Clone Name | rbasdo04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 355 bits (179), Expect = 1e-94 Identities = 452/543 (83%) Strand = Plus / Minus Query: 187 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 37502 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 37443 Query: 247 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 37442 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 37383 Query: 307 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366 | ||| ||| || |||| | | |||||| |||||||| |||||||||||||||| Sbjct: 37382 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 37323 Query: 367 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 37322 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 37263 Query: 427 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 37262 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 37203 Query: 487 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 37202 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 37143 Query: 547 ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606 | |||| |||||| ||||||||||||||||| |||||| ||||||||| ||||||||||| Sbjct: 37142 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 37083 Query: 607 agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666 || |||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| Sbjct: 37082 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 37023 Query: 667 tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726 | ||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||| Sbjct: 37022 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 36963 Query: 727 ctt 729 ||| Sbjct: 36962 ctt 36960 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 37702 ttagtatacatcttcctaggatt 37680
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 355 bits (179), Expect = 1e-94 Identities = 452/543 (83%) Strand = Plus / Minus Query: 187 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 21918288 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 21918229 Query: 247 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 21918228 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 21918169 Query: 307 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366 | ||| ||| || |||| | | |||||| |||||||| |||||||||||||||| Sbjct: 21918168 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 21918109 Query: 367 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 21918108 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 21918049 Query: 427 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 21918048 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 21917989 Query: 487 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 21917988 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 21917929 Query: 547 ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606 | |||| |||||| ||||||||||||||||| |||||| ||||||||| ||||||||||| Sbjct: 21917928 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 21917869 Query: 607 agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666 || |||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| Sbjct: 21917868 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 21917809 Query: 667 tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726 | ||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||| Sbjct: 21917808 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 21917749 Query: 727 ctt 729 ||| Sbjct: 21917748 ctt 21917746 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 21918488 ttagtatacatcttcctaggatt 21918466
>dbj|AK101514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F05, full insert sequence Length = 2305 Score = 347 bits (175), Expect = 3e-92 Identities = 451/543 (83%) Strand = Plus / Minus Query: 187 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246 |||| ||||||||||||||||||| |||||| ||||| | ||||||||||||||| ||| Sbjct: 2018 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 1959 Query: 247 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306 | |||||||||||||||||||| ||||||||| ||||| ||||| || || ||||||| Sbjct: 1958 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 1899 Query: 307 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366 | ||| ||| || |||| | | |||||| |||||||| |||||||||||| ||| Sbjct: 1898 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagcgcc 1839 Query: 367 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426 | |||||||||||||| ||| | ||||| | ||| || |||||||||| ||||| |||| Sbjct: 1838 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 1779 Query: 427 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486 | ||||| |||||||| || ||| ||| |||| ||||| |||| |||||||| || | Sbjct: 1778 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 1719 Query: 487 tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546 |||||| ||||||||| |||||||| ||||| |||||| | ||| | || |||| Sbjct: 1718 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 1659 Query: 547 ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606 | |||| |||||| ||||||||||||||||| |||||| ||||||||| ||||||||||| Sbjct: 1658 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 1599 Query: 607 agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666 || |||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| Sbjct: 1598 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 1539 Query: 667 tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726 | ||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||| Sbjct: 1538 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 1479 Query: 727 ctt 729 ||| Sbjct: 1478 ctt 1476 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 2218 ttagtatacatcttcctaggatt 2196
