ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028I07, full insert sequence Length = 1837 Score = 222 bits (112), Expect = 1e-54 Identities = 291/350 (83%), Gaps = 8/350 (2%) Strand = Plus / Minus Query: 197 tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattttt 256 |||| ||||||||||||||||||| ||||| || ||| | ||||||| || |||| Sbjct: 1616 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 1562 Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1561 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 1505 Query: 317 ttgccacctagctggaaaccgttcatcatggcgattgccgactgtgcagacacagggttg 376 || | |||| |||||||||||||||| | || || | |||||| || |||| Sbjct: 1504 ttactgcctaattggaaaccgttcatcacaccaatggctgcctgtgcggaagcaggagaa 1445 Query: 377 tcatagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttg 436 || |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| Sbjct: 1444 tcgtagcttacaaaaccaaagcatttgctggaacccgttgctttgtctacaaaaacctta 1385 Query: 437 gcacttattactctaccaaacctctggaaggcatcggagagttcttggtcaccaaattct 496 ||||||| ||||||||| ||||||||||| |||| ||| || |||||||| ||| | ||| Sbjct: 1384 gcacttagtactctaccgaacctctggaatgcattggaaaggtcttggtccccataatct 1325 Query: 497 tgtgggatatgatagataaatagattggctccaggaggtccttctgtttg 546 |||||||||||||||||||||||||| ||||| ||||| |||||| |||| Sbjct: 1324 tgtgggatatgatagataaatagattagctcctggaggaccttctatttg 1275 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 attgaatgaatctgacttctggtgta 26 ||||||||||||||||||||| |||| Sbjct: 1776 attgaatgaatctgacttctgatgta 1751
>ref|NM_190082.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1383 Score = 210 bits (106), Expect = 4e-51 Identities = 243/288 (84%), Gaps = 3/288 (1%) Strand = Plus / Minus Query: 259 tcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttctt 318 |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| || Sbjct: 1383 tcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttttt 1327 Query: 319 gccacctagctggaaaccgttcatcatggcgattgccgactgtgcagacacagggttgtc 378 | |||| |||||||||||||||| | || || | |||||| || |||| || Sbjct: 1326 actgcctaattggaaaccgttcatcacaccaatggctgcctgtgcggaagcaggagaatc 1267 Query: 379 atagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggc 438 |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| || Sbjct: 1266 gtagcttacaaaaccaaagcatttgctggaacccgttgctttgtctacaaaaaccttagc 1207 Query: 439 acttattactctaccaaacctctggaaggcatcggagagttcttggtcaccaaattcttg 498 ||||| ||||||||| ||||||||||| |||| ||| || |||||||| ||| | ||||| Sbjct: 1206 acttagtactctaccgaacctctggaatgcattggaaaggtcttggtccccataatcttg 1147 Query: 499 tgggatatgatagataaatagattggctccaggaggtccttctgtttg 546 |||||||||||||||||||||||| ||||| ||||| |||||| |||| Sbjct: 1146 tgggatatgatagataaatagattagctcctggaggaccttctatttg 1099
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 395 aagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactctacca 454 ||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct: 41190748 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 41190689 Query: 455 aacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatgatagata 514 ||||||||||| |||| ||| || |||||||| ||| | ||||||||||||||||||||| Sbjct: 41190688 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 41190629 Query: 515 aatagattggctccaggagg 534 |||||||| ||||| ||||| Sbjct: 41190628 aatagattagctcctggagg 41190609 Score = 83.8 bits (42), Expect = 7e-13 Identities = 122/148 (82%), Gaps = 8/148 (5%) Strand = Plus / Minus Query: 197 tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattttt 256 |||| ||||||||||||||||||| ||||| || ||| | ||||||| || |||| Sbjct: 41191041 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 41190987 Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 41190986 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 41190930 Query: 317 ttgccacctagctggaaaccgttcatca 344 || | |||| |||||||||||||||| Sbjct: 41190929 ttactgcctaattggaaaccgttcatca 41190902 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 attgaatgaatctgacttctggtgta 26 ||||||||||||||||||||| |||| Sbjct: 41191201 attgaatgaatctgacttctgatgta 41191176
>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1150F11 Length = 130355 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 395 aagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactctacca 454 ||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct: 7663 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 7604 Query: 455 aacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatgatagata 514 ||||||||||| |||| ||| || |||||||| ||| | ||||||||||||||||||||| Sbjct: 7603 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 7544 Query: 515 aatagattggctccaggagg 534 |||||||| ||||| ||||| Sbjct: 7543 aatagattagctcctggagg 7524 Score = 83.8 bits (42), Expect = 7e-13 Identities = 122/148 (82%), Gaps = 8/148 (5%) Strand = Plus / Minus Query: 197 tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattttt 256 |||| ||||||||||||||||||| ||||| || ||| | ||||||| || |||| Sbjct: 7956 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 7902 Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 7901 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 7845 Query: 317 ttgccacctagctggaaaccgttcatca 344 || | |||| |||||||||||||||| Sbjct: 7844 ttactgcctaattggaaaccgttcatca 7817 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 attgaatgaatctgacttctggtgta 26 ||||||||||||||||||||| |||| Sbjct: 8116 attgaatgaatctgacttctgatgta 8091
