>RNE_PORPU (P51211) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)|
          Length = 511

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -3

Query: 195 HNQKNIVITEHNNCIPMLNHTGMENTWRCNRRSLVPTWELY 73
           +N KNIVI + N  +  LN+    NTW+CN  S +P+ +LY
Sbjct: 215 NNTKNIVI-DSNLGLKQLNY--YINTWQCNFSSTIPSLQLY 252

>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 283 HSQRHMLSHHKFDHSSPS*FLPKPCSLQG*FGHCQGQHLNP 405
           H + H   HH   HS P    P P   QG  GH  G H +P
Sbjct: 221 HDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGH-PGAHHDP 260

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 283 HSQRHMLSHHKFDHSSPS*FLPKPCSLQG*FGHCQGQHLNP 405
           H + H   HH   HS P    P P   QG  GH  G H +P
Sbjct: 221 HDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGH-PGAHHDP 260

>CNTN5_CHICK (Q90W79) Contactin-5 precursor (F11 axonin-1-related protein 2)|
           (FAR-2)
          Length = 1027

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 188 WLCKSERPFLLDENGRNMISE*GMVDLSGFMCIVNATCYHITNLTIPVPL 337
           ++ +  R F+  E G   IS+    D+  ++C+V  T  +   L+ P PL
Sbjct: 165 FVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARVLSPPTPL 214

>PVDG_PLAKN (P50494) Duffy receptor gamma form precursor (Erythrocyte-binding|
           protein)
          Length = 1070

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = -3

Query: 252 HSEIMFRPFSSRRKGLSDLHNQKNIVITEHNN 157
           HS+I+FR   SRR+ + D+  + ++++ ++NN
Sbjct: 258 HSDIIFRKSYSRRRLIYDVGGRGDLLLKKYNN 289

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 283 HSQRHMLSHHKFDHSSPS*FLPKPCSLQG*FGHCQGQHLNP 405
           H + H   HH   HS P    P P   QG  GH  G H +P
Sbjct: 219 HDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGH-PGAHHDP 258

>CNTN5_HUMAN (O94779) Contactin-5 precursor (Neural recognition molecule NB-2)|
           (hNB-2)
          Length = 1100

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 188 WLCKSERPFLLDENGRNMISE*GMVDLSGFMCIVNATCYHITNLTIPVPL 337
           ++ +  R F+  E G   IS+    D+  ++C+V  T  +   L+ P PL
Sbjct: 238 FVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARVLSPPTPL 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,418,355
Number of Sequences: 219361
Number of extensions: 1430705
Number of successful extensions: 3162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)