>gb|AY109490.1| Zea mays CL920_1 mRNA sequence Length = 2298 Score = 331 bits (167), Expect = 2e-87 Identities = 464/563 (82%) Strand = Plus / Minus Query: 177 ccagctttgtgtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtcc 236 ||||||| || ||| |||| |||||||||||||| |||||| || || || ||||||||| Sbjct: 2024 ccagcttagtctatttacactcacgcaggatacaaaggaaccacggattgtgggcagtcc 1965 Query: 237 gacctcctcccactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggc 296 |||| | || ||||||| ||||||||||| |||||| || ||||| ||||| ||| Sbjct: 1964 agcctcttaccggcgagggagtggtatgcaagtatctgagcgtgactatctacacaaggc 1905 Query: 297 tccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttc 356 ||||||||||||||||||| ||| || ||| | |||||| |||||||| |||||| Sbjct: 1904 tccccatcttccatcagccaacctccgttcttaggattgggaggtgtaaactctatgttc 1845 Query: 357 cagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgc 416 ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||| Sbjct: 1844 cagaagggccttgccatgagcatgaggtctcggccggtttgagacgctttgtagccctga 1785 Query: 417 acccatacgtacctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctg 476 ||||||||||||||||| |||||||| | |||| || ||||||| || ||||||||| Sbjct: 1784 acccatacgtacctcagggaaggcatatgtagtattgcaagggccagtgctcgctcgctg 1725 Query: 477 aagcagcagctccttaattcaagcttcagcaggttccggcacccagctgcaaaactgatt 536 |||||||| ||||| | ||||||||| ||||||| ||| || ||| || ||||| Sbjct: 1724 aagcagcaactcctgagttcaagctttcgcaggtttacgcaacccaatgcgaagctgatc 1665 Query: 537 aatccgtcatccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgc 596 ||||| ||||| |||| |||||| ||||| ||||||||||| ||||| |||| ||| | Sbjct: 1664 aatccatcatcagtttccccaacattaccgagaagcatgtactggatgtttccgctgcac 1605 Query: 597 tgtccaatatagttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaac 656 |||||||| ||| || || ||||||| || || |||||||||| ||| ||||| ||| Sbjct: 1604 tgtccaatgtagccgagacctgcatctgagagccctcctggtctcaagtacagagcaaac 1545 Query: 657 ctccgaagtttagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatct 716 |||||||| || ||||||||||||| || || ||| ||||||||||||||||||| ||| Sbjct: 1544 ctccgaagcttggtgcagcccctcaacaaagctcggacaccattgtccagtggcaagtct 1485 Query: 717 gttatcctctcttgtctgtcaag 739 ||||||||||||| ||| ||||| Sbjct: 1484 gttatcctctcttctctatcaag 1462
>ref|NM_190647.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1893 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 1454 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1395 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 1394 ccattgtcaagtggcagatctgtta 1370
>gb|AY168645.1| Oryza sativa (japonica cultivar-group) COI1 mRNA, complete cds Length = 2088 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1714 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1655 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1654 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1595 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1594 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1535 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1534 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1475 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 1474 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1415 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 1414 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1355 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 1354 ccattgtcaagtggcagatctgtta 1330 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 2061 ttagtatacatcttcctaggatt 2039
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 36743751 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 36743692 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 36743691 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 36743632 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 36743631 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 36743572 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 36743571 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 36743512 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 36743511 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 36743452 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 36743451 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 36743392 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 36743391 ccattgtcaagtggcagatctgtta 36743367 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 36744094 ttagtatacatcttcctaggatt 36744072
