ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdo06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482519.1| Oryza sativa (japonica cultivar-group), mRNA 418 e-113
2ref|XM_507237.1| PREDICTED Oryza sativa (japonica cultivar-group... 418 e-113
3dbj|AK101681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 418 e-113
4dbj|AK102785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 410 e-111
5gb|AY109250.1| Zea mays PCO087848 mRNA sequence 212 1e-51
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
7dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
8ref|NM_121609.2| Arabidopsis thaliana Ran GTPase binding / chrom... 82 3e-12
9emb|BX830402.1|CNS0A1C5 Arabidopsis thaliana Full-length cDNA Co... 82 3e-12
10gb|AY085145.1| Arabidopsis thaliana clone 13316 mRNA, complete s... 82 3e-12
11ref|NM_111118.3| Arabidopsis thaliana Ran GTPase binding / chrom... 66 2e-07
12ref|NM_001035546.1| Arabidopsis thaliana Ran GTPase binding / ch... 62 3e-06
13emb|BX823346.1|CNS0A6KE Arabidopsis thaliana Full-length cDNA Co... 62 3e-06
14emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BA... 60 1e-05
15emb|BX824696.1|CNS0A6SX Arabidopsis thaliana Full-length cDNA Co... 60 1e-05
16gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence 58 4e-05
17emb|BX822851.1|CNS0A7AJ Arabidopsis thaliana Full-length cDNA Co... 52 0.003
18gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 48 0.041
19ref|XM_948911.1| Theileria annulata strain Ankara hypothetical p... 42 2.5
20emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chro... 42 2.5
21gb|AC105918.5| Homo sapiens BAC clone RP11-395M19 from 4, comple... 42 2.5
22emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in... 42 2.5
23dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 2.5
24gb|AC027016.4|AC027016 Homo sapiens chromosome 11, clone RP11-43... 42 2.5
25emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C ... 42 2.5
26emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D ... 42 2.5
27emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 i... 42 2.5
28emb|AL953866.5| Zebrafish DNA sequence from clone DKEY-60I9 in l... 42 2.5
29emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chr... 42 2.5 
>ref|XM_482519.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1454

 Score =  418 bits (211), Expect = e-113
 Identities = 421/491 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 284
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1192 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1133

                                                                        
Query: 285  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 344
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1132 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1073

                                                                        
Query: 345  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 404
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1072 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 1013

                                                                        
Query: 405  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 464
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 1012 tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 953

                                                                        
Query: 465  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 524
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 952  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 893

                                                                        
Query: 525  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 584
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 892  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 833

                                                                        
Query: 585  cccagctggccatattcattattaccccatgcccacaagattctgtctactgacagtgcc 644
            ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  || |||
Sbjct: 832  cccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgttagagcc 773

                                                                        
Query: 645  aaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcacacgtact 704
            |||||||||||||| |||||||||||||   | || | |||||| |||||||| || |||
Sbjct: 772  aaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacccgcact 713

                       
Query: 705  ggcgtagatat 715
            || ||||||||
Sbjct: 712  ggtgtagatat 702
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>ref|XM_507237.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1124_B05.9 mRNA
          Length = 1643

 Score =  418 bits (211), Expect = e-113
 Identities = 421/491 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 284
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1145 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1086

                                                                        
Query: 285  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 344
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1085 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1026

                                                                        
Query: 345  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 404
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1025 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 966

                                                                        
Query: 405  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 464
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 965  tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 906

                                                                        
Query: 465  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 524
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 905  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 846

                                                                        
Query: 525  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 584
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 845  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 786

                                                                        
Query: 585  cccagctggccatattcattattaccccatgcccacaagattctgtctactgacagtgcc 644
            ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  || |||
Sbjct: 785  cccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgttagagcc 726

                                                                        
Query: 645  aaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcacacgtact 704
            |||||||||||||| |||||||||||||   | || | |||||| |||||||| || |||
Sbjct: 725  aaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacccgcact 666

