ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdo04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome... 355 1e-94
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 355 1e-94
3dbj|AK101514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 347 3e-92
4gb|AY109490.1| Zea mays CL920_1 mRNA sequence 331 2e-87
5ref|NM_190647.1| Oryza sativa (japonica cultivar-group), predic... 216 8e-53
6gb|AY168645.1| Oryza sativa (japonica cultivar-group) COI1 mRNA,... 216 8e-53
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 216 8e-53
8gb|DQ028826.1| Oryza sativa (japonica cultivar-group) coronatine... 216 8e-53
9dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic D... 216 8e-53
10dbj|AK121543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 8e-53
11gb|AY111944.1| Zea mays CL896_2 mRNA sequence 137 6e-29
12gb|AY109565.1| Zea mays CL896_1 mRNA sequence 137 6e-29
13gb|BT019152.1| Zea mays clone Contig815.F mRNA sequence 131 4e-27
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.16
15gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 geno... 46 0.16
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.16
17gb|AF536527.1| Glycine max putative coronatine-insensitive 1 (CO... 44 0.65
18gb|BT009618.1| Triticum aestivum clone wre1n.pk0122.d3:fis, full... 44 0.65
19gb|AE014075.1| Escherichia coli CFT073, complete genome 42 2.6
20gb|CP000243.1| Escherichia coli UTI89, complete genome 42 2.6
21gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Canc... 42 2.6
22gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosom... 42 2.6
23emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on ch... 42 2.6

>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01,
             complete sequence
          Length = 126532

 Score =  355 bits (179), Expect = 1e-94
 Identities = 452/543 (83%)
 Strand = Plus / Minus

                                                                         
Query: 187   gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246
             |||| ||||||||||||||||||| |||||| |||||  | ||||||||||||||| |||
Sbjct: 37502 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 37443

                                                                         
Query: 247   cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306
             |   |||||||||||||||||||| ||||||||| ||||| ||||| || || |||||||
Sbjct: 37442 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 37383

                                                                         
Query: 307   ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366
             |  |||  |||   ||  |||| |  | |||||| |||||||| ||||||||||||||||
Sbjct: 37382 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 37323

                                                                         
Query: 367   ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426
             | |||||||||||||| ||| | ||||| | ||| ||  |||||||||| ||||| ||||
Sbjct: 37322 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 37263

                                                                         
Query: 427   acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486
             | ||||| ||||||||  || |||  ||| |||| |||||  |||| |||||||| || |
Sbjct: 37262 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 37203

                                                                         
Query: 487   tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546
             ||||||  ||||||||| ||||||||   |||||   |||||| | ||| |  || ||||
Sbjct: 37202 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 37143

                                                                         
Query: 547   ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606
             | |||| |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct: 37142 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 37083

                                                                         
Query: 607   agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666
             ||  ||||||   ||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 37082 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 37023

                                                                         
Query: 667   tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726
             | ||||||||||||||||| |||||| |||||||||| |  |||||||||||||||||||
Sbjct: 37022 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 36963

                
Query: 727   ctt 729
             |||
Sbjct: 36962 ctt 36960



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 12    ttagtatacatcttcctaggatt 34
             |||||||||||||||||||||||
Sbjct: 37702 ttagtatacatcttcctaggatt 37680



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  355 bits (179), Expect = 1e-94
 Identities = 452/543 (83%)
 Strand = Plus / Minus

                                                                            
Query: 187      gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246
                |||| ||||||||||||||||||| |||||| |||||  | ||||||||||||||| |||
Sbjct: 21918288 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 21918229

                                                                            
Query: 247      cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306
                |   |||||||||||||||||||| ||||||||| ||||| ||||| || || |||||||
Sbjct: 21918228 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 21918169

                                                                            
Query: 307      ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366
                |  |||  |||   ||  |||| |  | |||||| |||||||| ||||||||||||||||
Sbjct: 21918168 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagggcc 21918109