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504E02 Length = 137468 Score = 159 bits (80), Expect = 1e-35 Identities = 125/140 (89%) Strand = Plus / Minus Query: 395 aagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactctacca 454 ||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct: 87803 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 87744 Query: 455 aacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatgatagata 514 ||||||||||| |||| ||| || |||||||| ||| | ||||||||||||||||||||| Sbjct: 87743 aacctctggaatgcattggaaaggtcttggtccccataatcttgtgggatatgatagata 87684 Query: 515 aatagattggctccaggagg 534 |||||||| ||||| ||||| Sbjct: 87683 aatagattagctcctggagg 87664 Score = 83.8 bits (42), Expect = 7e-13 Identities = 122/148 (82%), Gaps = 8/148 (5%) Strand = Plus / Minus Query: 197 tcaactatctgacaaatatgtaccgggaacaagaccgcattgtcatcacagatgattttt 256 |||| ||||||||||||||||||| ||||| || ||| | ||||||| || |||| Sbjct: 88096 tcaattatctgacaaatatgtaccaggaacctgatcgcgtggtcatcatag-----tttt 88042 Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 88041 cgtcaaaagggtttactgtgcttggagttgt---ctctcttgagttgtactttgagtttt 87985 Query: 317 ttgccacctagctggaaaccgttcatca 344 || | |||| |||||||||||||||| Sbjct: 87984 ttactgcctaattggaaaccgttcatca 87957 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 attgaatgaatctgacttctggtgta 26 ||||||||||||||||||||| |||| Sbjct: 88256 attgaatgaatctgacttctgatgta 88231
>dbj|AK073796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067B10, full insert sequence Length = 1739 Score = 159 bits (80), Expect = 1e-35 Identities = 229/278 (82%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 |||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 1495 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 1439 Query: 317 ttgccacctagctggaaaccgttcatcatggcgattgccgactgtgcagacacagggttg 376 || ||||||| ||| | ||||||||||| || || | ||||||||| |||| Sbjct: 1438 ttaccacctaattggtatccgttcatcatactaatggctgtctgtgcagaagcaggagaa 1379 Query: 377 tcatagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttg 436 |||||||||| ||||||||||||||| || ||||||||||||||| ||||| || || Sbjct: 1378 tcatagcttataaaaccgaagcatttactaagaccagttgctttgtctacaaaaacttta 1319 Query: 437 gcacttattactctaccaaacctctggaaggcatcggagagttcttggtcaccaaattct 496 ||||| | |||||||||||| | ||| |||||| ||| || |||||||| ||||||||| Sbjct: 1318 gcactcagtactctaccaaaaccctgaaaggcaccggcaagatcttggtcgccaaattct 1259 Query: 497 tgtgggatatgatagataaatagattggctccaggagg 534 || ||||| || |||||||||| ||||||||||||||| Sbjct: 1258 tgagggatgtggtagataaataaattggctccaggagg 1221 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 619 attgtgaggattcccaaaaggacgactatt 648 |||||||| |||| |||||||||||||||| Sbjct: 1139 attgtgagaattcacaaaaggacgactatt 1110
>dbj|AK073553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045O20, full insert sequence Length = 2722 Score = 159 bits (80), Expect = 1e-35 Identities = 229/278 (82%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 |||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 2516 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 2460 Query: 317 ttgccacctagctggaaaccgttcatcatggcgattgccgactgtgcagacacagggttg 376 || ||||||| ||| | ||||||||||| || || | ||||||||| |||| Sbjct: 2459 ttaccacctaattggtatccgttcatcatactaatggctgtctgtgcagaagcaggagaa 2400 Query: 377 tcatagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttg 436 |||||||||| ||||||||||||||| || ||||||||||||||| ||||| || || Sbjct: 2399 tcatagcttataaaaccgaagcatttactaagaccagttgctttgtctacaaaaacttta 2340 Query: 437 gcacttattactctaccaaacctctggaaggcatcggagagttcttggtcaccaaattct 496 ||||| | |||||||||||| | ||| |||||| ||| || |||||||| ||||||||| Sbjct: 2339 gcactcagtactctaccaaaaccctgaaaggcaccggcaagatcttggtcgccaaattct 2280 Query: 497 tgtgggatatgatagataaatagattggctccaggagg 534 || ||||| || |||||||||| ||||||||||||||| Sbjct: 2279 tgagggatgtggtagataaataaattggctccaggagg 2242 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 619 attgtgaggattcccaaaaggacgactatt 648 |||||||| |||| |||||||||||||||| Sbjct: 2159 attgtgagaattcacaaaaggacgactatt 2130
>gb|AC119289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0025P09, complete sequence Length = 167318 Score = 111 bits (56), Expect = 3e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactct 450 |||||||||||| || ||||||||||||||| ||||| || || ||||| | |||||| Sbjct: 116255 accgaagcatttactaagaccagttgctttgtctacaaaaactttagcactcagtactct 116196 Query: 451 accaaacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatgata 510 |||||| | ||| |||||| ||| || |||||||| ||||||||||| ||||| || || Sbjct: 116195 accaaaaccctgaaaggcaccggcaagatcttggtcgccaaattcttgagggatgtggta 116136 Query: 511 gataaatagattggctccaggagg 534 |||||||| ||||||||||||||| Sbjct: 116135 gataaataaattggctccaggagg 116112 Score = 69.9 bits (35), Expect = 1e-08 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 |||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 116461 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 116405 Query: 317 ttgccacctagctggaaaccgttcatcat 345 || ||||||| ||| | ||||||||||| Sbjct: 116404 ttaccacctaattggtatccgttcatcat 116376 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 619 attgtgaggattcccaaaaggacgactatt 648 |||||||| |||| |||||||||||||||| Sbjct: 115942 attgtgagaattcacaaaaggacgactatt 115913
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 111 bits (56), Expect = 3e-21 Identities = 122/144 (84%) Strand = Plus / Minus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactct 450 |||||||||||| || ||||||||||||||| ||||| || || ||||| | |||||| Sbjct: 17856301 accgaagcatttactaagaccagttgctttgtctacaaaaactttagcactcagtactct 17856242 Query: 451 accaaacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatgata 510 |||||| | ||| |||||| ||| || |||||||| ||||||||||| ||||| || || Sbjct: 17856241 accaaaaccctgaaaggcaccggcaagatcttggtcgccaaattcttgagggatgtggta 17856182 Query: 511 gataaatagattggctccaggagg 534 |||||||| ||||||||||||||| Sbjct: 17856181 gataaataaattggctccaggagg 17856158 Score = 69.9 bits (35), Expect = 1e-08 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 257 tgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtactttgagtttc 316 |||||| ||| ||||||||||||| |||||| ||||||||||||||||||| ||||| Sbjct: 17856507 tgtcaataagttttactgtgcttgctgttgt---ctctcttgagttgtactttcagtttt 17856451 Query: 317 ttgccacctagctggaaaccgttcatcat 345 || ||||||| ||| | ||||||||||| Sbjct: 17856450 ttaccacctaattggtatccgttcatcat 17856422 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 619 attgtgaggattcccaaaaggacgactatt 648 |||||||| |||| |||||||||||||||| Sbjct: 17855988 attgtgagaattcacaaaaggacgactatt 17855959
