtcctcttgacctggttagcacgtctcttggtgaag 74195
>emb|X68555.1|ACKRPA A.californica KRP-A gene Length = 849 Score = 52.0 bits (26), Expect = 0.003 Identities = 56/66 (84%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaagagacctgagc 653 ||||||||||| |||| |||||||| || |||||||||||| |||| | ||| | |||| Sbjct: 395 gtcttcacatcaacattggcctcaataagagtctgccacttcttcaccatagagcagagc 336 Query: 654 ttgtca 659 |||||| Sbjct: 335 ttgtca 330
>gb|L31645.1|HNNSPSP Helianthus annuus ribosomal protein S3a mRNA, complete cds Length = 982 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 585 ttgtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttcctcacaaga 644 ||||| || ||||| ||||||||||| || || || | | |||||| ||| ||||||| Sbjct: 464 ttgtcggttgtcttaacatcgacatgtgcttcgatcaaagactgccatttcttcacaagc 405 Query: 645 gacctgagcttgtcagtggtgaaatccatgccccagaa 682 ||||||||||| || ||||| | |||||| |||||||| Sbjct: 404 gacctgagcttatctgtggtaacatccataccccagaa 367
>ref|XM_370422.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06919.4) partial mRNA Length = 771 Score = 50.1 bits (25), Expect = 0.011 Identities = 63/73 (86%), Gaps = 2/73 (2%) Strand = Plus / Minus Query: 323 cttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgc-ttgaggtgg 381 |||||| | ||| |||||||||| || ||||||||| || ||| |||||| ||||| ||| Sbjct: 657 cttcagcagcttaaccttgcggatgtgcacgttctgcagggggtagatgccttgag-tgg 599 Query: 382 ccttctcaatctc 394 ||||||||||||| Sbjct: 598 ccttctcaatctc 586
>gb|BC058483.1| Rattus norvegicus ribosomal protein S3a, mRNA (cDNA clone MGC:72868 IMAGE:6887884), complete cds Length = 896 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccactt 634 ||||||||||| |||||||| ||||| | |||||||||||| Sbjct: 415 gtcttcacatcaacatgagcttcaatcatggtctgccactt 375
>ref|NM_017153.1| Rattus norvegicus ribosomal protein S3a (Rps3a), mRNA Length = 880 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccactt 634 ||||||||||| |||||||| ||||| | |||||||||||| Sbjct: 410 gtcttcacatcaacatgagcttcaatcatggtctgccactt 370
>gb|AY151152.1| Ilyanassa obsoleta 40S ribosomal protein-like protein mRNA, partial cds Length = 489 Score = 50.1 bits (25), Expect = 0.011 Identities = 40/45 (88%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 ||||||||||| || ||||| ||||| || ||||||||||||||| Sbjct: 80 gtggtcttcacgtccacatgggcctcgatcagggtctgccacttc 36
>gb|AY849647.1| Magnaporthe grisea 40S ribosomal protein S1-like protein mRNA, complete cds Length = 1110 Score = 50.1 bits (25), Expect = 0.011 Identities = 63/73 (86%), Gaps = 2/73 (2%) Strand = Plus / Minus Query: 323 cttcaggatcttcaccttgcggacgtacacgttctggagcgggaagatgc-ttgaggtgg 381 |||||| | ||| |||||||||| || ||||||||| || ||| |||||| ||||| ||| Sbjct: 751 cttcagcagcttaaccttgcggatgtgcacgttctgcagggggtagatgccttgag-tgg 693 Query: 382 ccttctcaatctc 394 ||||||||||||| Sbjct: 692 ccttctcaatctc 680
>emb|X75161.1|RNRNAS3A R.norvegicus (Sprague-Dawley) mRNA for ribosomal protein S3a Length = 880 Score = 50.1 bits (25), Expect = 0.011 Identities = 37/41 (90%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccactt 634 ||||||||||| |||||||| ||||| | |||||||||||| Sbjct: 410 gtcttcacatcaacatgagcttcaatcatggtctgccactt 370
>gb|DP000013.1| Otolemur garnettii target 1 genomic scaffold Length = 1743090 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 ||||||||| ||||||||||||||||| Sbjct: 1604959 ctccatgagttttcccaggtcaaactt 1604933
>gb|AC090771.4| Homo sapiens chromosome 18, clone RP11-795H16, complete sequence Length = 186031 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 90910 ctccatgagctttcccagttcaaactt 90884
>ref|XM_944491.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 10 (LOC400652), mRNA Length = 870 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 711 ctccatgagctttcccagttcaaactt 685
