ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdo03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK063603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C06, full insert sequence Length = 614 Score = 194 bits (98), Expect = 3e-46 Identities = 197/230 (85%) Strand = Plus / Minus Query: 424 cgttccttaggagcaccatatgttatcaatatgtaaatcccaccaggcctcataagcctt 483 |||||||||||| ||||||||||||||| ||||| |||||||||||||| | || |||| Sbjct: 246 cgttccttaggacaaccatatgttatcaacatgtagatcccaccaggcctaagaatcctt 187 Query: 484 gctacttctgttagcattttgtaagcaccatgaggggcatcatcgccacacatcatagca 543 || ||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||| Sbjct: 186 gccacttctgctagcattttggaagcaccaagaggagcatcatcgccacacatcatagcg 127 Query: 544 tccaaggttcctttgtcgatgatacaatcaaatgatccatccccaaagaagctcatatct 603 ||||| || ||||| || | || |||||| |||| |||||| ||||| || ||||| || Sbjct: 126 tccaatgtacctttatcaaggacacaatcgaatgttccatcaccaaacaaactcatgtcc 67 Query: 604 ctgacatccaactgcatatatgtaagctgtgggatatccatgtgtttctc 653 || ||||||| ||| | ||||||||||||||| ||||| | ||||||||| Sbjct: 66 ctaacatccatctggaaatatgtaagctgtggaatatcaacgtgtttctc 17 Score = 107 bits (54), Expect = 5e-20 Identities = 78/86 (90%) Strand = Plus / Minus Query: 229 caaacataaatgaaatgtgactctggatccttgagaacgtagtcaggtggtaattgacca 288 |||| |||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 444 caaatataaataaaatgtgactctggatctttaagaacatagtcaggtggtaattgacca 385 Query: 289 tccactgtcagtgcaactttctccat 314 |||||||||| || ||||| |||||| Sbjct: 384 tccactgtcaatgaaacttcctccat 359
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 107 bits (54), Expect = 5e-20 Identities = 122/145 (84%), Gaps = 6/145 (4%) Strand = Plus / Minus Query: 229 caaacataaatgaaatgtgactctggatccttgagaacgtagtcaggtggtaattgacca 288 |||| |||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 106024 caaatataaataaaatgtgactctggatctttaagaacatagtcaggtggtaattgacca 105965 Query: 289 tccactgtcagtgcaactttctccatcatggcgtgtgcag------caccgttgctccat 342 |||||||||| || ||||| |||||| || | |||||| |||| ||||||||| Sbjct: 105964 tccactgtcaatgaaacttcctccatgataggttgtgcaagtgaaacacctttgctccat 105905 Query: 343 ttcatctggtattcaggtgtcgctg 367 |||| ||||||| ||||||| |||| Sbjct: 105904 ttcaactggtatccaggtgtggctg 105880 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 480 ccttgctacttctgttagcattttgtaagcaccatgaggggcatcatcgccacac 534 |||||| ||||||| |||||||||| |||||||| |||| ||||||||||||||| Sbjct: 105363 ccttgccacttctgctagcattttggaagcaccaagaggagcatcatcgccacac 105309 Score = 44.1 bits (22), Expect = 0.60 Identities = 49/58 (84%) Strand = Plus / Minus Query: 623 atgtaagctgtgggatatccatgtgtttctctttcatatgctcgattacaacggatga 680 ||||||||||||| ||||| | ||||||||| |||| ||||| || || |||||||| Sbjct: 104876 atgtaagctgtggaatatcaacgtgtttctccctcatctgctcaatgactacggatga 104819
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 107 bits (54), Expect = 5e-20 Identities = 122/145 (84%), Gaps = 6/145 (4%) Strand = Plus / Minus Query: 229 caaacataaatgaaatgtgactctggatccttgagaacgtagtcaggtggtaattgacca 288 |||| |||||| ||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 18938646 caaatataaataaaatgtgactctggatctttaagaacatagtcaggtggtaattgacca 18938587 Query: 289 tccactgtcagtgcaactttctccatcatggcgtgtgcag------caccgttgctccat 342 |||||||||| || ||||| |||||| || | |||||| |||| ||||||||| Sbjct: 18938586 tccactgtcaatgaaacttcctccatgataggttgtgcaagtgaaacacctttgctccat 18938527 Query: 343 ttcatctggtattcaggtgtcgctg 367 |||| ||||||| ||||||| |||| Sbjct: 18938526 ttcaactggtatccaggtgtggctg 18938502 Score = 69.9 bits (35), Expect = 1e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 480 ccttgctacttctgttagcattttgtaagcaccatgaggggcatcatcgccacac 534 |||||| ||||||| |||||||||| |||||||| |||| ||||||||||||||| Sbjct: 18937985 ccttgccacttctgctagcattttggaagcaccaagaggagcatcatcgccacac 18937931 Score = 44.1 bits (22), Expect = 0.60 Identities = 49/58 (84%) Strand = Plus / Minus Query: 623 atgtaagctgtgggatatccatgtgtttctctttcatatgctcgattacaacggatga 680 ||||||||||||| ||||| | ||||||||| |||| ||||| || || |||||||| Sbjct: 18937498 atgtaagctgtggaatatcaacgtgtttctccctcatctgctcaatgactacggatga 18937441
>gb|AY107401.1| Zea mays PCO089972 mRNA sequence Length = 448 Score = 77.8 bits (39), Expect = 4e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 228 acaaacataaatgaaatgtgactctggatccttgagaacgtagtcaggtgg 278 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct: 251 acaaacataaatgaaatgtgaatctggatctttgagaacatagtcaggtgg 301
>emb|AJ628157.1| Ononis spinosa subsp. procurrens microsatellite DNA, clone di17 Length = 452 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 588 aaagaagctcatatctctgacatccaactgcat 620 ||||||||||||||| |||||||||| |||||| Sbjct: 152 aaagaagctcatatccctgacatccatctgcat 120