>gb|AY021985.1| Oryza sativa microsatellite MRG4310 containing (TC)X12, closest to marker R1014A, genomic sequence Length = 224 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 395 aagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactctacca 454 ||||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct: 94 aagcatttgctggaacccgttgctttgtctacaaaaaccttagcacttagtactctaccg 35 Query: 455 aacctctggaaggcatcggagagttcttggtc 486 ||||||||||| |||| ||| || |||||||| Sbjct: 34 aacctctggaatgcattggaaaggtcttggtc 3
>gb|AY107712.1| Zea mays PCO079656 mRNA sequence Length = 471 Score = 81.8 bits (41), Expect = 3e-12 Identities = 146/181 (80%) Strand = Plus / Minus Query: 270 tactgtgcttgttgttgttgtctctcttgagttgtactttgagtttcttgccacctagct 329 ||||||||||| ||||||| |||||||| |||||||| |||||||| || || |||| || Sbjct: 191 tactgtgcttggtgttgttttctctcttcagttgtaccttgagttttttaccgcctaact 132 Query: 330 ggaaaccgttcatcatggcgattgccgactgtgcagacacagggttgtcatagcttacaa 389 || | ||||||||| || ||| || | ||| || || |||| ||| ||||| |||| Sbjct: 131 ggtagccgttcatcctgttgatggctgcctgcgcggaggcaggagagtcgtagctcacaa 72 Query: 390 aaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcacttattactc 449 |||||||||||||||| || ||||||||||| || |||||||| || |||| ||||| Sbjct: 71 aaccgaagcatttgctcacgcccgttgctttgtccacgaacaccttagcgcttactactc 12 Query: 450 t 450 | Sbjct: 11 t 11
>ref|XM_475151.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1146 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 449 ctaccaaacctctggaaggcatcggagagttcttggtcaccaaattcttgtgggatatga 508 |||||||| | ||| |||||| ||| || |||||||| ||||||||||| ||||| || Sbjct: 1146 ctaccaaaaccctgaaaggcaccggcaagatcttggtcgccaaattcttgagggatgtgg 1087 Query: 509 tagataaatagattggctccaggagg 534 |||||||||| ||||||||||||||| Sbjct: 1086 tagataaataaattggctccaggagg 1061 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 619 attgtgaggattcccaaaaggacgactatt 648 |||||||| |||| |||||||||||||||| Sbjct: 975 attgtgagaattcacaaaaggacgactatt 946
>ref|NM_116545.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110 transcript variant AT4G03110.1 mRNA, complete cds Length = 1759 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 376 gtcatagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacacctt 435 ||||||||| ||||||||||| |||||||| |||||| |||||||| ||||| ||||| Sbjct: 1321 gtcatagctaacaaaaccgaaacatttgcttacaccagtggctttgtctacaaaaacctt 1262 Query: 436 ggcact 441 |||||| Sbjct: 1261 ggcact 1256
>gb|AY084669.1| Arabidopsis thaliana clone 114653 mRNA, complete sequence Length = 1746 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 376 gtcatagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacacctt 435 ||||||||| ||||||||||| |||||||| |||||| |||||||| ||||| ||||| Sbjct: 1322 gtcatagctaacaaaaccgaaacatttgcttacaccagtggctttgtctacaaaaacctt 1263 Query: 436 ggcact 441 |||||| Sbjct: 1262 ggcact 1257
>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence Length = 101563 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 278 ttgttgttgttgtctctcttgagttgtactttgagtttcttgccacctagctggaaaccg 337 |||||||||||||||||||| || || ||||| |||||||| ||||||| ||| |||| Sbjct: 50317 ttgttgttgttgtctctcttaagctggactttcagtttcttaccacctaaatgggaacca 50376 Query: 338 ttcatcatg 346 ||||||||| Sbjct: 50377 ttcatcatg 50385
>gb|AY104506.1| Zea mays PCO080326 mRNA sequence Length = 1081 Score = 58.0 bits (29), Expect = 4e-05 Identities = 49/55 (89%), Gaps = 3/55 (5%) Strand = Plus / Minus Query: 255 tttgtcaaaaaggtttactgtgcttgttgttgttgtctctcttgagttgtacttt 309 ||||||| ||||||||||||||| ||| |||||||||||||||| |||||||| Sbjct: 774 tttgtcagaaaggtttactgtgc---ttgctgttgtctctcttgagctgtacttt 723 Score = 46.1 bits (23), Expect = 0.14 Identities = 122/155 (78%) Strand = Plus / Minus Query: 380 tagcttacaaaaccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggca 439 |||||||| ||||| |||||||| || ||||||||| ||||| || || || ||||| Sbjct: 652 tagcttacgaaaccaaagcatttactaacaccagttgccttgtctacgaaaactttggcg 593 Query: 440 cttattactctaccaaacctctggaaggcatcggagagttcttggtcaccaaattcttgt 499 || | ||| ||||| || || ||||| ||| || || || |||||||| |||||||| Sbjct: 592 ctcagtaccctaccgaaactatggaatgcactggcaagatcatggtcaccgaattcttgc 533 Query: 500 gggatatgatagataaatagattggctccaggagg 534 ||||| || || || || | ||||||||||||||| Sbjct: 532 gggatgtggtatatgaacaaattggctccaggagg 498
>gb|BC045035.1| Xenopus laevis CUG triplet repeat, RNA binding protein 2, mRNA (cDNA clone MGC:53221 IMAGE:5543352), complete cds Length = 3420 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| ||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 1582 tgtgcagagacaggattgtcatagctaacaaaaccaaagcacttgct 1536
>gb|U69547.1|XLU69547 Xenopus laevis RNA binding protein Etr-3 (etr-3) mRNA, complete cds Length = 1909 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| ||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 1589 tgtgcagagacaggattgtcatagctaacaaaaccaaagcacttgct 1543
>emb|AJ851563.1| Gallus gallus mRNA for hypothetical protein, clone 7f23 Length = 4552 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 358 ctgtgcagacacagggttgtcatagcttacaaaacc 393 ||||||||| ||||| |||||||| ||||||||||| Sbjct: 1562 ctgtgcagagacaggattgtcataacttacaaaacc 1527
>ref|NM_001012521.1| Gallus gallus CUG triplet repeat, RNA binding protein 1 (CUGBP1), mRNA Length = 4552 Score = 48.1 bits (24), Expect = 0.037 Identities = 33/36 (91%) Strand = Plus / Minus Query: 358 ctgtgcagacacagggttgtcatagcttacaaaacc 393 ||||||||| ||||| |||||||| ||||||||||| Sbjct: 1562 ctgtgcagagacaggattgtcataacttacaaaacc 1527