>ref|XM_944488.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 9 (LOC400652), mRNA Length = 861 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 711 ctccatgagctttcccagttcaaactt 685
>ref|XM_944486.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 8 (LOC400652), mRNA Length = 900 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 721 ctccatgagctttcccagttcaaactt 695
>ref|XM_940167.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 6 (LOC400652), mRNA Length = 734 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 560 ctccatgagctttcccagttcaaactt 534
>ref|XM_944482.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 7 (LOC400652), mRNA Length = 592 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 418 ctccatgagctttcccagttcaaactt 392
>ref|XM_931855.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 5 (LOC400652), mRNA Length = 871 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 721 ctccatgagctttcccagttcaaactt 695
>ref|XM_931846.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 4 (LOC400652), mRNA Length = 880 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 721 ctccatgagctttcccagttcaaactt 695
>ref|XM_931841.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 3 (LOC400652), mRNA Length = 900 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 721 ctccatgagctttcccagttcaaactt 695
>ref|XM_927103.1| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 2 (LOC400652), mRNA Length = 734 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 560 ctccatgagctttcccagttcaaactt 534
>ref|XM_375543.3| PREDICTED: Homo sapiens similar to 40S ribosomal protein S3a, transcript variant 1 (LOC400652), mRNA Length = 592 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 418 ctccatgagctttcccagttcaaactt 392
>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence Length = 188858 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 290 ctccatgagctttcccaggtcaaactt 316 |||||||||||||||||| |||||||| Sbjct: 183136 ctccatgagctttcccagttcaaactt 183162
>gb|AC146532.3| Otolemur garnettii clone CH256-151F13, complete sequence Length = 197659 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 290 ctccatgagctttcccaggtcaaactt 316 ||||||||| ||||||||||||||||| Sbjct: 59528 ctccatgagttttcccaggtcaaactt 59502
>ref|XM_855284.1| PREDICTED: Canis familiaris similar to ribosomal protein S3a, transcript variant 6 (LOC607824), mRNA Length = 844 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgcca 631 ||||||||||| |||||||| ||||| | ||||||||| Sbjct: 392 gtcttcacatcaacatgagcttcaatcatggtctgcca 355
>ref|XM_855250.1| PREDICTED: Canis familiaris similar to ribosomal protein S3a, transcript variant 5 (LOC607824), mRNA Length = 1060 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgcca 631 ||||||||||| |||||||| ||||| | ||||||||| Sbjct: 392 gtcttcacatcaacatgagcttcaatcatggtctgcca 355
>ref|XM_855221.1| PREDICTED: Canis familiaris similar to ribosomal protein S3a, transcript variant 4 (LOC607824), mRNA Length = 1042 Score = 44.1 bits (22), Expect = 0.65 Identities = 34/38 (89%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgcca 631 ||||||||||| |||||||| ||||| | ||||||||| Sbjct: 374 gtcttcacatcaacatgagcttcaatcatggtctgcca 337
>gb|AC114663.8| Mus musculus chromosome 1, clone RP24-172O22, complete sequence Length = 167652 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 629 ccacttcctcacaagagacctgagcttgt 657 |||||||||| ||||||||||| |||||| Sbjct: 146617 ccacttcctctcaagagacctgggcttgt 146589
>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence Length = 244130 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 629 ccacttcctcacaagagacctgagcttgt 657 |||||||||| ||||||||||| |||||| Sbjct: 238479 ccacttcctctcaagagacctgggcttgt 238451
