ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo04 |
|---|---|
| Clone Library Name | barley_pub |
>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein| 2) (AtFBL2) (COI-1) (AtCOI1) Length = 592 Score = 230 bits (587), Expect = 3e-60 Identities = 111/178 (62%), Positives = 138/178 (77%), Gaps = 4/178 (2%) Frame = -2 Query: 739 LDRQERITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGN 560 LDR+ERITDLPLDNG R+LL GC KLRRFA YLR GGL+D+GL+YIGQ+S + +MLLG Sbjct: 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 Query: 559 VGQTDDGLISFAAGCRNLLKLELRSCCFSERALALAVLKMPSLRYVWVQGYRASQTGRDL 380 VG++D+GL+ F+ GC NL KLE+R CCFSERA+A AV K+PSLRY+WVQGYRAS TG+DL Sbjct: 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 Query: 379 MLMARPFWNIEFTP----PGTESAGRLMEDGEPCVDRQAQVLAYYSLSGRRSDCPQSV 218 M MARP+WNIE P P G + E ++ A +LAYYSL+G+R+DCP +V Sbjct: 533 MQMARPYWNIELIPSRRVPEVNQQGEIRE-----MEHPAHILAYYSLAGQRTDCPTTV 585
>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat| protein 1) Length = 594 Score = 67.0 bits (162), Expect = 6e-11 Identities = 47/161 (29%), Positives = 74/161 (45%) Frame = -2 Query: 709 PLDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQTDDGLIS 530 PLD G A++ C LRR +L G L+D YIG ++ + + + G +D G+ Sbjct: 419 PLDIGFGAIVEHCKDLRRLSL---SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 Query: 529 FAAGCRNLLKLELRSCCFSERALALAVLKMPSLRYVWVQGYRASQTGRDLMLMARPFWNI 350 +GC +L KLE+R C F ++AL K+ ++R +W+ S L+ P N+ Sbjct: 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 Query: 349 EFTPPGTESAGRLMEDGEPCVDRQAQVLAYYSLSGRRSDCP 227 E R D P +V Y +++G R D P Sbjct: 536 EVIDE------RGAPDSRPESCPVERVFIYRTVAGPRFDMP 570
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 40.4 bits (93), Expect = 0.006 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 700 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 526 AAGCRNLLKLELRSC 482 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 40.4 bits (93), Expect = 0.006 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 700 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 526 AAGCRNLLKLELRSC 482 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 40.4 bits (93), Expect = 0.006 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = -2 Query: 700 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 526 AAGCRNLLKLELRSC 482 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 38.1 bits (87), Expect = 0.029 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Frame = -2 Query: 697 GARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISFA 524 G AL+RGC L+ AL LR L D L +I H + + L + + TDDG++ Sbjct: 173 GIEALVRGCRGLK--ALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQIC 230 Query: 523 AGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQGYRASQ-TGRDLMLMARPFWNI 350 GC L L L C ++ +L L P L+ ++ R S T L+AR + Sbjct: 231 RGCHRLQALCLSGCSNLTDASLTALGLNCPRLQV--LEAARCSHLTDAGFTLLARNCHEL 288 Query: 349 E 347 E Sbjct: 289 E 289
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 36.6 bits (83), Expect = 0.084 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Frame = -2 Query: 724 RITDLPLDNGARALLRGCTKLRRFALYLRPGG---LSDVGLNYIGQHSGTIHYMLLGNVG 554 R+TD+ G R + + C+KLR YL G ++D G+ Y+ ++ + + +G Sbjct: 362 RVTDV----GIRYVAKYCSKLR----YLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCP 413 Query: 553 QTDD-GLISFAAGCRNLLKLELRSC 482 D GL A C NL +L L+SC Sbjct: 414 LVSDTGLECLALNCFNLKRLSLKSC 438
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7| Length = 466 Score = 35.4 bits (80), Expect = 0.19 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = -2 Query: 724 RITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYM-LLGNVGQT 548 ++TD+ + N + G T L + +SD L +GQHS + + L G Sbjct: 265 QLTDITVQN----IANGATALEYLCMS-NCNQISDRSLVSLGQHSHNLKVLELSGCTLLG 319 Query: 547 DDGLISFAAGCRNLLKLELRSC 482 D+G I A GCR L +L++ C Sbjct: 320 DNGFIPLARGCRQLERLDMEDC 341
>FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 370 Score = 35.0 bits (79), Expect = 0.24 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = -2 Query: 703 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 DNG L C L R+ Y R LSD + + H + + +GN + TD+GL Sbjct: 70 DNGVCVLAFKCPGLLRYTAY-RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQL 128 Query: 526 AAGCRNLLKLELRSC 482 + CR L + C Sbjct: 129 GSKCRELKDIHFGQC 143
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 34.7 bits (78), Expect = 0.32 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Frame = -2 Query: 700 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 +G AL+RGC L+ AL LR L D L +I + + + L + + TD+G++ Sbjct: 172 DGIEALVRGCRGLK--ALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQI 229 Query: 526 AAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQGYRASQ-TGRDLMLMARPFWN 353 GC L L L C ++ +L L P L+ ++ R S T L+AR Sbjct: 230 CRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI--LEAARCSHLTDAGFTLLARNCHE 287 Query: 352 IE 347 +E Sbjct: 288 LE 289 Score = 31.2 bits (69), Expect = 3.5 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = -2 Query: 703 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 D+ +L R C+KL+ L +++ L I + + Y+ L Q T DG+ + Sbjct: 119 DSTCYSLSRFCSKLKHLDL-TSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEAL 177 Query: 526 AAGCRNLLKLELRSC 482 GCR L L LR C Sbjct: 178 VRGCRGLKALLLRGC 192