                                                                            
Query: 367      ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426
                | |||||||||||||| ||| | ||||| | ||| ||  |||||||||| ||||| ||||
Sbjct: 21918108 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 21918049

                                                                            
Query: 427      acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486
                | ||||| ||||||||  || |||  ||| |||| |||||  |||| |||||||| || |
Sbjct: 21918048 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 21917989

                                                                            
Query: 487      tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546
                ||||||  ||||||||| ||||||||   |||||   |||||| | ||| |  || ||||
Sbjct: 21917988 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 21917929

                                                                            
Query: 547      ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606
                | |||| |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct: 21917928 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 21917869

                                                                            
Query: 607      agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666
                ||  ||||||   ||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 21917868 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 21917809

                                                                            
Query: 667      tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726
                | ||||||||||||||||| |||||| |||||||||| |  |||||||||||||||||||
Sbjct: 21917808 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 21917749

                   
Query: 727      ctt 729
                |||
Sbjct: 21917748 ctt 21917746



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 12       ttagtatacatcttcctaggatt 34
                |||||||||||||||||||||||
Sbjct: 21918488 ttagtatacatcttcctaggatt 21918466



to top

>dbj|AK101514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F05, full
            insert sequence
          Length = 2305

 Score =  347 bits (175), Expect = 3e-92
 Identities = 451/543 (83%)
 Strand = Plus / Minus

                                                                        
Query: 187  gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246
            |||| ||||||||||||||||||| |||||| |||||  | ||||||||||||||| |||
Sbjct: 2018 gtatttacagtcacgcaggatacaaaggaaccacagatcgtgggcagtccgacctcttcc 1959

                                                                        
Query: 247  cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306
            |   |||||||||||||||||||| ||||||||| ||||| ||||| || || |||||||
Sbjct: 1958 cggcaagggagtagtatgcaagtatctgagcttgactatctacacaaggttcaccatctt 1899

                                                                        
Query: 307  ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366
            |  |||  |||   ||  |||| |  | |||||| |||||||| |||||||||||| |||
Sbjct: 1898 ctctcattcgatttgcattctcagaactgggaggtgtaaactctatgttccagaagcgcc 1839

                                                                        
Query: 367  ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426
            | |||||||||||||| ||| | ||||| | ||| ||  |||||||||| ||||| ||||
Sbjct: 1838 tggccatgagcatgagatcgtgaccagtcttagaagccttgtagccctgtacccacacgt 1779

                                                                        
Query: 427  acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486
            | ||||| ||||||||  || |||  ||| |||| |||||  |||| |||||||| || |
Sbjct: 1778 atctcagggaaggcatactccgtatagcgcgggctaaagcttgctcactgaagcaacaac 1719

                                                                        
Query: 487  tccttaattcaagcttcagcaggttccggcacccagctgcaaaactgattaatccgtcat 546
            ||||||  ||||||||| ||||||||   |||||   |||||| | ||| |  || ||||
Sbjct: 1718 tccttagctcaagcttccgcaggttctcacaccccaatgcaaaccggatcagaccatcat 1659

                                                                        
Query: 547  ccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgctgtccaatat 606
            | |||| |||||| ||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct: 1658 ctgtttccccaacattacccagaagcatgtattggataattccactgtactgtccaatat 1599

                                                                        
Query: 607  agttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaacctccgaagtt 666
            ||  ||||||   ||||||||| ||||||||||||| ||||||||| |||||||||||||
Sbjct: 1598 agccaaggcctgtatctgaaagtccccctggtctcaagtatagagcaaacctccgaagtt 1539

                                                                        
Query: 667  tagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatctgttatcctct 726
            | ||||||||||||||||| |||||| |||||||||| |  |||||||||||||||||||
Sbjct: 1538 tcgtgcagcccctcagcagtgcacggacaccattgtctaagggcaaatctgttatcctct 1479

