ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109490.1| Zea mays CL920_1 mRNA sequence Length = 2298 Score = 240 bits (121), Expect = 4e-60 Identities = 331/401 (82%) Strand = Plus / Minus Query: 157 ccagctttgtgtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtcc 216 ||||||| || ||| |||| |||||||||||||| |||||| || || || ||||||||| Sbjct: 2024 ccagcttagtctatttacactcacgcaggatacaaaggaaccacggattgtgggcagtcc 1965 Query: 217 gacctcctcccactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggc 276 |||| | || ||||||| ||||||||||| |||||| || ||||| ||||| ||| Sbjct: 1964 agcctcttaccggcgagggagtggtatgcaagtatctgagcgtgactatctacacaaggc 1905 Query: 277 tccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttc 336 ||||||||||||||||||| ||| || ||| | |||||| |||||||| |||||| Sbjct: 1904 tccccatcttccatcagccaacctccgttcttaggattgggaggtgtaaactctatgttc 1845 Query: 337 cagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgc 396 ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||| Sbjct: 1844 cagaagggccttgccatgagcatgaggtctcggccggtttgagacgctttgtagccctga 1785 Query: 397 acccatacgtacctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctg 456 ||||||||||||||||| |||||||| | |||| || ||||||| || ||||||||| Sbjct: 1784 acccatacgtacctcagggaaggcatatgtagtattgcaagggccagtgctcgctcgctg 1725 Query: 457 aagcagcagctccttaattcaagcttcagcaggttccggcacccagctgcaaaactgatt 516 |||||||| ||||| | ||||||||| ||||||| ||| || ||| || ||||| Sbjct: 1724 aagcagcaactcctgagttcaagctttcgcaggtttacgcaacccaatgcgaagctgatc 1665 Query: 517 aatccgtcatccgtttgcccaacgttacccagaagcatgta 557 ||||| ||||| |||| |||||| ||||| ||||||||||| Sbjct: 1664 aatccatcatcagtttccccaacattaccgagaagcatgta 1624
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 224 bits (113), Expect = 3e-55 Identities = 366/451 (81%) Strand = Plus / Minus Query: 167 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 226 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 37502 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 37443 Query: 227 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 286 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 37442 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 37383 Query: 287 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 346 | ||| ||| || |||| | | |||||| |||||||| |||||||||||||||| Sbjct: 37382 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 37323 Query: 347 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 406 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 37322 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 37263 Query: 407 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 466 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 37262 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 37203 Query: 467 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 526 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 37202 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 37143 Query: 527 ccgtttgcccaacgttacccagaagcatgtagtgnatagttccactgtgctgnccaatat 586 | |||| |||||| ||||||||||||||||| || ||| ||||||||| ||| ||||||| Sbjct: 37142 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 37083 Query: 587 agttaaggcccacatctgaaaggccccctgg 617 || |||||| ||||||||| |||||||| Sbjct: 37082 agccaaggcctgtatctgaaagtccccctgg 37052 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tcttcctaggattagataggagta 24 ||||||||||||||||||| |||| Sbjct: 37692 tcttcctaggattagatagtagta 37669
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 224 bits (113), Expect = 3e-55 Identities = 366/451 (81%) Strand = Plus / Minus Query: 167 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 226 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 21918288 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 21918229 Query: 227 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 286 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 21918228 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 21918169 Query: 287 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 346 | ||| ||| || |||| | | |||||| |||||||| |||||||||||||||| Sbjct: 21918168 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 21918109 Query: 347 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 406 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 21918108 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 21918049 Query: 407 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 466 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 21918048 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 21917989 Query: 467 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 526 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 21917988 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 21917929 Query: 527 ccgtttgcccaacgttacccagaagcatgtagtgnatagttccactgtgctgnccaatat 586 | |||| |||||| ||||||||||||||||| || ||| ||||||||| ||| ||||||| Sbjct: 21917928 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 21917869 Query: 587 agttaaggcccacatctgaaaggccccctgg 617 || |||||| ||||||||| |||||||| Sbjct: 21917868 agccaaggcctgtatctgaaagtccccctgg 21917838 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tcttcctaggattagataggagta 24 ||||||||||||||||||| |||| Sbjct: 21918478 tcttcctaggattagatagtagta 21918455