                       
Query: 705  ggcgtagatat 715
            || ||||||||
Sbjct: 665  ggtgtagatat 655
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>dbj|AK101681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058K22, full
            insert sequence
          Length = 1643

 Score =  418 bits (211), Expect = e-113
 Identities = 421/491 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 284
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1145 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1086

                                                                        
Query: 285  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 344
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1085 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1026

                                                                        
Query: 345  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 404
            |||||||||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1025 ccacatgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 966

                                                                        
Query: 405  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 464
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 965  tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 906

                                                                        
Query: 465  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 524
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 905  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 846

                                                                        
Query: 525  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 584
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 845  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 786

                                                                        
Query: 585  cccagctggccatattcattattaccccatgcccacaagattctgtctactgacagtgcc 644
            ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  || |||
Sbjct: 785  cccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgttagagcc 726

                                                                        
Query: 645  aaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcacacgtact 704
            |||||||||||||| |||||||||||||   | || | |||||| |||||||| || |||
Sbjct: 725  aaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacccgcact 666

                       
Query: 705  ggcgtagatat 715
            || ||||||||
Sbjct: 665  ggtgtagatat 655
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>dbj|AK102785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107K23, full
            insert sequence
          Length = 1454

 Score =  410 bits (207), Expect = e-111
 Identities = 420/491 (85%)
 Strand = Plus / Minus

                                                                        
Query: 225  atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatga 284
            ||||| |||||||| ||||| ||||| || |||||||| |||| ||| ||||||||||| 
Sbjct: 1192 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatgg 1133

                                                                        
Query: 285  tcgcccctcccgtaagagaatatccggccgtcactggttagcacaactgaatgggtccct 344
            || || || |||||||| || || || || ||||  |||||| ||||||||||||| |||
Sbjct: 1132 tcacctctaccgtaagaaaacattcgtccatcacgagttagcgcaactgaatgggttcct 1073

                                                                        
Query: 345  ccacatgatacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatg 404
            ||||| |||||||||| ||||||||||||||| ||||||| ||||| | | || ||||||
Sbjct: 1072 ccacacgatacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatg 1013

                                                                        
Query: 405  tggctgctcttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatat 464
            || || || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| 
Sbjct: 1012 tgactacttttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatac 953

                                                                        
Query: 465  acctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaaccaat 524
            |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 952  acctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaaccaat 893

                                                                        
Query: 525  gaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatctccaatc 584
            ||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||||| | 
Sbjct: 892  gaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatctccagtg 833

                                                                        
Query: 585  cccagctggccatattcattattaccccatgcccacaagattctgtctactgacagtgcc 644
            ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  || |||
Sbjct: 832  cccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgttagagcc 773

                                                                        
Query: 645  aaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcacacgtact 704
            |||||||||||||| |||||||||||||   | || | |||||| |||||||| || |||
Sbjct: 772  aaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacccgcact 713

                       
Query: 705  ggcgtagatat 715
            || ||||||||
Sbjct: 712  ggtgtagatat 702
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>gb|AY109250.1| Zea mays PCO087848 mRNA sequence
          Length = 677

 Score =  212 bits (107), Expect = 1e-51
 Identities = 182/207 (87%)
 Strand = Plus / Minus

                                                                       
Query: 213 ggcggcaagtttatgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcct 272
           ||||||| ||| ||||||| |||||| ||||| ||||| ||||||||||| |||| ||||
Sbjct: 218 ggcggcaggttgatgggcaattccatggggtggcccgtcgtcaccttcctgccgtagcct 159

                                                                       
Query: 273 agacggccatgatcgcccctcccgtaagagaatatccggccgtcactggttagcacaact 332
           ||||||||||| ||||||||||||||||| || || ||||| || |  | |||| |||||
Sbjct: 158 agacggccatggtcgcccctcccgtaagaaaacattcggccatctcgagctagcgcaact 99

                                                                       
Query: 333 gaatgggtccctccacatgatacctgaacaatatcctctccagctagaagctgaacctgt 392
           ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 98  gaatgtgttcctccacatgatacctgaacaatatcctctccagctagaagctcaaccttt 39