               
Query: 727  ctt 729
            |||
Sbjct: 1478 ctt 1476



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 12   ttagtatacatcttcctaggatt 34
            |||||||||||||||||||||||
Sbjct: 2218 ttagtatacatcttcctaggatt 2196



to top

>gb|AY109490.1| Zea mays CL920_1 mRNA sequence
          Length = 2298

 Score =  331 bits (167), Expect = 2e-87
 Identities = 464/563 (82%)
 Strand = Plus / Minus

                                                                        
Query: 177  ccagctttgtgtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtcc 236
            ||||||| || ||| |||| |||||||||||||| |||||| || || || |||||||||
Sbjct: 2024 ccagcttagtctatttacactcacgcaggatacaaaggaaccacggattgtgggcagtcc 1965

                                                                        
Query: 237  gacctcctcccactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggc 296
              |||| | ||    ||||||| ||||||||||| |||||| || ||||| ||||| |||
Sbjct: 1964 agcctcttaccggcgagggagtggtatgcaagtatctgagcgtgactatctacacaaggc 1905

                                                                        
Query: 297  tccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttc 356
            ||||||||||||||||||| |||  || |||  |    |||||| |||||||| ||||||
Sbjct: 1904 tccccatcttccatcagccaacctccgttcttaggattgggaggtgtaaactctatgttc 1845

                                                                        
Query: 357  cagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgc 416
            ||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||| 
Sbjct: 1844 cagaagggccttgccatgagcatgaggtctcggccggtttgagacgctttgtagccctga 1785

                                                                        
Query: 417  acccatacgtacctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctg 476
            ||||||||||||||||| |||||||| |  ||||  || |||||||  || |||||||||
Sbjct: 1784 acccatacgtacctcagggaaggcatatgtagtattgcaagggccagtgctcgctcgctg 1725

                                                                        
Query: 477  aagcagcagctccttaattcaagcttcagcaggttccggcacccagctgcaaaactgatt 536
            |||||||| ||||| | |||||||||  |||||||   ||| ||   ||| || ||||| 
Sbjct: 1724 aagcagcaactcctgagttcaagctttcgcaggtttacgcaacccaatgcgaagctgatc 1665

                                                                        
Query: 537  aatccgtcatccgtttgcccaacgttacccagaagcatgtagtggatagttccactgtgc 596
            ||||| ||||| |||| |||||| ||||| ||||||||||| |||||  |||| |||  |
Sbjct: 1664 aatccatcatcagtttccccaacattaccgagaagcatgtactggatgtttccgctgcac 1605

                                                                        
Query: 597  tgtccaatatagttaaggcccacatctgaaaggccccctggtctcaggtatagagcgaac 656
            |||||||| |||   || ||  ||||||| || || |||||||||| ||| ||||| |||
Sbjct: 1604 tgtccaatgtagccgagacctgcatctgagagccctcctggtctcaagtacagagcaaac 1545

                                                                        
Query: 657  ctccgaagtttagtgcagcccctcagcagcgcacgggcaccattgtccagtggcaaatct 716
            |||||||| || ||||||||||||| ||  || ||| ||||||||||||||||||| |||
Sbjct: 1544 ctccgaagcttggtgcagcccctcaacaaagctcggacaccattgtccagtggcaagtct 1485

                                   
Query: 717  gttatcctctcttgtctgtcaag 739
            ||||||||||||| ||| |||||
Sbjct: 1484 gttatcctctcttctctatcaag 1462



to top

>ref|NM_190647.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1893

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
            ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695

                                                                        
Query: 396  tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
            ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635

                                                                        
Query: 456  agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
            |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575

                                                                        
Query: 516  cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
            || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515

                                                                        
Query: 576  tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
            || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455

                                                                        
Query: 636  ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
            ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 1454 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1395

                                     
Query: 696  ccattgtccagtggcaaatctgtta 720
            |||||||| ||||||| ||||||||
Sbjct: 1394 ccattgtcaagtggcagatctgtta 1370



to top

>gb|AY168645.1| Oryza sativa (japonica cultivar-group) COI1 mRNA, complete cds
          Length = 2088