>dbj|AK101514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F05, full insert sequence Length = 2305 Score = 216 bits (109), Expect = 7e-53 Identities = 365/451 (80%) Strand = Plus / Minus Query: 167 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 226 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 2018 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 1959 Query: 227 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 286 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 1958 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 1899 Query: 287 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 346 | ||| ||| || |||| | | |||||| |||||||| |||||||||||| ||| Sbjct: 1898 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagcgcc 1839 Query: 347 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 406 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 1838 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 1779 Query: 407 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 466 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 1778 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 1719 Query: 467 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 526 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 1718 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 1659 Query: 527 ccgtttgcccaacgttacccagaagcatgtagtgnatagttccactgtgctgnccaatat 586 | |||| |||||| ||||||||||||||||| || ||| ||||||||| ||| ||||||| Sbjct: 1658 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 1599 Query: 587 agttaaggcccacatctgaaaggccccctgg 617 || |||||| ||||||||| |||||||| Sbjct: 1598 agccaaggcctgtatctgaaagtccccctgg 1568 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 tcttcctaggattagataggagta 24 ||||||||||||||||||| |||| Sbjct: 2208 tcttcctaggattagatagtagta 2185
>ref|NM_190647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1893 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455 Query: 616 gg 617 || Sbjct: 1454 gg 1453
>gb|AY168645.1| Oryza sativa (japonica cultivar-group) COI1 mRNA, complete cds Length = 2088 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1714 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1655 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1654 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1595 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1594 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1535 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1534 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1475 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 1474 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1415 Query: 616 gg 617 || Sbjct: 1414 gg 1413
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 36743751 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 36743692 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 36743691 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 36743632 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 36743631 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 36743572 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 36743571 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 36743512 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 36743511 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 36743452 Query: 616 gg 617 || Sbjct: 36743451 gg 36743450
>gb|DQ028826.1| Oryza sativa (japonica cultivar-group) coronatine-insensitive 1 mRNA, complete cds Length = 1893 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455 Query: 616 gg 617 || Sbjct: 1454 gg 1453
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 70066 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 70007 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 70006 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 69947 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 69946 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 69887 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 69886 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 69827 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 69826 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 69767 Query: 616 gg 617 || Sbjct: 69766 gg 69765
>dbj|AK121543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A10, full insert sequence Length = 2163 Score = 167 bits (84), Expect = 5e-38 Identities = 247/302 (81%) Strand = Plus / Minus Query: 316 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 375 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1730 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1671 Query: 376 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 435 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1670 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1611 Query: 436 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 495 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1610 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1551 Query: 496 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 555 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1550 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1491 Query: 556 tagtgnatagttccactgtgctgnccaatatagttaaggcccacatctgaaaggccccct 615 || || ||| ||||||||| ||| || || ||| ||||||| |||||||||| || ||| Sbjct: 1490 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1431 Query: 616 gg 617 || Sbjct: 1430 gg 1429