>FXL17_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 462 Score = 33.5 bits (75), Expect = 0.71 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Frame = -2 Query: 703 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 527 D+G L C L R+ Y R LSD + + H + + +GN + TD+GL Sbjct: 162 DSGVCVLAFKCPGLLRYTAY-RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQL 220 Query: 526 AAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQ 413 + CR L + C S+ + + L+ +++Q Sbjct: 221 GSRCRELKDIHFGQCYKISDEGMIVIAKSCLKLQRIYMQ 259
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 32.7 bits (73), Expect = 1.2 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = +1 Query: 256 SSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFERLCSPAPIRTSE 435 S +Q P YQ +PH P+ P S ++A Q R G ERL PA +RTSE Sbjct: 311 SRLQRPVHLYQS-SPHTPNFRPSSIRKDALLQTGPRL-------GHLERLGQPANLRTSE 362 Query: 436 KAFSVRR 456 ++ +R Sbjct: 363 RSPPTKR 369
>POLS_MOUSE (Q6PB75) DNA polymerase sigma (EC 2.7.7.7)| Length = 542 Score = 32.7 bits (73), Expect = 1.2 Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 21/138 (15%) Frame = +2 Query: 101 SIQYPHTNISLLPKKGP-GATPSQTCASFVYVQSRRIQRNNRLRAVRPPPTKGVV---CK 268 S+Q P T ++ LP P ++ Q AS + + NN+ R PPPT GV C+ Sbjct: 386 SLQAPTTLMASLPTALPMPSSKPQPAASRTLIMTT----NNQTRVTIPPPTLGVAPVPCR 441 Query: 269 YLSLPINTGLPIFHQPTRAL-----------------RAGRRKLNVPEGPCHEHEVAASL 397 + T L H T + KL++ H S Sbjct: 442 QAGVDGTTSLKAVHSVTSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGSHNHTQGGGYSS 501 Query: 398 RGSVALHPYVPQRRHFQY 451 GS A+ P V R H QY Sbjct: 502 VGSGAVRPPVGNRGHHQY 519
>UREE_ACTPL (O54422) Urease accessory protein ureE| Length = 187 Score = 31.6 bits (70), Expect = 2.7 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = -1 Query: 479 LQRAGFGPRRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRW 300 LQ AGFGP++ E R+ L++ S H+HG H HG DG W Sbjct: 135 LQAAGFGPQKAER-----RLSQALRANSAQGHGHSHG-----HSHSHDHHGYHHHGDGNW 184
>MURC_DESVH (P61678) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 454 Score = 30.4 bits (67), Expect = 6.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -2 Query: 703 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHS 590 DN RA + C + F ++LR G L +V L G+H+ Sbjct: 240 DNALRAEVTSCAETSVFTVFLRGGRLGEVHLGQPGRHN 277
>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29| (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9) Length = 223 Score = 30.4 bits (67), Expect = 6.0 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Frame = -2 Query: 733 RQERITDLP--LDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGN 560 RQ ++ LP DNG A+ RGC L AL LSD G + ++ L + Sbjct: 103 RQLSLSLLPELTDNGLVAVARGCPSLEHLAL-SHCSRLSDKGWAQAASSWPRLQHLNLSS 161 Query: 559 VGQ-TDDGLISFAAGCRNLLKLELRSC 482 Q + L + CR L L++ +C Sbjct: 162 CSQLIEQTLDAIGQACRQLRVLDVATC 188 Score = 30.0 bits (66), Expect = 7.9 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -2 Query: 550 TDDGLISFAAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYV 422 TD+GL++ A GC +L L L C S++ A A P L+++ Sbjct: 114 TDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHL 157
>DHE4_GIBFU (Q96VJ7) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 451 Score = 30.0 bits (66), Expect = 7.9 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -1 Query: 455 RRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRWGAL 291 R+ N + V G GL + RP A G L+ + Y +H RG+ +G+ AL Sbjct: 170 RKFANRWEGVLTGKGLSWGGSLIRPEATGYGLVYYVEYMLKHANRGTFEGKRVAL 224
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 30.0 bits (66), Expect = 7.9 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = +1 Query: 223 TAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFER 402 TA PT S +Q P +Q PH P P ++A Q R G ER Sbjct: 302 TASRPTGPP--SRLQRPVHLHQS-GPHTPDFRPSGIRKDAFLQTGPRL-------GHLER 351 Query: 403 LCSPAPIRTSEKAFSV-RRGPKP 468 L A +RTSE+ S RR P+P Sbjct: 352 LGQSADLRTSERTPSTKRRLPRP 374
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)| Length = 3005 Score = 30.0 bits (66), Expect = 7.9 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 190 CTVTQDTEEQQTAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPC 333 C + + QQ + SP+SSH S +P+L Q + P RSPC Sbjct: 442 CKTCELLDIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPH---RSPC 486 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 119,712,224 Number of Sequences: 219361 Number of extensions: 2820998 Number of successful extensions: 6900 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6887 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7762912789 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