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
            ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 1714 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1655

                                                                        
Query: 396  tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
            ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 1654 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1595

                                                                        
Query: 456  agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
            |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 1594 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1535

                                                                        
Query: 516  cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
            || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 1534 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1475

                                                                        
Query: 576  tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
            || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 1474 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1415

                                                                        
Query: 636  ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
            ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 1414 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1355

                                     
Query: 696  ccattgtccagtggcaaatctgtta 720
            |||||||| ||||||| ||||||||
Sbjct: 1354 ccattgtcaagtggcagatctgtta 1330



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 12   ttagtatacatcttcctaggatt 34
            |||||||||||||||||||||||
Sbjct: 2061 ttagtatacatcttcctaggatt 2039



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                            
Query: 336      ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
                ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 36743751 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 36743692

                                                                            
Query: 396      tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
                ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 36743691 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 36743632

                                                                            
Query: 456      agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
                |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 36743631 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 36743572

                                                                            
Query: 516      cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
                || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 36743571 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 36743512

                                                                            
Query: 576      tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
                || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 36743511 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 36743452

                                                                            
Query: 636      ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
                ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 36743451 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 36743392

                                         
Query: 696      ccattgtccagtggcaaatctgtta 720
                |||||||| ||||||| ||||||||
Sbjct: 36743391 ccattgtcaagtggcagatctgtta 36743367



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 12       ttagtatacatcttcctaggatt 34
                |||||||||||||||||||||||
Sbjct: 36744094 ttagtatacatcttcctaggatt 36744072



to top

>gb|DQ028826.1| Oryza sativa (japonica cultivar-group) coronatine-insensitive 1 mRNA,
            complete cds
          Length = 1893

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
            ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 1754 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1695

                                                                        
Query: 396  tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
            ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 1694 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1635

                                                                        
Query: 456  agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
            |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 1634 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1575

                                                                        
Query: 516  cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
            || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 1574 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1515

                                                                        
Query: 576  tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
            || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 1514 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1455

                                                                        
Query: 636  ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
            ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 1454 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1395

                                     
Query: 696  ccattgtccagtggcaaatctgtta 720
            |||||||| ||||||| ||||||||
Sbjct: 1394 ccattgtcaagtggcagatctgtta 1370



to top

>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0529E05
          Length = 134982

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                         
Query: 336   ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
             ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 70066 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 70007

                                                                         
Query: 396   tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
             ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 70006 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 69947

                                                                         
Query: 456   agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
             |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 69946 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 69887

                                                                         
Query: 516   cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
             || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 69886 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 69827

                                                                         
Query: 576   tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
             || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 69826 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 69767

                                                                         
Query: 636   ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
             ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 69766 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 69707

                                      
Query: 696   ccattgtccagtggcaaatctgtta 720
             |||||||| ||||||| ||||||||
Sbjct: 69706 ccattgtcaagtggcagatctgtta 69682



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 12    ttagtatacatcttcctaggatt 34
             |||||||||||||||||||||||
Sbjct: 70409 ttagtatacatcttcctaggatt 70387



to top

>dbj|AK121543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032A10, full
            insert sequence
          Length = 2163

 Score =  216 bits (109), Expect = 8e-53
 Identities = 316/385 (82%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggaggcgtaaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtt 395
            ||||| |||||||| ||||||||||| ||||| |||||||||| ||||||  |||| |||
Sbjct: 1730 ggaggtgtaaactcgatgttccagaaaggcctggccatgagcaggaggtcaaggcctgtt 1671

                                                                        
Query: 396  tgagaggctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcg 455
            ||||| |||||||| || |||||||||| ||| ||||| || ||||| | |||||| |||
Sbjct: 1670 tgagatgctctgtatccttgcacccatatgtatctcagggagggcatctgcagtacagcg 1611