                                      
Query: 393 agtggcaccatgtggctgctcttatca 419
           || ||||||||||| || |||||||||
Sbjct: 38  aggggcaccatgtgactactcttatca 12
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  153 bits (77), Expect = 1e-33
 Identities = 167/197 (84%)
 Strand = Plus / Plus

                                                                            
Query: 519      accaatgaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatct 578
                ||||||||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 20815729 accaatgaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatct 20815788

                                                                            
Query: 579      ccaatccccagctggccatattcattattaccccatgcccacaagattctgtctactgac 638
                ||| | ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  
Sbjct: 20815789 ccagtgcccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgtt 20815848

                                                                            
Query: 639      agtgccaaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcaca 698
                || ||||||||||||||||| |||||||||||||   | || | |||||| |||||||| 
Sbjct: 20815849 agagccaaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacc 20815908

                                 
Query: 699      cgtactggcgtagatat 715
                || ||||| ||||||||
Sbjct: 20815909 cgcactggtgtagatat 20815925



 Score =  103 bits (52), Expect = 8e-19
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                            
Query: 353      tacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatgtggctgct 412
                |||||||| ||||||||||||||| ||||||| ||||| | | || |||||||| || ||
Sbjct: 20815044 tacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatgtgactact 20815103

                                                                        
Query: 413      cttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 468
                 |||||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 20815104 tttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatacacct 20815159



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                           
Query: 463      atacctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaacc 521
                |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 20815287 atacctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaacc 20815345



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 321      gttagcacaactgaatgggtccctccacatgatacctg 358
                |||||| ||||||||||||| |||||||||||||||||
Sbjct: 20814931 gttagcgcaactgaatgggttcctccacatgatacctg 20814968



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                           
Query: 225      atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatg 283
                ||||| |||||||| ||||| ||||| || |||||||| |||| ||| |||||||||||
Sbjct: 20814195 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatg 20814253
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>dbj|AP003881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1124_B05
          Length = 109917

 Score =  153 bits (77), Expect = 1e-33
 Identities = 167/197 (84%)
 Strand = Plus / Plus

                                                                         
Query: 519   accaatgaaaggttagatagcccttcaacacggattggttgtgatctcggttgggtatct 578
             ||||||||||||| |||||  |||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 46862 accaatgaaaggtcagataatccttcaacacggattggttgcgatcttggttgagtatct 46921

                                                                         
Query: 579   ccaatccccagctggccatattcattattaccccatgcccacaagattctgtctactgac 638
             ||| | ||||| || ||||| ||||| ||||||||||||||||| ||||  ||| |||  
Sbjct: 46922 ccagtgcccagttgaccatactcattgttaccccatgcccacaaaattccatcttctgtt 46981

                                                                         
Query: 639   agtgccaaattatggaatgcccctacagcaatcatgctcacttgctcaagcccttgcaca 698
             || ||||||||||||||||| |||||||||||||   | || | |||||| |||||||| 
Sbjct: 46982 agagccaaattatggaatgcacctacagcaatcacctttacattctcaaggccttgcacc 47041

                              
Query: 699   cgtactggcgtagatat 715
             || ||||| ||||||||
Sbjct: 47042 cgcactggtgtagatat 47058



 Score =  103 bits (52), Expect = 8e-19
 Identities = 100/116 (86%)
 Strand = Plus / Plus

                                                                         
Query: 353   tacctgaacaatatcctctccagctagaagctgaacctgtagtggcaccatgtggctgct 412
             |||||||| ||||||||||||||| ||||||| ||||| | | || |||||||| || ||
Sbjct: 46177 tacctgaataatatcctctccagcaagaagctcaaccttttggggaaccatgtgactact 46236

                                                                     
Query: 413   cttatcatccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 468
              |||||||| ||||| || ||||||||||| |||||||| ||||||||||| ||||
Sbjct: 46237 tttatcatctccaaatccaagcctcccatgctctcctctcccccaagcatacacct 46292