>gb|DQ028826.1| Oryza sativa (japonica cultivar-group) coronatine-insensitive 1 mRNA, complete cds Length = 1893 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 1454 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1395 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 1394 ccattgtcaagtggcagatctgtta 1370
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 70066 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 70007 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 70006 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 69947 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 69946 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 69887 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 69886 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 69827 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 69826 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 69767 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 69766 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 69707 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 69706 ccattgtcaagtggcagatctgtta 69682 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 70409 ttagtatacatcttcctaggatt 70387
>dbj|AK121543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A10, full insert sequence Length = 2163 Score = 216 bits (109), Expect = 8e-53 Identities = 316/385 (82%) Strand = Plus / Minus Query: 336 ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395 ||||| |||||||| ||||||||||| ||||| |||||||||| |||||| |||| ||| Sbjct: 1730 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1671 Query: 396 tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455 ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| ||| Sbjct: 1670 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1611 Query: 456 agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515 |||| |||||| |||||||||||||||||||| || |||||||||||| | ||||| | Sbjct: 1610 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1551 Query: 516 cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575 || || |||| |||| ||| ||||| | || | || ||||| || ||||| |||||| Sbjct: 1550 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1491 Query: 576 tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635 || |||||| ||||||||| |||||| || ||| ||||||| |||||||||| || ||| Sbjct: 1490 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1431 Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||| ||||| ||||| ||||||||||| || ||||| || | ||| |||| | || Sbjct: 1430 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1371 Query: 696 ccattgtccagtggcaaatctgtta 720 |||||||| ||||||| |||||||| Sbjct: 1370 ccattgtcaagtggcagatctgtta 1346 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ttagtatacatcttcctaggatt 34 ||||||||||||||||||||||| Sbjct: 2073 ttagtatacatcttcctaggatt 2051
>gb|AY111944.1| Zea mays CL896_2 mRNA sequence Length = 579 Score = 137 bits (69), Expect = 6e-29 Identities = 261/325 (80%) Strand = Plus / Minus Query: 187 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246 |||| |||||||||||||||| || || ||| | || |||| ||||||| |||||| | Sbjct: 367 gtatctacagtcacgcaggatgcaaagtaacgagccaccgcggacagtccggcctccttc 308 Query: 247 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306 || ||||| ||||| || || |||||||| || | || ||||| |||| ||||| Sbjct: 307 cagcgagggaatagtacgcgagaacctgagcatgggtgtcgacacaaggctgtccatccg 248 Query: 307 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366 |||||| ||||| ||||||||| | | ||||||| ||||| ||||||||| | |||| Sbjct: 247 ccatcacccgacacgcgctctcgggacggggaggcacgaactcgatgttccagtacggcc 188 Query: 367 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426 | ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 187 tggccatgagcatgaggtcccggcccgtctgagaggccctgtacccctgcacccatacgt 128 Query: 427 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486 ||||||| || ||||| | || ||||| | |||| |||||||||||||||||||||| Sbjct: 127 acctcagcgagggcatctggagcacggccaccgccagggcccgctcgctgaagcagcagc 68 Query: 487 tccttaattcaagcttcagcaggtt 511 ||| | || |||||| ||||||| Sbjct: 67 ccctcagctccagcttccgcaggtt 43
>gb|AY109565.1| Zea mays CL896_1 mRNA sequence Length = 2190 Score = 137 bits (69), Expect = 6e-29 Identities = 405/517 (78%) Strand = Plus / Minus Query: 223 actgcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcc 282 |||| |||||||||| |||||| ||| ||||||||| || ||||| ||||| || || Sbjct: 1934 actgagggcagtccggcctccttccagcaagggagtaatacgcaaggacctgggcatggg 1875 Query: 283 tatcaacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcg 342 | |||||||| |||| |||||| |||||| |||| |||||||| | |||||||| Sbjct: 1874 tgtcaacacaaggctgtccatctgccatcacccgataagcgctctcgggaatgggaggcg 1815 Query: 343 taaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagagg 402 || |||||||||||| | ||||| ||||||||||||||||| |||| ||| |||||| Sbjct: 1814 cgaattcaatgttccagtacggcctggccatgagcatgaggtcctggcccgttcgagagg 1755 Query: 403 ctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggcca 462 ||||||| ||||||||||||| ||||||||| || ||||| | || ||||| | |||| Sbjct: 1754 ctctgtacccctgcacccatatgtacctcagcgagggcatctggagcacggccactgcca 1695 Query: 463 aagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccggcacccag 522 ||| ||||||||||||||||||| ||| | || |||||| ||||||| ||| || | Sbjct: 1694 gagctcgctcgctgaagcagcagcccctcagctcgagcttccgcaggttggtgcatcccg 1635 Query: 523 ctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatgtagtgga 582 |||||| ||| ||||||| || | || |||||||| || || |||||||| |||| Sbjct: 1634 ttgcaaactggatcaatccgttgtcagattcaccaacgttgccgagcagcatgtattgga 1575 Query: 583 tagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccctggtctca 642 | | ||||||| ||||||| || ||||| || |||||||| || || ||||||| Sbjct: 1574 tgttcccactgtatagtccaatgtaaccgaggcctacgtctgaaagccctcccggtctca 1515 Query: 643 ggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggcaccattgt 702 |||| | || |||||||||||||| |||| |||||| || |||||| | || |||| Sbjct: 1514 ggtagaaggcaaacctccgaagtttgacgcagttcctcagtagggcacggacgccgttgt 1455 Query: 703 ccagtggcaaatctgttatcctctcttgtctgtcaag 739 | ||||||| ||||||||| ||| ||| ||||||| Sbjct: 1454 caagtggcaggtctgttatcttcttctgtttgtcaag 1418
>gb|BT019152.1| Zea mays clone Contig815.F mRNA sequence Length = 1411 Score = 131 bits (66), Expect = 4e-27 Identities = 231/286 (80%) Strand = Plus / Minus Query: 226 gcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcctat 285 |||| ||||||| |||||| ||| ||||| ||||| || || |||||||| || | | Sbjct: 1059 gcggacagtccggcctccttccagcgagggaatagtacgcgagaacctgagcatgggtgt 1000 Query: 286 caacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaa 345 | ||||| |||| ||||| |||||| ||||| ||||||||| | | ||||||| | Sbjct: 999 cgacacaaggctgtccatccgccatcacccgacacgcgctctcgggacggggaggcacga 940 Query: 346 actcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctc 405 |||| ||||||||| | ||||| ||||||||||||||||| ||||| || |||||||| | Sbjct: 939 actcgatgttccagtacggcctggccatgagcatgaggtcccggcccgtctgagaggccc 880 Query: 406 tgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggccaaag 465 |||| ||||||||||||||||||||||| || ||||| | || ||||| | |||| | Sbjct: 879 tgtacccctgcacccatacgtacctcagcgagggcatctggagcacggccaccgccaggg 820 Query: 466 cccgctcgctgaagcagcagctccttaattcaagcttcagcaggtt 511 ||||||||||||||||||||| ||| | || |||||| ||||||| Sbjct: 819 cccgctcgctgaagcagcagcccctcagctccagcttccgcaggtt 774 Score = 44.1 bits (22), Expect = 0.65 Identities = 70/86 (81%) Strand = Plus / Minus Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695 ||||||||||| | ||||||| |||||| || || |||| |||||| || || ||| || Sbjct: 649 ggtctcaggtacaaggcgaaccgccgaagcttggtacagctcctcagtagagctcggaca 590 Query: 696 ccattgtccagtggcaaatctgttat 721 || |||||||| |||| ||| ||||| Sbjct: 589 ccgttgtccagcggcagatccgttat 564
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 701 gtccagtggcaaatctgttatcctctcttgt 731 |||||||||||||||||||||| || ||||| Sbjct: 26915700 gtccagtggcaaatctgttatcatcacttgt 26915670
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 701 gtccagtggcaaatctgttatcctctcttgt 731 |||||||||||||||||||||| || ||||| Sbjct: 94700 gtccagtggcaaatctgttatcatcacttgt 94670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 701 gtccagtggcaaatctgttatcctctcttgt 731 |||||||||||||||||||||| || ||||| Sbjct: 27007023 gtccagtggcaaatctgttatcatcacttgt 27006993
>gb|AF536527.1| Glycine max putative coronatine-insensitive 1 (COI1) gene, partial cds Length = 711 Score = 44.1 bits (22), Expect = 0.65 Identities = 31/34 (91%) Strand = Plus / Minus Query: 696 ccattgtccagtggcaaatctgttatcctctctt 729 |||||||| ||||||||||| |||||| |||||| Sbjct: 203 ccattgtcaagtggcaaatcagttatcttctctt 170
>gb|BT009618.1| Triticum aestivum clone wre1n.pk0122.d3:fis, full insert mRNA sequence Length = 1074 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 taaactcaatgttccagaaggg 364 |||||||||||||||||||||| Sbjct: 539 taaactcaatgttccagaaggg 518
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 gccaaagcccgctcgctgaag 479 ||||||||||||||||||||| Sbjct: 1513162 gccaaagcccgctcgctgaag 1513142
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 gccaaagcccgctcgctgaag 479 ||||||||||||||||||||| Sbjct: 1348610 gccaaagcccgctcgctgaag 1348590
>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 198476 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 acagggctccccatcttccat 310 ||||||||||||||||||||| Sbjct: 96433 acagggctccccatcttccat 96453
>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence Length = 230020 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 acagggctccccatcttccat 310 ||||||||||||||||||||| Sbjct: 18199 acagggctccccatcttccat 18219
>emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on chromosome 4, complete sequence Length = 112610 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 catacaatacccacatacaaacata 127 ||||||| ||||||||||||||||| Sbjct: 106343 catacaacacccacatacaaacata 106367 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,447,164 Number of Sequences: 3902068 Number of extensions: 5447164 Number of successful extensions: 96398 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96175 Number of HSP's gapped (non-prelim): 218 length of query: 740 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 717 effective length of database: 17,143,297,704 effective search space: 12291744453768 effective search space used: 12291744453768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)