                                                                        
Query: 456  agggccaaagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccgg 515
            |||| |||||| |||||||||||||||||||| || |||||||||||| | |||||   |
Sbjct: 1610 agggacaaagctcgctcgctgaagcagcagcttctcaattcaagcttctgaaggttggtg 1551

                                                                        
Query: 516  cacccagctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatg 575
            || ||  |||| |||| ||| ||||| |  || | ||  ||||| || ||||| ||||||
Sbjct: 1550 cagcccactgcgaaacggatcaatccatggtcagattcaccaacattgcccagtagcatg 1491

                                                                        
Query: 576  tagtggatagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccct 635
            || |||||| ||||||||| |||||| || ||| |||||||  |||||||||| || |||
Sbjct: 1490 tattggatatttccactgtactgtccgatgtagctaaggccatcatctgaaagccctcct 1431

                                                                        
Query: 636  ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
            ||||| ||||| ||||| ||||||||||| || |||||    || | ||| |||| | ||
Sbjct: 1430 ggtctaaggtagagagcaaacctccgaagctttgtgcaatttcttaacagagcacagaca 1371

                                     
Query: 696  ccattgtccagtggcaaatctgtta 720
            |||||||| ||||||| ||||||||
Sbjct: 1370 ccattgtcaagtggcagatctgtta 1346



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 12   ttagtatacatcttcctaggatt 34
            |||||||||||||||||||||||
Sbjct: 2073 ttagtatacatcttcctaggatt 2051



to top

>gb|AY111944.1| Zea mays CL896_2 mRNA sequence
          Length = 579

 Score =  137 bits (69), Expect = 6e-29
 Identities = 261/325 (80%)
 Strand = Plus / Minus

                                                                       
Query: 187 gtatgtacagtcacgcaggatacagaggaacaacagactgcgggcagtccgacctcctcc 246
           |||| |||||||||||||||| || || ||| |   || |||| ||||||| |||||| |
Sbjct: 367 gtatctacagtcacgcaggatgcaaagtaacgagccaccgcggacagtccggcctccttc 308

                                                                       
Query: 247 cactaagggagtagtatgcaagtacctgagcttgcctatcaacacagggctccccatctt 306
           ||   ||||| ||||| || || |||||||| ||  | || ||||| ||||  |||||  
Sbjct: 307 cagcgagggaatagtacgcgagaacctgagcatgggtgtcgacacaaggctgtccatccg 248

                                                                       
Query: 307 ccatcagccgacccgcgctctccgtgccgggaggcgtaaactcaatgttccagaagggcc 366
           |||||| ||||| ||||||||| |  | |||||||   ||||| ||||||||| | ||||
Sbjct: 247 ccatcacccgacacgcgctctcgggacggggaggcacgaactcgatgttccagtacggcc 188

                                                                       
Query: 367 ttgccatgagcatgaggtcgcggccagtttgagaggctctgtagccctgcacccatacgt 426
           | ||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 187 tggccatgagcatgaggtcccggcccgtctgagaggccctgtacccctgcacccatacgt 128

                                                                       
Query: 427 acctcagagaaggcattttcagtacggcgagggccaaagcccgctcgctgaagcagcagc 486
           ||||||| || ||||| |  || ||||| |  ||||  ||||||||||||||||||||||
Sbjct: 127 acctcagcgagggcatctggagcacggccaccgccagggcccgctcgctgaagcagcagc 68

                                    
Query: 487 tccttaattcaagcttcagcaggtt 511
            ||| |  || |||||| |||||||
Sbjct: 67  ccctcagctccagcttccgcaggtt 43



to top

>gb|AY109565.1| Zea mays CL896_1 mRNA sequence
          Length = 2190

 Score =  137 bits (69), Expect = 6e-29
 Identities = 405/517 (78%)
 Strand = Plus / Minus