>ref|NM_178963.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G03110 transcript variant AT4G03110.2 mRNA, complete cds Length = 1847 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcact 441 |||||| |||||||| |||||| |||||||| ||||| ||||||||||| Sbjct: 1299 accgaaacatttgcttacaccagtggctttgtctacaaaaaccttggcact 1249
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence Length = 98913 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcact 441 |||||| |||||||| |||||| |||||||| ||||| ||||||||||| Sbjct: 6487 accgaaacatttgcttacaccagtggctttgtctacaaaaaccttggcact 6437
>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence Length = 136335 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcact 441 |||||| |||||||| |||||| |||||||| ||||| ||||||||||| Sbjct: 9629 accgaaacatttgcttacaccagtggctttgtctacaaaaaccttggcact 9679
>gb|AY288986.1| Gallus gallus ELAV-type RNA-binding protein 3 variant L mRNA, complete cds, alternatively spliced Length = 1455 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1361 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1315
>gb|AY288985.1| Gallus gallus ELAV-type RNA-binding protein 3 variant 4 mRNA, complete cds, alternatively spliced Length = 1467 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1373 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1327
>emb|Y18298.1|MMU18298 Mus musculus mRNA for elav-type RNA-binding protein Length = 1485 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1391 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1345
>ref|XM_775954.1| PREDICTED: Strongylocentrotus purpuratus similar to bruno-like 6, RNA binding protein (LOC575560), mRNA Length = 1068 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 371 gggttgtcatagcttacaaaaccgaagcatttgct 405 ||||||||| |||| |||||||||||||| ||||| Sbjct: 962 gggttgtcaaagctcacaaaaccgaagcacttgct 928
>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 Length = 195429 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Plus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcact 441 |||||| |||||||| |||||| |||||||| ||||| ||||||||||| Sbjct: 28000 accgaaacatttgcttacaccagtggctttgtctacaaaaaccttggcact 28050
>gb|AY065261.1| Arabidopsis thaliana putative ribonucleoprotein (At4g03110) mRNA, complete cds Length = 1842 Score = 46.1 bits (23), Expect = 0.14 Identities = 44/51 (86%) Strand = Plus / Minus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcact 441 |||||| |||||||| |||||| |||||||| ||||| ||||||||||| Sbjct: 1275 accgaaacatttgcttacaccagtggctttgtctacaaaaaccttggcact 1225
>emb|AJ010386.1|RNO010386 Rattus norvegicus mRNA for ETR-R3b protein, alternatively spliced isoform Length = 2096 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1730 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1684
>emb|AJ010351.1|RNO010351 Rattus norvegicus mRNA for ETR-R3a protein, alternatively spliced isoform Length = 2547 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1607 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1561
>ref|NM_010160.1| Mus musculus CUG triplet repeat, RNA binding protein 2 (Cugbp2), mRNA Length = 5446 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1498 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1452
>dbj|AK137292.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530098D08 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 2127 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1565 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1519
>dbj|AK151818.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830038L03 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 2314 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1395 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1349
>dbj|AK161349.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930438K20 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 1241 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 933 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 887
>ref|XM_696884.1| PREDICTED: Danio rerio hypothetical protein LOC554850 (LOC554850), mRNA Length = 2773 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 371 gggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| ||||||||||||| ||||||||||| Sbjct: 1462 gggttgtcgaagcttacaaaaccaaagcatttgct 1428
>dbj|AK153267.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830130J01 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 2314 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1395 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1349
>dbj|AK160861.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched library, clone:3632429A13 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 2447 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1606 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1560
>dbj|AK164914.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030020B06 product:CUG triplet repeat,RNA binding protein 2, full insert sequence Length = 2526 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1553 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1507
>gb|AY052559.1| Xenopus laevis bruno-like protein 3 (brunol-3) mRNA, partial cds Length = 997 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaacc 393 |||||||| ||||| ||||||||||| |||||||| Sbjct: 35 tgtgcagagacaggattgtcatagctaacaaaacc 1
>gb|BC026856.1| Mus musculus CUG triplet repeat, RNA binding protein 2, mRNA (cDNA clone MGC:25225 IMAGE:4503295), complete cds Length = 3587 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1476 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1430