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 56/59 (94%)
 Strand = Plus / Plus

                                                                        
Query: 463   atacctctccttctttagttaatgcggctgaatgccaacctccagcagcaatgtcaacc 521
             |||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 46420 atacctctccctctttagttaatgcagttgaatgccaacctccagcagcaatgtcaacc 46478



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 321   gttagcacaactgaatgggtccctccacatgatacctg 358
             |||||| ||||||||||||| |||||||||||||||||
Sbjct: 46064 gttagcgcaactgaatgggttcctccacatgatacctg 46101



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                        
Query: 225   atgggcacttccattgggtgacccgtagtcaccttcctaccgtcgcctagacggccatg 283
             ||||| |||||||| ||||| ||||| || |||||||| |||| ||| |||||||||||
Sbjct: 45328 atggggacttccatcgggtggcccgtcgtgaccttcctgccgtagcccagacggccatg 45386
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>ref|NM_121609.2| Arabidopsis thaliana Ran GTPase binding / chromatin binding
           AT5G16040 mRNA, complete cds
          Length = 1745

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 423 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 482
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 867 ccaaacccgagccttccatgctctcctcttccccaaccataaacctctccttcattggtt 808

                                                    
Query: 483 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 523
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 807 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 767



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 561 gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgcccac 620
           ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||||
Sbjct: 729 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagcccac 670

             
Query: 621 aa 622
           ||
Sbjct: 669 aa 668
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>emb|BX830402.1|CNS0A1C5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB78ZE02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1348

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 423 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 482
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 849 ccaaacccgagccttccatgctctcctcttccccaaccataaacctctccttcattggtt 790

                                                    
Query: 483 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 523
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 789 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 749



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 594 ccatattcattattaccccatgcccacaa 622
           |||||||||||| ||||||| ||||||||
Sbjct: 676 ccatattcattactaccccaagcccacaa 648
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>gb|AY085145.1| Arabidopsis thaliana clone 13316 mRNA, complete sequence
          Length = 1389

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 86/101 (85%)
 Strand = Plus / Minus

                                                                       
Query: 423 ccaaagccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagtt 482
           ||||| |||||||| ||||| ||||||||||||||| |||| ||||||||||| || |||
Sbjct: 867 ccaaacccgagccttccatgctctcctcttccccaaccatacacctctccttcattggtt 808

                                                    
Query: 483 aatgcggctgaatgccaacctccagcagcaatgtcaaccaa 523
           || || | ||||||||| || || ||||| || ||||||||
Sbjct: 807 aaagctgttgaatgccatccacccgcagcgatatcaaccaa 767



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 561 gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgcccac 620
           ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||||
Sbjct: 729 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagcccac 670

             
Query: 621 aa 622
           ||
Sbjct: 669 aa 668
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>ref|NM_111118.3| Arabidopsis thaliana Ran GTPase binding / chromatin binding AT3G02510
            transcript variant AT3G02510.1 mRNA, complete cds
          Length = 1554

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 158/199 (79%), Gaps = 3/199 (1%)
 Strand = Plus / Minus

                                                                        
Query: 328  caactgaatgggtccctccacatgatacctgaacaatatcctctccagctagaagctgaa 387
            |||||||||| || || ||||| || |||||||  ||||| ||| |||||||||| | ||
Sbjct: 1026 caactgaatgtgttccgccacaagaaacctgaattatatcttcttcagctagaagattaa 967

                                                                        
Query: 388  cctgtagtggcaccatgtggctgctcttatcat---ccccaaagccgagcctcccatgtt 444
            | |   |||| ||||| | ||||||||| ||||   | ||||  ||||| || |||||||
Sbjct: 966  ctttctgtggaaccattttgctgctcttgtcattgtcaccaagcccgagtcttccatgtt 907