                                                                        
Query: 223  actgcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcc 282
            |||| |||||||||| |||||| |||  ||||||||| || ||||| ||||| || ||  
Sbjct: 1934 actgagggcagtccggcctccttccagcaagggagtaatacgcaaggacctgggcatggg 1875

                                                                        
Query: 283  tatcaacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcg 342
            | |||||||| ||||  |||||| |||||| ||||   |||||||| |    ||||||||
Sbjct: 1874 tgtcaacacaaggctgtccatctgccatcacccgataagcgctctcgggaatgggaggcg 1815

                                                                        
Query: 343  taaactcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagagg 402
              || |||||||||||| | ||||| |||||||||||||||||  |||| ||| ||||||
Sbjct: 1814 cgaattcaatgttccagtacggcctggccatgagcatgaggtcctggcccgttcgagagg 1755

                                                                        
Query: 403  ctctgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggcca 462
            ||||||| ||||||||||||| ||||||||| || ||||| |  || ||||| |  ||||
Sbjct: 1754 ctctgtacccctgcacccatatgtacctcagcgagggcatctggagcacggccactgcca 1695

                                                                        
Query: 463  aagcccgctcgctgaagcagcagctccttaattcaagcttcagcaggttccggcacccag 522
             ||| ||||||||||||||||||| ||| |  || |||||| |||||||   ||| || |
Sbjct: 1694 gagctcgctcgctgaagcagcagcccctcagctcgagcttccgcaggttggtgcatcccg 1635

                                                                        
Query: 523  ctgcaaaactgattaatccgtcatccgtttgcccaacgttacccagaagcatgtagtgga 582
             ||||||   ||| |||||||  || | ||  |||||||| || || |||||||| ||||
Sbjct: 1634 ttgcaaactggatcaatccgttgtcagattcaccaacgttgccgagcagcatgtattgga 1575

                                                                        
Query: 583  tagttccactgtgctgtccaatatagttaaggcccacatctgaaaggccccctggtctca 642
            |  | |||||||   ||||||| ||    ||||| || |||||||| || || |||||||
Sbjct: 1574 tgttcccactgtatagtccaatgtaaccgaggcctacgtctgaaagccctcccggtctca 1515

                                                                        
Query: 643  ggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggcaccattgt 702
            |||| |  || ||||||||||||||   ||||  |||||| || |||||| | || ||||
Sbjct: 1514 ggtagaaggcaaacctccgaagtttgacgcagttcctcagtagggcacggacgccgttgt 1455

                                                 
Query: 703  ccagtggcaaatctgttatcctctcttgtctgtcaag 739
            | |||||||  ||||||||| |||  ||| |||||||
Sbjct: 1454 caagtggcaggtctgttatcttcttctgtttgtcaag 1418



to top

>gb|BT019152.1| Zea mays clone Contig815.F mRNA sequence
          Length = 1411

 Score =  131 bits (66), Expect = 4e-27
 Identities = 231/286 (80%)
 Strand = Plus / Minus

                                                                        
Query: 226  gcgggcagtccgacctcctcccactaagggagtagtatgcaagtacctgagcttgcctat 285
            |||| ||||||| |||||| |||   ||||| ||||| || || |||||||| ||  | |
Sbjct: 1059 gcggacagtccggcctccttccagcgagggaatagtacgcgagaacctgagcatgggtgt 1000

                                                                        
Query: 286  caacacagggctccccatcttccatcagccgacccgcgctctccgtgccgggaggcgtaa 345
            | ||||| ||||  |||||  |||||| ||||| ||||||||| |  | |||||||   |
Sbjct: 999  cgacacaaggctgtccatccgccatcacccgacacgcgctctcgggacggggaggcacga 940

                                                                        
Query: 346  actcaatgttccagaagggccttgccatgagcatgaggtcgcggccagtttgagaggctc 405
            |||| ||||||||| | ||||| ||||||||||||||||| ||||| || |||||||| |
Sbjct: 939  actcgatgttccagtacggcctggccatgagcatgaggtcccggcccgtctgagaggccc 880