>gb|AY111944.1| Zea mays CL896_2 mRNA sequence Length = 579 Score = 137 bits (69), Expect = 5e-29 Identities = 261/325 (80%) Strand = Plus / Minus Query: 167 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 226 |||| |||||||||||||||| || || ||| | || |||| ||||||| |||||| | Sbjct: 367 gtatctacagtcacgcaggatgcaaagtaacgagccaccgcggacagtccggcctccttc 308 Query: 227 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 286 || ||||| ||||| || || |||||||| || | || ||||| |||| ||||| Sbjct: 307 cagcgagggaatagtacgcgagaacctgagcatgggtgtcgacacaaggctgtccatccg 248 Query: 287 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 346 |||||| ||||| ||||||||| | | ||||||| ||||| ||||||||| | |||| Sbjct: 247 ccatcacccgacacgcgctctcgggacggggaggcacgaactcgatgttccagtacggcc 188 Query: 347 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 406 | ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 187 tggccatgagcatgaggtcccggcccgtctgagaggccctgtacccctgcacccatacgt 128 Query: 407 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 466 ||||||| || ||||| | || ||||| | |||| |||||||||||||||||||||| Sbjct: 127 acctcagcgagggcatctggagcacggccaccgccagggcccgctcgctgaagcagcagc 68 Query: 467 tccttaattcaagcttcagcaggtt 491 ||| | || |||||| ||||||| Sbjct: 67 ccctcagctccagcttccgcaggtt 43
>gb|AY109565.1| Zea mays CL896_1 mRNA sequence Length = 2190 Score = 137 bits (69), Expect = 5e-29 Identities = 234/289 (80%) Strand = Plus / Minus Query: 203 actgcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcc 262 |||| |||||||||| |||||| ||| ||||||||| || ||||| ||||| || || Sbjct: 1934 actgagggcagtccggcctccttccagcaagggagtaatacgcaaggacctgggcatggg 1875 Query: 263 tatcaacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcg 322 | |||||||| |||| |||||| |||||| |||| |||||||| | |||||||| Sbjct: 1874 tgtcaacacaaggctgtccatctgccatcacccgataagcgctctcgggaatgggaggcg 1815 Query: 323 taaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagagg 382 || |||||||||||| | ||||| ||||||||||||||||| |||| ||| |||||| Sbjct: 1814 cgaattcaatgttccagtacggcctggccatgagcatgaggtcctggcccgttcgagagg 1755 Query: 383 ctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggcca 442 ||||||| ||||||||||||| ||||||||| || ||||| | || ||||| | |||| Sbjct: 1754 ctctgtacccctgcacccatatgtacctcagcgagggcatctggagcacggccactgcca 1695 Query: 443 aagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggtt 491 ||| ||||||||||||||||||| ||| | || |||||| ||||||| Sbjct: 1694 gagctcgctcgctgaagcagcagcccctcagctcgagcttccgcaggtt 1646
>gb|BT019152.1| Zea mays clone Contig815.F mRNA sequence Length = 1411 Score = 131 bits (66), Expect = 3e-27 Identities = 231/286 (80%) Strand = Plus / Minus Query: 206 gcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcctat 265 |||| ||||||| |||||| ||| ||||| ||||| || || |||||||| || | | Sbjct: 1059 gcggacagtccggcctccttccagcgagggaatagtacgcgagaacctgagcatgggtgt 1000 Query: 266 caacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaa 325 | ||||| |||| ||||| |||||| ||||| ||||||||| | | ||||||| | Sbjct: 999 cgacacaaggctgtccatccgccatcacccgacacgcgctctcgggacggggaggcacga 940 Query: 326 actcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctc 385 |||| ||||||||| | ||||| ||||||||||||||||| ||||| || |||||||| | Sbjct: 939 actcgatgttccagtacggcctggccatgagcatgaggtcccggcccgtctgagaggccc 880 Query: 386 tgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggccaaag 445 |||| ||||||||||||||||||||||| || ||||| | || ||||| | |||| | Sbjct: 879 tgtacccctgcacccatacgtacctcagcgagggcatctggagcacggccaccgccaggg 820 Query: 446 cccgctcgctgaagcagcagctccttaattcaagcttcagcaggtt 491 ||||||||||||||||||||| ||| | || |||||| ||||||| Sbjct: 819 cccgctcgctgaagcagcagcccctcagctccagcttccgcaggtt 774
>gb|BT009618.1| Triticum aestivum clone wre1n.pk0122.d3:fis, full insert mRNA sequence Length = 1074 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 323 taaactcaatgttccagaaggg 344 |||||||||||||||||||||| Sbjct: 539 taaactcaatgttccagaaggg 518
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 gccaaagcccgctcgctgaag 459 ||||||||||||||||||||| Sbjct: 1513162 gccaaagcccgctcgctgaag 1513142
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 gccaaagcccgctcgctgaag 459 ||||||||||||||||||||| Sbjct: 1348610 gccaaagcccgctcgctgaag 1348590
>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198476 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 acagggctccccatcttccat 290 ||||||||||||||||||||| Sbjct: 96433 acagggctccccatcttccat 96453
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 acagggctccccatcttccat 290 ||||||||||||||||||||| Sbjct: 18199 acagggctccccatcttccat 18219
>emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on chromosome 4, complete sequence Length = 112610 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 catacaatacccacatacaaacata 107 ||||||| ||||||||||||||||| Sbjct: 106343 catacaacacccacatacaaacata 106367
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1270173 ccaaagcccgctcgctgaag 1270154
>gb|AF109907.1|DJ534K4 Homo sapiens S164 gene, partial cds; PS1 and hypothetical protein genes, complete cds; and S171 gene, partial cds Length = 216387 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 cacatctgaaaggccccctg 616 |||||||||||||||||||| Sbjct: 168912 cacatctgaaaggccccctg 168931
>gb|AC104317.2| Homo sapiens chromosome 8 clone RP11-383J24 map q24.13, complete sequence Length = 198700 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcaatgttccagaagggcct 347 |||||||||||||||||||| Sbjct: 21790 tcaatgttccagaagggcct 21771
>gb|AC122526.4| Mus musculus BAC clone RP24-500M11 from chromosome 14, complete sequence Length = 178534 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 caacgttacccagaagcatg 555 |||||||||||||||||||| Sbjct: 98786 caacgttacccagaagcatg 98767
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1273584 ccaaagcccgctcgctgaag 1273565
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1275938 ccaaagcccgctcgctgaag 1275919
>gb|AC025599.8| Homo sapiens chromosome 8, clone RP11-508K19, complete sequence Length = 158330 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tcagagaaggcattttcagt 429 |||||||||||||||||||| Sbjct: 89894 tcagagaaggcattttcagt 89875
>gb|AC016724.11| Homo sapiens BAC clone RP11-339F22 from 2, complete sequence Length = 197308 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agggccttgccatgagcatg 360 |||||||||||||||||||| Sbjct: 57473 agggccttgccatgagcatg 57492
>gb|AC004846.2|AC004846 Homo sapiens PAC clone RP4-647C14 from 14q24.3, complete sequence Length = 154616 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 597 cacatctgaaaggccccctg 616 |||||||||||||||||||| Sbjct: 105792 cacatctgaaaggccccctg 105773
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1269888 ccaaagcccgctcgctgaag 1269869
>gb|AC090192.19| Homo sapiens chromosome 8, clone RP11-383J24, complete sequence Length = 198899 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcaatgttccagaagggcct 347 |||||||||||||||||||| Sbjct: 21791 tcaatgttccagaagggcct 21772
>gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome 14, complete sequence Length = 192706 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 caacgttacccagaagcatg 555 |||||||||||||||||||| Sbjct: 158830 caacgttacccagaagcatg 158849
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 173 acagtcacgcaggatacagaggaacaac 200 ||||||||||||||| |||| ||||||| Sbjct: 2435516 acagtcacgcaggatgcagaagaacaac 2435543
>gb|AY944686.1| Homo sapiens interleukin 1 family, member 6 (epsilon) (IL1F6) gene, complete cds Length = 19140 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agggccttgccatgagcatg 360 |||||||||||||||||||| Sbjct: 12376 agggccttgccatgagcatg 12395
>tpe|BN000002.1|HSA000002 TPA: TPA_exp: Homo sapiens complete interleukin-1 gene cluster (Draft Contig) including IL1A (IL1F1), IL1B (IL1F2), IL1RN (IL1F3), IL1F5, IL1F6, IL1F7, IL1F8, IL1F9, IL1F10 Length = 495475 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agggccttgccatgagcatg 360 |||||||||||||||||||| Sbjct: 299927 agggccttgccatgagcatg 299946
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gctgcaaaactgattaatcc 521 |||||||||||||||||||| Sbjct: 349810 gctgcaaaactgattaatcc 349791
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 173 acagtcacgcaggatacagaggaacaac 200 ||||||||||||||| |||| ||||||| Sbjct: 482027 acagtcacgcaggatgcagaagaacaac 482000
>gb|AC102211.23| Mus musculus chromosome 3, clone RP24-369F14, complete sequence Length = 142790 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 atacccacatacaaacatat 108 |||||||||||||||||||| Sbjct: 6763 atacccacatacaaacatat 6782
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 gccgacccgcgctctccgtgccgg 316 |||||||||||||| ||||||||| Sbjct: 444188 gccgacccgcgctcaccgtgccgg 444165
>gb|AC141473.4| Mus musculus BAC clone RP24-187J17 from 3, complete sequence Length = 178156 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 atacccacatacaaacatat 108 |||||||||||||||||||| Sbjct: 32249 atacccacatacaaacatat 32230
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1811643 ccaaagcccgctcgctgaag 1811624
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1719707 ccaaagcccgctcgctgaag 1719688
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1176920 ccaaagcccgctcgctgaag 1176901
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 1828831 ccaaagcccgctcgctgaag 1828850
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ccaaagcccgctcgctgaag 459 |||||||||||||||||||| Sbjct: 2060396 ccaaagcccgctcgctgaag 2060415 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,581,858 Number of Sequences: 3902068 Number of extensions: 4581858 Number of successful extensions: 76227 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75838 Number of HSP's gapped (non-prelim): 385 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
