ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AM039895.1| Hordeum vulgare mRNA for putative AdoMet synthase 3 (sam3 gene) Length = 1447 Score = 188 bits (95), Expect = 4e-45 Identities = 138/155 (89%), Gaps = 1/155 (0%) Strand = Plus / Minus Query: 39 tcaaatgatacaccatgttggaaaacttagcactgatnaccagacggcaagaccagngna 98 ||||||||||||||| || ||||||||||||||||| |||||||||||||||||| | | Sbjct: 1440 tcaaatgatacacca-gtaagaaaacttagcactgatcaccagacggcaagaccagtgta 1382 Query: 99 gcacgnngcancgatgtngnntgctgttcttacttgcnaggagcaaangaaccccgtctt 158 ||||| ||| |||||| | |||||||||||||| | ||||||||| |||||||| ||| Sbjct: 1381 gcacgtcgcagcgatgtcgaatgctgttcttacttcccaggagcaaaagaaccccgcctt 1322 Query: 159 gccnaacttgagaggcatctgaccaagaaaacccc 193 ||| ||||||||||||||||||||||||||||||| Sbjct: 1321 gccgaacttgagaggcatctgaccaagaaaacccc 1287
>emb|AM039893.1| Hordeum vulgare sam1 gene for putative AdoMet synthase 1 Length = 1515 Score = 159 bits (80), Expect = 4e-36 Identities = 159/188 (84%), Gaps = 2/188 (1%) Strand = Plus / Minus Query: 1 gcagtttcagagacacanaaagananagggaaaatgtntcaaatgatacaccatgttgga 60 ||||||||||||||||| ||||| | |||| |||| | ||||||||||||||| || || Sbjct: 1478 gcagtttcagagacacaaaaagaaaaaggggaaatatatcaaatgatacacca-gtaaga 1420 Query: 61 aaacttagcactgatnaccagacggcaagaccagngnagcacgnngcancgatgtngnnt 120 |||||||||||||| |||||||||||||||||| | |||||| ||| |||||| | | Sbjct: 1419 gaacttagcactgatcaccagacggcaagaccagtgtagcacgtcgcagcgatgttgaat 1360 Query: 121 gc-tgttcttacttgcnaggagcaaangaaccccgtcttgccnaacttgagaggcatctg 179 || | ||||||||| | ||||||||| | | |||| |||||| ||||||||||||||| | Sbjct: 1359 gcttcttcttacttccgaggagcaaaaggatcccgccttgccgaacttgagaggcatcag 1300 Query: 180 accaagaa 187 |||||||| Sbjct: 1299 accaagaa 1292
>dbj|D63835.1|BLYSAS Barley mRNA for S-adenosylmethionine synthetase, complete cds Length = 1353 Score = 67.9 bits (34), Expect = 1e-08 Identities = 55/63 (87%) Strand = Plus / Minus Query: 125 ttcttacttgcnaggagcaaangaaccccgtcttgccnaacttgagaggcatctgaccaa 184 ||||||||| | ||||||||| | | |||| |||||| ||||||||||||||| |||||| Sbjct: 1327 ttcttacttccgaggagcaaaaggatcccgccttgccgaacttgagaggcatcagaccaa 1268 Query: 185 gaa 187 ||| Sbjct: 1267 gaa 1265
>emb|AL022145.1|HS423N22 Human DNA sequence from clone RP3-423N22 on chromosome 1q24-25 Contains part of the ASTN gene for astrotactin, complete sequence Length = 135007 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 166 ttgagaggcatctgaccaagaaa 188 ||||||| ||||||||||||||| Sbjct: 6928 ttgagagtcatctgaccaagaaa 6906
>gb|AC080172.5| Homo sapiens chromosome 11, clone CTC-790M5, complete sequence Length = 152435 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 ccatgttggaaaacttagc 69 ||||||||||||||||||| Sbjct: 60238 ccatgttggaaaacttagc 60256
>gb|AC111047.10| Mus musculus chromosome 3, clone RP23-176H24, complete sequence Length = 205473 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 atacaccatgttggaaaac 64 ||||||||||||||||||| Sbjct: 153428 atacaccatgttggaaaac 153410
>dbj|AP002444.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-262A12, complete sequence Length = 174558 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 ccatgttggaaaacttagc 69 ||||||||||||||||||| Sbjct: 105839 ccatgttggaaaacttagc 105821
>emb|CT030194.5| Mouse DNA sequence from clone RP23-463F7 on chromosome 13, complete sequence Length = 195497 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 catgttggaaaacttagca 70 ||||||||||||||||||| Sbjct: 57726 catgttggaaaacttagca 57708 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,054,793 Number of Sequences: 3902068 Number of extensions: 1054793 Number of successful extensions: 42830 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42814 Number of HSP's gapped (non-prelim): 13 length of query: 193 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 171 effective length of database: 17,147,199,772 effective search space: 2932171161012 effective search space used: 2932171161012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