                                                                        
Query: 445  ctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgccaacctc 504
            |||||||||||||| |||| ||||||||||  | |||||  || | ||||||||| || |
Sbjct: 906  ctcctcttccccaaccatacacctctcctttatcagttagagccgttgaatgccatccac 847

                               
Query: 505  cagcagcaatgtcaaccaa 523
            | |||||||| || |||||
Sbjct: 846  ccgcagcaatatcgaccaa 828
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>ref|NM_001035546.1| Arabidopsis thaliana Ran GTPase binding / chromatin binding
           AT3G02510 transcript variant AT3G02510.2 mRNA, complete
           cds
          Length = 1727

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 429 ccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagttaatgcg 488
           ||||| || ||||||||||||||||||||| |||| ||||||||||  | |||||  || 
Sbjct: 937 ccgagtcttccatgttctcctcttccccaaccatacacctctcctttatcagttagagcc 878

                                              
Query: 489 gctgaatgccaacctccagcagcaatgtcaaccaa 523
           | ||||||||| || || |||||||| || |||||
Sbjct: 877 gttgaatgccatccacccgcagcaatatcgaccaa 843
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>emb|BX823346.1|CNS0A6KE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS25ZD09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1445

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 429 ccgagcctcccatgttctcctcttccccaagcatatacctctccttctttagttaatgcg 488
           ||||| || ||||||||||||||||||||| |||| ||||||||||  | |||||  || 
Sbjct: 843 ccgagtcttccatgttctcctcttccccaaccatacacctctcctttatcagttagagcc 784

                                              
Query: 489 gctgaatgccaacctccagcagcaatgtcaaccaa 523
           | ||||||||| || || |||||||| || |||||
Sbjct: 783 gttgaatgccatccacccgcagcaatatcgaccaa 749
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>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project)
          Length = 74687

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                         
Query: 561   gatctcggttgggtatctccaatccccagctggccatattcattattaccccatgcccac 620
             ||||||||||| || |||||| | || || || |||||||||||||||||||| ||||||
Sbjct: 60476 gatctcggttgtgtgtctccagttccaagttgtccatattcattattaccccaagcccac 60535

               
Query: 621   aa 622
             ||
Sbjct: 60536 aa 60537



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 423   ccaaagccgagcctcccatgttctcctcttccccaagcatatacct 468
             ||||| |||||||| ||||| ||||||||||||||| |||| ||||
Sbjct: 60077 ccaaacccgagccttccatgctctcctcttccccaaccataaacct 60122
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>emb|BX824696.1|CNS0A6SX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZB02 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1457

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 438 ccatgttctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgc 497
           ||||||||||||||||||||| |||| ||||||||||  | |||||  || | |||||||
Sbjct: 913 ccatgttctcctcttccccaaccatacacctctcctttatcagttagagccgttgaatgc 854

                                     
Query: 498 caacctccagcagcaatgtcaaccaa 523
           || || || |||||||| || |||||
Sbjct: 853 catccacccgcagcaatatcgaccaa 828
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>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence
          Length = 141360

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                               
Query: 420    tccccaaagccgagcctcccatgttctcctcttccccaagcatatacct 468
              |||||||| ||||||||||||||||| ||||| |||||| |||| ||||
Sbjct: 125400 tccccaaacccgagcctcccatgttcccctctcccccaaccatacacct 125448



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                          
Query: 552    attggttgtgatctcggttgggtatctccaatccccagctggccatattcattattaccc 611
              ||||| || ||||| |||||||| |||||  | || || || |||||||| ||||| |||
Sbjct: 126028 attggctgggatcttggttgggtgtctcccgttccaagttgtccatattcgttattgccc 126087

                         
Query: 612    catgcccacaa 622
              |||||||||||
Sbjct: 126088 catgcccacaa 126098



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 495    tgccaacctccagcagcaatgtcaacc 521
              ||||| |||||||||||||||||||||
Sbjct: 125885 tgccatcctccagcagcaatgtcaacc 125911
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>emb|BX822851.1|CNS0A7AJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB69ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1333