>ref|NM_204260.1| Gallus gallus CUG triplet repeat, RNA binding protein 2 (CUGBP2), mRNA Length = 1467 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1373 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1327
>gb|AF169013.1|AF169013 Rattus norvegicus RNA binding protein NAPOR-3 mRNA, partial cds Length = 1634 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 588 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 542
>dbj|AK208664.1| Mus musculus cDNA, clone:Y2G0112F20, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000068747, based on BLAT search Length = 381 Score = 46.1 bits (23), Expect = 0.14 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 307 acaggattgtcataacttacaaaaccaaagcanttgct 270
>gb|AF090697.1|AF090697 Mus musculus apoptosis-related RNA binding protein (Napor-3) mRNA, complete cds Length = 5446 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1498 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1452
>gb|AF090696.1|AF090696 Mus musculus apoptosis-related RNA binding protein (Napor-1) mRNA, complete cds Length = 5546 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1598 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1552
>gb|AF090695.1|AF090695 Rattus norvegicus apoptosis-related RNA binding protein (NAPOR-3) mRNA, complete cds Length = 1633 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1498 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1452
>ref|NM_017197.1| Rattus norvegicus CUG triplet repeat, RNA binding protein 2 (Cugbp2), mRNA Length = 2547 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 359 tgtgcagacacagggttgtcatagcttacaaaaccgaagcatttgct 405 |||||||| || || ||||||||||| |||||||| ||||| ||||| Sbjct: 1607 tgtgcagagactggattgtcatagctaacaaaaccaaagcacttgct 1561
>ref|XM_879783.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 8 (LOC540475), mRNA Length = 2394 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1587 acaggattgtcataacttacaaaaccgaaacacttgct 1550
>ref|XM_867177.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 2 (LOC540475), mRNA Length = 2561 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1626 acaggattgtcataacttacaaaaccgaaacacttgct 1589
>ref|XM_879735.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 7 (LOC540475), mRNA Length = 2570 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1635 acaggattgtcataacttacaaaaccgaaacacttgct 1598
>ref|XM_879705.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 6 (LOC540475), mRNA Length = 2588 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1653 acaggattgtcataacttacaaaaccgaaacacttgct 1616
>ref|XM_879679.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 5 (LOC540475), mRNA Length = 2570 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1635 acaggattgtcataacttacaaaaccgaaacacttgct 1598
>ref|XM_611631.2| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 1 (LOC540475), mRNA Length = 2291 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1587 acaggattgtcataacttacaaaaccgaaacacttgct 1550
>ref|XM_879614.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 4 (LOC540475), mRNA Length = 2522 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1587 acaggattgtcataacttacaaaaccgaaacacttgct 1550
>ref|XM_879584.1| PREDICTED: Bos taurus similar to CUG triplet repeat, RNA-binding protein 1 isoform 1, transcript variant 3 (LOC540475), mRNA Length = 2482 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1587 acaggattgtcataacttacaaaaccgaaacacttgct 1550
>ref|NM_198683.1| Mus musculus CUG triplet repeat, RNA binding protein 1 (Cugbp1), transcript variant 2, mRNA Length = 2197 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1552 acaggattgtcataacttacaaaaccaaagcacttgct 1515
>ref|NM_017368.2| Mus musculus CUG triplet repeat, RNA binding protein 1 (Cugbp1), transcript variant 1, mRNA Length = 2349 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1704 acaggattgtcataacttacaaaaccaaagcacttgct 1667
>gb|BC021393.1| Mus musculus CUG triplet repeat, RNA binding protein 1, mRNA (cDNA clone IMAGE:5068376), with apparent retained intron Length = 3324 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1478 acaggattgtcataacttacaaaaccaaagcacttgct 1441
>emb|AJ007987.1|MMU7987 Mus musculus mRNA for deadenylation factor EDEN-BP Length = 1461 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1358 acaggattgtcataacttacaaaaccaaagcacttgct 1321
>emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 in linkage group 17, complete sequence Length = 161999 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 251 attttttgtcaaaaaggtttac 272 |||||||||||||||||||||| Sbjct: 74341 attttttgtcaaaaaggtttac 74320
>dbj|AK135030.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430547M02 product:CUG triplet repeat, RNA binding protein 1, full insert sequence Length = 2017 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 165 acaggattgtcataacttacaaaaccaaagcacttgct 128
>dbj|AK143698.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430010P06 product:CUG triplet repeat, RNA binding protein 1, full insert sequence Length = 3427 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1567 acaggattgtcataacttacaaaaccaaagcacttgct 1530
>dbj|AK156725.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830044E18 product:CUG triplet repeat, RNA binding protein 1, full insert sequence Length = 3380 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1526 acaggattgtcataacttacaaaaccaaagcacttgct 1489
>dbj|AK014492.1| Mus musculus 14 days embryo liver cDNA, RIKEN full-length enriched library, clone:4432412L08 product:CUG triplet repeat, RNA binding protein 1, full insert sequence Length = 3444 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1529 acaggattgtcataacttacaaaaccaaagcacttgct 1492
>gb|AF314172.1|AF314172 Mus musculus BRUNOL2 (Brunol2) mRNA, partial cds Length = 1313 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1210 acaggattgtcataacttacaaaaccaaagcacttgct 1173
