ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo15 |
|---|---|
| Clone Library Name | barley_pub |
>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein| 2) (AtFBL2) (COI-1) (AtCOI1) Length = 592 Score = 173 bits (439), Expect = 3e-43 Identities = 83/143 (58%), Positives = 107/143 (74%), Gaps = 4/143 (2%) Frame = -1 Query: 614 GGLSDVGLNYIGQHSGTXHYMLLGNVGQTDDGLISFAAGCRNLLKLELRSCCFSERALAL 435 GGL+D+GL+YIGQ+S +MLLG VG++D+GL+ F+ GC NL KLE+R CCFSERA+A Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 Query: 434 AVLKMPSLRYVWVQGYRASQTGRDLMLMARPFWNIEFTP----PGTESAGRLMEDGEPCV 267 AV K+PSLRY+WVQGYRAS TG+DLM MARP+WNIE P P G + E + Sbjct: 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE-----M 562 Query: 266 DRQAQVLAYYSLSGRRSDCPQSV 198 + A +LAYYSL+G+R+DCP +V Sbjct: 563 EHPAHILAYYSLAGQRTDCPTTV 585
>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat| protein 1) Length = 594 Score = 53.9 bits (128), Expect = 4e-07 Identities = 37/136 (27%), Positives = 60/136 (44%) Frame = -1 Query: 614 GGLSDVGLNYIGQHSGTXHYMLLGNVGQTDDGLISFAAGCRNLLKLELRSCCFSERALAL 435 G L+D YIG ++ + + G +D G+ +GC +L KLE+R C F ++AL Sbjct: 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 Query: 434 AVLKMPSLRYVWVQGYRASQTGRDLMLMARPFWNIEFTPPGTESAGRLMEDGEPCVDRQA 255 K+ ++R +W+ S L+ P N+E R D P Sbjct: 501 NASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE------RGAPDSRPESCPVE 554 Query: 254 QVLAYYSLSGRRSDCP 207 +V Y +++G R D P Sbjct: 555 RVFIYRTVAGPRFDMP 570
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7| Length = 466 Score = 33.1 bits (74), Expect = 0.67 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 608 LSDVGLNYIGQHSGTXHYM-LLGNVGQTDDGLISFAAGCRNLLKLELRSC 462 +SD L +GQHS + L G D+G I A GCR L +L++ C Sbjct: 292 ISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDC 341
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 32.7 bits (73), Expect = 0.87 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = +2 Query: 236 SSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFERLCSPAPIRTSE 415 S +Q P YQ +PH P+ P S ++A Q R G ERL PA +RTSE Sbjct: 311 SRLQRPVHLYQS-SPHTPNFRPSSIRKDALLQTGPRL-------GHLERLGQPANLRTSE 362 Query: 416 KAFSVRR 436 ++ +R Sbjct: 363 RSPPTKR 369
>POLS_MOUSE (Q6PB75) DNA polymerase sigma (EC 2.7.7.7)| Length = 542 Score = 32.7 bits (73), Expect = 0.87 Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 21/138 (15%) Frame = +3 Query: 81 SIQYPHTNISLLPKKGP-GATPSQTCASFVYVQSRRIQRNNRLRAVRPPPTKGVV---CK 248 S+Q P T ++ LP P ++ Q AS + + NN+ R PPPT GV C+ Sbjct: 386 SLQAPTTLMASLPTALPMPSSKPQPAASRTLIMTT----NNQTRVTIPPPTLGVAPVPCR 441 Query: 249 YLSLPINTGLPIFHQPTRAL-----------------RAGRRKLNVPEGPCHEHEVAASL 377 + T L H T + KL++ H S Sbjct: 442 QAGVDGTTSLKAVHSVTSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHNHTQGGGYSS 501 Query: 378 RGSVALHPYVPQRRHFQY 431 GS A+ P V R H QY Sbjct: 502 VGSGAVRPPVGNRGHHQY 519
>UREE_ACTPL (O54422) Urease accessory protein ureE| Length = 187 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = -3 Query: 459 LQRAGFGPRRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRW 280 LQ AGFGP++ E R+ L++ S H+HG H HG DG W Sbjct: 135 LQAAGFGPQKAER-----RLSQALRANSAQGHGHSHG-----HSHSHDHHGYHHHGDGNW 184
>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29| (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9) Length = 223 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -1 Query: 530 TDDGLISFAAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYV 402 TD+GL++ A GC +L L L C S++ A A P L+++ Sbjct: 114 TDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHL 157
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)| Length = 3005 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +2 Query: 170 CTVTQDTEEQQTAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPC 313 C + + QQ + SP+SSH S +P+L Q + P RSPC Sbjct: 442 CKTCELLDIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPH---RSPC 486
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 30.0 bits (66), Expect = 5.7 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = +2 Query: 203 TAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFER 382 TA PT S +Q P +Q PH P P ++A Q R G ER Sbjct: 302 TASRPTGPP--SRLQRPVHLHQS-GPHTPDFRPSGIRKDAFLQTGPRL-------GHLER 351 Query: 383 LCSPAPIRTSEKAFSV-RRGPKP 448 L A +RTSE+ S RR P+P Sbjct: 352 LGQSADLRTSERTPSTKRRLPRP 374
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = -1 Query: 608 LSDVGLNYIGQHSGTXHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 462 L D L YIG H + L Q TD+GLI+ GC L L C Sbjct: 208 LEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGC 257
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = -1 Query: 608 LSDVGLNYIGQHSGTXHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 462 L D L YIG H + L Q TD+GLI+ GC L L C Sbjct: 208 LEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGC 257
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = -1 Query: 608 LSDVGLNYIGQHSGTXHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 462 L D L YIG H + L Q TD+GLI+ GC L L C Sbjct: 208 LEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGC 257
>DHE4_GIBFU (Q96VJ7) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 451 Score = 30.0 bits (66), Expect = 5.7 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -3 Query: 435 RRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRWGAL 271 R+ N + V G GL + RP A G L+ + Y +H RG+ +G+ AL Sbjct: 170 RKFANRWEGVLTGKGLSWGGSLIRPEATGYGLVYYVEYMLKHANRGTFEGKRVAL 224
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 611 GLSDVGLNYIGQHSGTXHYMLLGNVGQTDD-GLISFAAGCRNLLKLELRSC 462 G++D G+ Y+ ++ + +G D GL A C NL +L L+SC Sbjct: 388 GITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSC 438
>MTX1_MOUSE (P47802) Metaxin-1| Length = 317 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/38 (47%), Positives = 19/38 (50%) Frame = -2 Query: 406 TYGCRATEPLKLAATSCSWQGPSGTLSLRLPARRARVG 293 TY PLK+ TS WQ PSGT LPA R G Sbjct: 28 TYTRFTGAPLKIHKTSNPWQSPSGT----LPALRTSDG 61
>DRL29_ARATH (Q9SZA7) Probable disease resistance protein At4g33300| Length = 832 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = -1 Query: 494 RNLLKLELRSCCFSERALALAVLKMPSLRYV 402 + L K+++R CCFS+R + LK SLR+V Sbjct: 768 KKLEKIDMRECCFSDRPSSAVSLK--SLRHV 796 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,746,085 Number of Sequences: 219361 Number of extensions: 2278863 Number of successful extensions: 5450 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5445 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