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 438 ccatgttctcctcttccccaagcatatacctctccttctttagttaatgcggctgaatgc 497
           ||||||||||||||||||||| |||| |||||| |||  | |||||  || | |||||||
Sbjct: 867 ccatgttctcctcttccccaaccatacacctcttctttatcagttagagccgttgaatgc 808

                                     
Query: 498 caacctccagcagcaatgtcaaccaa 523
           || || || |||||||| || |||||
Sbjct: 807 catccacccgcagcaatatcgaccaa 782
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>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 429   ccgagcctcccatgttctcctcttccccaagcatatacct 468
             ||||| || ||||||||||||||||||||| |||| ||||
Sbjct: 38256 ccgagtcttccatgttctcctcttccccaaccatacacct 38295
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>ref|XM_948911.1| Theileria annulata strain Ankara hypothetical protein (TA06955)
           partial mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 196 tggtgctggtctttggtggcg 216
           |||||||||||||||||||||
Sbjct: 317 tggtgctggtctttggtggcg 297
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>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the
             Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a
             peroxiredoxin 6 (Prdx6) pseudogene, a novel gene
             (1700086D15Rik), a novel pseudogene, and two CpG islands,
             complete sequence
          Length = 196566

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 191   ggagctggtgctggtctttggtggc 215
             |||||||||||||||| ||||||||
Sbjct: 58151 ggagctggtgctggtcattggtggc 58175
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>gb|AC105918.5| Homo sapiens BAC clone RP11-395M19 from 4, complete sequence
          Length = 53838

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 382   gctgaacctgtagtggcacca 402
             |||||||||||||||||||||
Sbjct: 44111 gctgaacctgtagtggcacca 44131
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>emb|BX569800.8| Zebrafish DNA sequence from clone DKEY-106C24 in linkage group 21,
             complete sequence
          Length = 188915

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    cacaatttcatttcatacact 96
             |||||||||||||||||||||
Sbjct: 97255 cacaatttcatttcatacact 97235
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     actgttaccacaatttcattt 88
              |||||||||||||||||||||
Sbjct: 983135 actgttaccacaatttcattt 983155
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>gb|AC027016.4|AC027016 Homo sapiens chromosome 11, clone RP11-439M19, complete sequence
          Length = 165843

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 573   gtatctccaatccccagctgg 593
             |||||||||||||||||||||
Sbjct: 71611 gtatctccaatccccagctgg 71631
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>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 591    tggccatattcattattaccccatgccca 619
              ||||||||||| ||||| |||||||||||
Sbjct: 714982 tggccatattcgttatttccccatgccca 714954
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>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5)
          Length = 896449

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 585    cccagctggccatattcattattaccccatgcccaca 621
              ||||| ||||||||| ||||||  |||||||||||||
Sbjct: 163946 cccagttggccatatccattatatccccatgcccaca 163910
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>emb|BX294167.5| Zebrafish DNA sequence from clone CH211-244O18 in linkage group 5,
             complete sequence
          Length = 191302

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 669   atcatgctcacttgctcaagc 689
             |||||||||||||||||||||
Sbjct: 74312 atcatgctcacttgctcaagc 74332
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>emb|AL953866.5| Zebrafish DNA sequence from clone DKEY-60I9 in linkage group 21,
             complete sequence
          Length = 198925

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    cacaatttcatttcatacact 96
             |||||||||||||||||||||
Sbjct: 87939 cacaatttcatttcatacact 87919
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>emb|AL603864.8| Mouse DNA sequence from clone RP23-478N15 on chromosome 15, complete
              sequence
          Length = 178412

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 448    ctcttccccaagcatatacct 468
              |||||||||||||||||||||
Sbjct: 157200 ctcttccccaagcatatacct 157220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,826,809
Number of Sequences: 3902068
Number of extensions: 5826809
Number of successful extensions: 103727
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103612
Number of HSP's gapped (non-prelim): 115
length of query: 731
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 708
effective length of database: 17,143,297,704
effective search space: 12137454774432
effective search space used: 12137454774432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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