>gb|AF267535.1|AF267535 Mus musculus CUG-binding protein LYLQ isoform mRNA, complete cds Length = 1589 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 1369 acaggattgtcataacttacaaaaccaaagcacttgct 1332
>dbj|AK196827.1| Mus musculus cDNA, clone:Y1G0123C05, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000068747, based on BLAT search Length = 386 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 311 acaggattgtcataacttacaaaaccaaagcacttgct 274
>dbj|AK183548.1| Mus musculus cDNA, clone:Y0G0126F10, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000068747, based on BLAT search Length = 425 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagcatttgct 405 ||||| |||||||| ||||||||||| ||||| ||||| Sbjct: 373 acaggattgtcataacttacaaaaccaaagcacttgct 336
>gb|AC018631.3| Drosophila melanogaster clone BACR03I06, complete sequence Length = 169851 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 ttttgtcaaaaaggtttactgtgct 278 |||||||||||||||| |||||||| Sbjct: 122659 ttttgtcaaaaaggttaactgtgct 122635
>ref|XM_817392.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.5420) partial mRNA Length = 1446 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 279 tgttgttgttgtctctcttga 299 ||||||||||||||||||||| Sbjct: 752 tgttgttgttgtctctcttga 732
>ref|NM_001017152.2| Xenopus tropicalis CUG triplet repeat, RNA binding protein 1 (cugbp1), mRNA Length = 1971 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 374 ttgtcatagcttacaaaaccgaagcatttgctg 406 |||||||||||||| ||||| || ||||||||| Sbjct: 1511 ttgtcatagcttacgaaaccaaaacatttgctg 1479
>emb|AL645691.20| Zebrafish DNA sequence from clone RP71-1L17 in linkage group 4 Contains the gene for a novel protein similar to vertebrate pim-1 oncogene (PIM1) and two CpG islands, complete sequence Length = 146489 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 atgattttttgtcaaaaaggt 268 ||||||||||||||||||||| Sbjct: 112008 atgattttttgtcaaaaaggt 111988
>gb|AC154879.10| Mus musculus chromosome 1, clone RP24-276N20, complete sequence Length = 199527 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 531 gaggtccttctgtttgtgttt 551 ||||||||||||||||||||| Sbjct: 135435 gaggtccttctgtttgtgttt 135455
>gb|AC008989.6| Homo sapiens chromosome 19 clone LLNL-F_219B11, complete sequence Length = 44222 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 gatatgatagataaatagatt 522 ||||||||||||||||||||| Sbjct: 10856 gatatgatagataaatagatt 10836
>gb|AC163694.2| Mus musculus BAC clone RP24-80O2 from chromosome 16, complete sequence Length = 244730 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 ttgttgtctctcttgagttgt 304 ||||||||||||||||||||| Sbjct: 59888 ttgttgtctctcttgagttgt 59868
>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I, complete sequence Length = 101176 Score = 42.1 bits (21), Expect = 2.3 Identities = 45/53 (84%) Strand = Plus / Plus Query: 391 accgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 |||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 25173 accgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 25225
>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18, complete sequence Length = 214763 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 tactgtgcttgttgttgttgt 290 ||||||||||||||||||||| Sbjct: 120025 tactgtgcttgttgttgttgt 120045
>emb|CR760913.2| Xenopus tropicalis finished cDNA, clone TEgg064f02 Length = 1971 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 374 ttgtcatagcttacaaaaccgaagcatttgctg 406 |||||||||||||| ||||| || ||||||||| Sbjct: 1511 ttgtcatagcttacgaaaccaaaacatttgctg 1479
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete sequence Length = 585533 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 ttttgtcaaaaaggtttactgtgct 278 |||||||||||||||| |||||||| Sbjct: 299375 ttttgtcaaaaaggttaactgtgct 299399
>emb|CT030641.11| Mouse DNA sequence from clone RP23-32M15 on chromosome 16, complete sequence Length = 224292 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 ttgttgtctctcttgagttgt 304 ||||||||||||||||||||| Sbjct: 21142 ttgttgtctctcttgagttgt 21162
>ref|NM_202023.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G03457 transcript variant AT1G03457.2 mRNA, complete cds Length = 1648 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1158 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1107
>ref|NM_100228.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G03457 transcript variant AT1G03457.1 mRNA, complete cds Length = 1640 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1150 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1099
>ref|NM_124994.3| Arabidopsis thaliana unknown protein AT5G56120 mRNA, complete cds Length = 1027 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 156 ttgttgttgttgtctctctt 137
>ref|NM_119810.1| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase AT4G36470 mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ttgttgttgtctctcttgag 300 |||||||||||||||||||| Sbjct: 380 ttgttgttgtctctcttgag 361
>ref|XM_639566.1| Dictyostelium discoideum hypothetical protein (DDB0217191), partial mRNA Length = 2238 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgcttgttgttgttgtctc 293 |||||||||||||||||||| Sbjct: 118 gtgcttgttgttgttgtctc 99
>ref|XM_639501.1| Dictyostelium discoideum hypothetical protein (DDB0185148), partial mRNA Length = 2238 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgcttgttgttgttgtctc 293 |||||||||||||||||||| Sbjct: 118 gtgcttgttgttgttgtctc 99
>gb|BC072134.1| Xenopus laevis ribonucleoprotein, mRNA (cDNA clone MGC:79970 IMAGE:4679790), complete cds Length = 2497 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 374 ttgtcatagcttacaaaaccgaagcatttgct 405 |||||| | |||||||||||||| |||||||| Sbjct: 1663 ttgtcaaaacttacaaaaccgaaacatttgct 1632