>gb|AC163338.5| Mus musculus BAC clone RP24-574A13 from chromosome 13, complete sequence Length = 149507 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 tgcttgaggtggccttctcaa 390 ||||||||||||||||||||| Sbjct: 13112 tgcttgaggtggccttctcaa 13132
>ref|XM_534831.2| PREDICTED: Canis familiaris similar to ribosomal protein S3a, transcript variant 1 (LOC608748), mRNA Length = 886 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccactt 634 ||||| ||||| |||||||| ||||| | |||||||||||| Sbjct: 414 gtctttacatcaacatgagcttcaatcatggtctgccactt 374
>ref|XM_748992.1| Aspergillus fumigatus Af293 ribosomal protein S0.e.B, cytosolic (Afu5g05450) partial mRNA Length = 771 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 533 ctggtttgggcgtctcttggtgaag 557 |||||| |||||||||||||||||| Sbjct: 447 ctggttcgggcgtctcttggtgaag 423
>gb|BC047260.1| Xenopus laevis ribosomal protein S3a, mRNA (cDNA clone MGC:53968 IMAGE:5570910), complete cds Length = 867 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgcca 631 |||||||||||||| ||||| || ||||| | ||||||||| Sbjct: 400 gtggtcttcacatcaacatgggcttcaatcatggtctgcca 360
>gb|BT022161.1| Drosophila melanogaster IP01358 full insert cDNA Length = 3118 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 1211 gcagcagcaacctcctccgca 1231
>gb|AC164426.5| Mus musculus BAC clone RP24-320I19 from chromosome 13, complete sequence Length = 160268 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 tgcttgaggtggccttctcaa 390 ||||||||||||||||||||| Sbjct: 41257 tgcttgaggtggccttctcaa 41237
>ref|NM_001008074.1| Xenopus tropicalis rps3a protein (rps3a), mRNA Length = 922 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgcca 631 |||||||||||||| ||||| || ||||| | ||||||||| Sbjct: 396 gtggtcttcacatcaacatgtgcttcaatcatggtctgcca 356
>gb|BC080969.1| Xenopus tropicalis rps3a protein, mRNA (cDNA clone MGC:79742 IMAGE:6983416), complete cds Length = 922 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgcca 631 |||||||||||||| ||||| || ||||| | ||||||||| Sbjct: 396 gtggtcttcacatcaacatgtgcttcaatcatggtctgcca 356
>ref|NM_206456.1| Drosophila melanogaster rotund CG32466-RB, transcript variant B (rn), mRNA Length = 2444 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 1684 gcagcagcaacctcctccgca 1704
>ref|NM_141458.2| Drosophila melanogaster rotund CG32466-RA, transcript variant A (rn), mRNA Length = 3661 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 2901 gcagcagcaacctcctccgca 2921
>gb|AF395905.1|AF395905 Drosophila melanogaster rotund mRNA, complete cds Length = 3658 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 2898 gcagcagcaacctcctccgca 2918
>gb|AF395904.1|AF395904 Drosophila melanogaster roughened eye mRNA, complete cds Length = 2444 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 1684 gcagcagcaacctcctccgca 1704
>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like protein, complete cds, clone: RAFL22-32-J16 Length = 468 Score = 42.1 bits (21), Expect = 2.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 282 ccgtgcacctccatgagctttcccaggtcaaacttcggggccttcaggatctt 334 ||||| || ||||||||||| || ||||| || || |||||||| |||||||| Sbjct: 213 ccgtgaacatccatgagcttgccaaggtcgaatttaggggccttgaggatctt 161
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 867462 gcagcagcaacctcctccgca 867442
>gb|AC160763.3| Mus musculus BAC clone RP23-238A4 from chromosome 17, complete sequence Length = 215626 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 aagtactcaagaaatcagccatcaa 106 |||||||||||||| |||||||||| Sbjct: 3171 aagtactcaagaaaccagccatcaa 3195