                                                                        
Query: 406  tgtagccctgcacccatacgtacctcagagaaggcattttcagtacggcgagggccaaag 465
            |||| ||||||||||||||||||||||| || ||||| |  || ||||| |  ||||  |
Sbjct: 879  tgtacccctgcacccatacgtacctcagcgagggcatctggagcacggccaccgccaggg 820

                                                          
Query: 466  cccgctcgctgaagcagcagctccttaattcaagcttcagcaggtt 511
            ||||||||||||||||||||| ||| |  || |||||| |||||||
Sbjct: 819  cccgctcgctgaagcagcagcccctcagctccagcttccgcaggtt 774



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                       
Query: 636 ggtctcaggtatagagcgaacctccgaagtttagtgcagcccctcagcagcgcacgggca 695
           ||||||||||| |  ||||||| |||||| || || |||| |||||| || || ||| ||
Sbjct: 649 ggtctcaggtacaaggcgaaccgccgaagcttggtacagctcctcagtagagctcggaca 590

                                     
Query: 696 ccattgtccagtggcaaatctgttat 721
           || |||||||| |||| ||| |||||
Sbjct: 589 ccgttgtccagcggcagatccgttat 564



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 701      gtccagtggcaaatctgttatcctctcttgt 731
                |||||||||||||||||||||| || |||||
Sbjct: 26915700 gtccagtggcaaatctgttatcatcacttgt 26915670



to top

>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete
             sequence
          Length = 149303

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 701   gtccagtggcaaatctgttatcctctcttgt 731
             |||||||||||||||||||||| || |||||
Sbjct: 94700 gtccagtggcaaatctgttatcatcacttgt 94670



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 701      gtccagtggcaaatctgttatcctctcttgt 731
                |||||||||||||||||||||| || |||||
Sbjct: 27007023 gtccagtggcaaatctgttatcatcacttgt 27006993



to top

>gb|AF536527.1| Glycine max putative coronatine-insensitive 1 (COI1) gene, partial
           cds
          Length = 711

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 696 ccattgtccagtggcaaatctgttatcctctctt 729
           |||||||| ||||||||||| |||||| ||||||
Sbjct: 203 ccattgtcaagtggcaaatcagttatcttctctt 170



to top

>gb|BT009618.1| Triticum aestivum clone wre1n.pk0122.d3:fis, full insert mRNA
           sequence
          Length = 1074

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 343 taaactcaatgttccagaaggg 364
           ||||||||||||||||||||||
Sbjct: 539 taaactcaatgttccagaaggg 518



to top

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 459     gccaaagcccgctcgctgaag 479
               |||||||||||||||||||||
Sbjct: 1513162 gccaaagcccgctcgctgaag 1513142



to top

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 459     gccaaagcccgctcgctgaag 479
               |||||||||||||||||||||
Sbjct: 1348610 gccaaagcccgctcgctgaag 1348590



to top

>gb|AC160000.9| Mus musculus 6 BAC RP24-340J19 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 198476

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   acagggctccccatcttccat 310
             |||||||||||||||||||||
Sbjct: 96433 acagggctccccatcttccat 96453



to top

>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   acagggctccccatcttccat 310
             |||||||||||||||||||||
Sbjct: 18199 acagggctccccatcttccat 18219



to top

>emb|AL840623.10| Mouse DNA sequence from clone RP23-289L17 on chromosome 4, complete
              sequence
          Length = 112610

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 103    catacaatacccacatacaaacata 127
              ||||||| |||||||||||||||||
Sbjct: 106343 catacaacacccacatacaaacata 106367


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,447,164
Number of Sequences: 3902068
Number of extensions: 5447164
Number of successful extensions: 96398
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96175
Number of HSP's gapped (non-prelim): 218
length of query: 740
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 717
effective length of database: 17,143,297,704
effective search space: 12291744453768
effective search space used: 12291744453768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top