>gb|BC073316.1| Xenopus laevis cDNA clone MGC:80719 IMAGE:5511863, complete cds Length = 3275 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 497 tgtgggatatgatagataaataga 520 |||||||||| ||||||||||||| Sbjct: 2814 tgtgggatataatagataaataga 2837
>gb|BT014888.1| Arabidopsis thaliana unknown protein (At4g36470) mRNA, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ttgttgttgtctctcttgag 300 |||||||||||||||||||| Sbjct: 380 ttgttgttgtctctcttgag 361
>gb|AC101559.20| Mus musculus chromosome 5, clone RP23-194K16, complete sequence Length = 252554 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 ataataaaataacacaatgc 78 |||||||||||||||||||| Sbjct: 119250 ataataaaataacacaatgc 119269
>gb|BT011992.1| Arabidopsis thaliana At4g36470 mRNA sequence Length = 1113 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ttgttgttgtctctcttgag 300 |||||||||||||||||||| Sbjct: 377 ttgttgttgtctctcttgag 358
>gb|BC057704.1| Xenopus laevis ribonucleoprotein, mRNA (cDNA clone MGC:68437 IMAGE:4724645), complete cds Length = 3217 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 374 ttgtcatagcttacaaaaccgaagcatttgct 405 |||||| | |||||||||||||| |||||||| Sbjct: 1625 ttgtcaaaacttacaaaaccgaaacatttgct 1594
>gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, complete sequence Length = 172155 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 502 gatatgatagataaatagat 521 |||||||||||||||||||| Sbjct: 12822 gatatgatagataaatagat 12841
>gb|BT010876.1| Arabidopsis thaliana At5g56120 gene, complete cds Length = 711 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 75 ttgttgttgttgtctctctt 56
>gb|AC139183.4| Mus musculus BAC clone RP24-114C21 from chromosome 18, complete sequence Length = 147109 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 115319 ttgttgttgttgtctctctt 115338
>gb|AC006979.2| Homo sapiens BAC clone GS1-85B12 from 7, complete sequence Length = 103563 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 gtgggatatgatagataaatagat 521 |||||| ||||||||||||||||| Sbjct: 14581 gtgggagatgatagataaatagat 14604
>gb|AC159889.2| Mus musculus BAC clone RP24-81G6 from chromosome 9, complete sequence Length = 154807 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 ttactgtgcttgttgttgttgtct 292 ||||||||||| |||||||||||| Sbjct: 57037 ttactgtgcttattgttgttgtct 57014
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part of one variant of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2, complete sequence Length = 66959 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gcattgtcatcacagatgat 252 |||||||||||||||||||| Sbjct: 50378 gcattgtcatcacagatgat 50359
>emb|AL512632.8| Human DNA sequence from clone RP11-538O14 on chromosome 10, complete sequence Length = 42010 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 attttttgtcaaaaaggttt 270 |||||||||||||||||||| Sbjct: 28453 attttttgtcaaaaaggttt 28434
>emb|AL356111.13| Human DNA sequence from clone RP11-501G6 on chromosome 13 Contains a novel gene, complete sequence Length = 150955 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cttgttgttgttgtctctct 296 |||||||||||||||||||| Sbjct: 105234 cttgttgttgttgtctctct 105253
>gb|AC078794.13| Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154667 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 attgaatgaatctgacttct 20 |||||||||||||||||||| Sbjct: 4855 attgaatgaatctgacttct 4874
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ttgttgttgtctctcttgag 300 |||||||||||||||||||| Sbjct: 153408 ttgttgttgtctctcttgag 153389
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cagatgattttttgtcaaaa 264 |||||||||||||||||||| Sbjct: 4546993 cagatgattttttgtcaaaa 4547012
>emb|AL772136.5| Zebrafish DNA sequence from clone CH211-188C22 in linkage group 7 Contains a novel gene similar PLCB (phospholipase C beta), a novel gene similar to PPP1R14B (protein phosphatase 1, regulatory inhibitor subunit 14B) and part of a novel gene similar to BRMS1 (breast cancer metastasis-suppressor 1), complete sequence Length = 147497 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 507 gatagataaatagattggctccag 530 |||||||| ||||||||||||||| Sbjct: 28606 gatagatagatagattggctccag 28629
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ttgttgttgtctctcttgag 300 |||||||||||||||||||| Sbjct: 97320 ttgttgttgtctctcttgag 97339
>emb|AJ238410.1|HSA238410 Homo sapiens partial HLA-DRB1 gene for MHC class II antigen, DRB1*04 allele, exon 2 Length = 221 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 524 gctccaggaggtccttctgtttgt 547 ||||||||||||||||||| |||| Sbjct: 170 gctccaggaggtccttctggttgt 147
>emb|BX005003.10| Zebrafish DNA sequence from clone DKEY-241F8 in linkage group 13, complete sequence Length = 172889 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 86477 ttgttgttgttgtctctctt 86458
>gb|AC104165.2| Homo sapiens chromosome 3 clone RP11-681O4, complete sequence Length = 200956 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gtttactgtgcttgttgttg 286 |||||||||||||||||||| Sbjct: 102711 gtttactgtgcttgttgttg 102692
>gb|AC135795.21| Medicago truncatula clone mth2-28g10, complete sequence Length = 110937 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttttttgtcaaaaaggttta 271 |||||||||||||||||||| Sbjct: 86487 ttttttgtcaaaaaggttta 86468
>gb|AY191018.1| Dictyostelium discoideum autophagy protein 4 (apg4) gene, complete cds Length = 2694 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gtgcttgttgttgttgtctc 293 |||||||||||||||||||| Sbjct: 248 gtgcttgttgttgttgtctc 229
>ref|NM_137273.2| Drosophila melanogaster CG8060-RA (CG8060), mRNA Length = 4003 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 2789 tccttctgtttgtgtttggc 2770
>gb|AY061600.1| Drosophila melanogaster SD05384 full length cDNA Length = 4022 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 2789 tccttctgtttgtgtttggc 2770