>gb|DQ066297.1| Ixodes scapularis isolate is-all-378 40S ribosomal protein S3a mRNA, complete cds Length = 813 Score = 42.1 bits (21), Expect = 2.6 Identities = 72/89 (80%) Strand = Plus / Minus Query: 547 tcttggtgaagccaatggcaaacatgcggagcatgtaattgtcagtggtcttcacatcga 606 ||||||||||||| ||| ||||||||||||| ||| ||| || ||| ||||||||| Sbjct: 433 tcttggtgaagccgatgcagaacatgcggagcaggtagccgtccgttgtcctcacatcga 374 Query: 607 catgagcctcaatgagggtctgccacttc 635 | |||||||| || |||||||||||| Sbjct: 373 ccgtggcctcaatcagcgtctgccacttc 345
>gb|AF379639.1|AF379639 Heliothis virescens ribosomal protein S3a mRNA, partial cds Length = 794 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 648 ctgagcttgtcagtggtgaaatccatgcc 676 ||||||||||||||||||| |||||||| Sbjct: 299 ctgagcttgtcagtggtgaggtccatgcc 271
>ref|XM_392119.2| PREDICTED: Apis mellifera similar to Phosphatidylinositol 3-kinase regulatory alpha subunit (PI3-kinase p85-alpha subunit) (PtdIns-3-kinase p85-alpha) (PI3K) (LOC408577), mRNA Length = 4102 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 571 tgcggagcatgtaattgtcag 591 ||||||||||||||||||||| Sbjct: 280 tgcggagcatgtaattgtcag 260
>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR01C11, complete sequence Length = 176991 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 137461 gcagcagcaacctcctccgca 137441
>gb|AC154561.2| Mus musculus BAC clone RP23-400M17 from chromosome 17, complete sequence Length = 191047 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 82 aagtactcaagaaatcagccatcaa 106 |||||||||||||| |||||||||| Sbjct: 73532 aagtactcaagaaaccagccatcaa 73508
>gb|AF429977.1| Spodoptera frugiperda ribosomal protein S3A mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 648 ctgagcttgtcagtggtgaaatccatgcc 676 ||||||||||||||||||| |||||||| Sbjct: 365 ctgagcttgtcagtggtgaggtccatgcc 337
>gb|AF056328.1|AF056328 Oryzias latipes V-Fos transformation effector (fte-1) mRNA, complete cds Length = 873 Score = 42.1 bits (21), Expect = 2.6 Identities = 42/49 (85%) Strand = Plus / Minus Query: 587 gtcagtggtcttcacatcgacatgagcctcaatgagggtctgccacttc 635 ||||||||||||||| || || || || ||||| | ||||||||||||| Sbjct: 409 gtcagtggtcttcacgtccacgtgggcttcaatcatggtctgccacttc 361
>ref|NM_209036.1| Eremothecium gossypii ACR281Cp (ACR281C), mRNA Length = 3780 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 846 gcagcagcaacctcctccgca 866
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete sequence Length = 301379 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 gcagcagcaacctcctccgca 218 ||||||||||||||||||||| Sbjct: 188870 gcagcagcaacctcctccgca 188850
>emb|CR760859.2| Xenopus tropicalis finished cDNA, clone TTpA010n05 Length = 863 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 591 gtggtcttcacatcgacatgagcctcaatgagggtctgcca 631 |||||||||||||| ||||| || ||||| | ||||||||| Sbjct: 393 gtggtcttcacatcaacatgtgcttcaatcatggtctgcca 353
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 629 ccacttcctcacaagagacctgagcttgt 657 |||||||||| ||||||||||| |||||| Sbjct: 151996 ccacttcctctcaagagacctgggcttgt 152024
>gb|M84716.1|RATVFOSPR R.norvegicus putative v-fos transformation effector protein (Fte-1) mRNA, complete cds Length = 860 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 594 gtcttcacatcgacatgagcctcaatgagggtctgccactt 634 |||||||| || |||||||| ||||| | |||||||||||| Sbjct: 404 gtcttcacgtcaacatgagcttcaatcatggtctgccactt 364 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,610,246 Number of Sequences: 3902068 Number of extensions: 6610246 Number of successful extensions: 118840 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 118278 Number of HSP's gapped (non-prelim): 506 length of query: 741 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 718 effective length of database: 17,143,297,704 effective search space: 12308887751472 effective search space used: 12308887751472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