>emb|AL844143.17| Mouse DNA sequence from clone RP23-370D19 on chromosome 4, complete sequence Length = 159305 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 taataaaataacacaatgcaacaa 83 ||||||||||| |||||||||||| Sbjct: 113818 taataaaataaaacaatgcaacaa 113841
>gb|AC151523.4| Medicago truncatula chromosome 7 BAC clone mth2-166j21, complete sequence Length = 123340 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 31122 ttgttgttgttgtctctctt 31103
>gb|AC158774.6| Mus musculus chromosome 18, clone RP23-427N16, complete sequence Length = 207351 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 103296 ttgttgttgttgtctctctt 103315
>gb|AC157935.3| Mus musculus chromosome 5, clone RP24-228K8, complete sequence Length = 147812 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 gatatgatagataaatagat 521 |||||||||||||||||||| Sbjct: 64567 gatatgatagataaatagat 64548
>gb|AC009356.3|AC009356 Drosophila melanogaster, chromosome 2R, region 52E-53A, BAC clone BACR25I17, complete sequence Length = 157835 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 78866 tccttctgtttgtgtttggc 78885
>emb|BX814329.1|CNS0ADRA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZE04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1609 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1152 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1101
>emb|BX814331.1|CNS0ADSC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1598 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1158 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1107
>emb|BX817177.1|CNS0ADAA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH90ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1571 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1131 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1080
>gb|AC157502.2| Medicago truncatula chromosome 7 BAC clone mte1-56e23, complete sequence Length = 108844 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttttttgtcaaaaaggttta 271 |||||||||||||||||||| Sbjct: 3190 ttttttgtcaaaaaggttta 3171
>gb|AC008230.4|AC008230 Drosophila melanogaster, chromosome 2R, region 53A-53C, BAC clone BACR17I17, complete sequence Length = 159640 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 55416 tccttctgtttgtgtttggc 55435
>gb|AC124787.6| Mus musculus chromosome 18, clone RP24-395J18, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 120858 ttgttgttgttgtctctctt 120877
>gb|BT005358.1| Arabidopsis thaliana At1g03457 mRNA, complete cds Length = 1290 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1121 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1070
>gb|AC116330.2| Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence Length = 132254 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 gtgcttgttgttgttgtctc 293 |||||||||||||||||||| Sbjct: 51232 gtgcttgttgttgttgtctc 51251
>dbj|AK200025.1| Mus musculus cDNA, clone:Y1G0133C06, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000068747, based on BLAT search Length = 396 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 368 acagggttgtcatagcttacaaaaccgaagca 399 ||||| |||||||| ||||||||||| ||||| Sbjct: 321 acaggattgtcataacttacaaaaccaaagca 290
>dbj|AK176891.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-45-H17 Length = 1175 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 185 ttgttgttgttgtctctctt 166
>dbj|AK117246.1| Arabidopsis thaliana At1g03460 mRNA for putative ribonucleoprotein, complete cds, clone: RAFL16-79-N10 Length = 1641 Score = 40.1 bits (20), Expect = 8.9 Identities = 44/52 (84%) Strand = Plus / Minus Query: 392 ccgaagcatttgctggaaccagttgctttgtcaacaaacaccttggcactta 443 ||||| |||||||| |||||| || ||||| |||||||||||||| |||| Sbjct: 1150 ccgaaacatttgcttataccagtggccttgtctacaaacaccttggcgctta 1099
>dbj|AB011476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDA7 Length = 82033 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctctt 297 |||||||||||||||||||| Sbjct: 55877 ttgttgttgttgtctctctt 55858
>gb|AE003807.3| Drosophila melanogaster chromosome 2R, section 43 of 73 of the complete sequence Length = 258223 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 114481 tccttctgtttgtgtttggc 114500
>dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete sequence Length = 186656 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 278 ttgttgttgttgtctctcttgagttgta 305 ||||||||||||| | |||||||||||| Sbjct: 49861 ttgttgttgttgtttttcttgagttgta 49834
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 attcgctgggcggcacggtg 156 |||||||||||||||||||| Sbjct: 2419060 attcgctgggcggcacggtg 2419079
>gb|AC004318.1|AC004318 Drosophila melanogaster DNA sequence (P1 DS06464 (D212)), complete sequence Length = 86188 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 tccttctgtttgtgtttggc 554 |||||||||||||||||||| Sbjct: 80225 tccttctgtttgtgtttggc 80244
>gb|U16800.1|XLU16800 Xenopus laevis elav-type ribonucleoprotein (etr-1) mRNA, complete cds Length = 2363 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 374 ttgtcatagcttacaaaaccgaagcatttgct 405 |||||| | |||||||||||||| |||||||| Sbjct: 1547 ttgtcaaaacttacaaaaccgaaacatttgct 1516 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,167,183 Number of Sequences: 3902068 Number of extensions: 7167183 Number of successful extensions: 147132 Number of sequences better than 10.0: 135 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146750 Number of HSP's gapped (non-prelim): 371 length of query: 653 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 630 effective length of database: 17,143,297,704 effective search space: 10800277553520 effective search space used: 10800277553520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