>gb|BT012717.1| Lycopersicon esculentum clone 113603R, mRNA sequence Length = 1666 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 571 tcaaatgatccatccccaaagaagctcatatctctgacatcca 613 ||||||||| |||| |||||| ||||||||||||||||||| Sbjct: 525 tcaaatgattcatcaggaaagaaactcatatctctgacatcca 483
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 130 ataattaattcgcgcattgtggtcgggctctatta 164 |||||||||||| |||||||||||| |||||||| Sbjct: 125827 ataattaattcggtcattgtggtcggactctatta 125793 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 130 ataattaattcgcgcattgtggtcgggctctatta 164 |||||||||||| |||||||||||| |||||||| Sbjct: 106629 ataattaattcggtcattgtggtcggactctatta 106663
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 130 ataattaattcgcgcattgtggtcgggctctatta 164 |||||||||||| |||||||||||| |||||||| Sbjct: 62209 ataattaattcggtcattgtggtcggactctatta 62175
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15 Length = 43481 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 561 gatgatacaatcaaatgatcca 582 |||||||||||||||||||||| Sbjct: 39562 gatgatacaatcaaatgatcca 39583
>ref|XM_508287.1| PREDICTED: Pan troglodytes similar to ubiquitin specific protease 47; Trf (TATA binding protein-related factor)-proximal homolog (Drosophila) (LOC451029), mRNA Length = 2607 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 726 tccactgtcagtgcaactttc 706
>ref|NM_017944.3| Homo sapiens ubiquitin specific peptidase 47 (USP47), mRNA Length = 7777 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1813 tccactgtcagtgcaactttc 1793
>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence Length = 228337 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 aattatcttcagtcactatat 217 ||||||||||||||||||||| Sbjct: 42560 aattatcttcagtcactatat 42580
>gb|AC092610.1| Homo sapiens BAC clone RP11-160E17 from 7, complete sequence Length = 162018 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 98 gatcagaagcaaatcattttggagtcatg 126 ||||||||||||||||| ||||| ||||| Sbjct: 100076 gatcagaagcaaatcatgttggattcatg 100104
>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete sequence Length = 210030 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 aacaatctttaccattcaaac 93 ||||||||||||||||||||| Sbjct: 136233 aacaatctttaccattcaaac 136213
>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence Length = 210950 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 aacaatctttaccattcaaac 93 ||||||||||||||||||||| Sbjct: 96513 aacaatctttaccattcaaac 96533
>gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, complete sequence Length = 195122 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 169111 tccactgtcagtgcaactttc 169131
>gb|BC071559.1| Homo sapiens ubiquitin specific peptidase 47, mRNA (cDNA clone IMAGE:4815410), containing frame-shift errors Length = 4524 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1465 tccactgtcagtgcaactttc 1445
>gb|AC151460.34| Medicago truncatula clone mth2-6f11, complete sequence Length = 100262 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 atcaatggtaacaatctttac 84 ||||||||||||||||||||| Sbjct: 42320 atcaatggtaacaatctttac 42340
>emb|CR749502.1| Homo sapiens mRNA; cDNA DKFZp686C13257 (from clone DKFZp686C13257) Length = 2080 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1253 tccactgtcagtgcaactttc 1233
>dbj|AK127264.1| Homo sapiens cDNA FLJ45331 fis, clone BRHIP3007223, weakly similar to Ubiquitin carboxyl-terminal hydrolase 64E (EC 3.1.2.15) (Ubiquitin thiolesterase 64E) (Ubiquitin-specific processing protease 64E) (Deubiquitinating enzyme 64E) Length = 4857 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1813 tccactgtcagtgcaactttc 1793
>dbj|AK092290.1| Homo sapiens cDNA FLJ34971 fis, clone NTONG2005373, moderately similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64E (EC 3.1.2.15) Length = 3112 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1434 tccactgtcagtgcaactttc 1414
>dbj|AK027362.1| Homo sapiens cDNA FLJ14456 fis, clone HEMBB1001915, moderately similar to UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64E (EC 3.1.2.15) Length = 4425 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 1218 tccactgtcagtgcaactttc 1198
>gb|AC025741.5| Homo sapiens BAC clone RP11-501E14 from 4, complete sequence Length = 190221 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 225 gtaacaaacataaatgaaatg 245 ||||||||||||||||||||| Sbjct: 106551 gtaacaaacataaatgaaatg 106571
>gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, complete sequence Length = 155143 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 289 tccactgtcagtgcaactttc 309 ||||||||||||||||||||| Sbjct: 287 tccactgtcagtgcaactttc 267
>gb|AC161580.12| Mus musculus chromosome 3, clone RP23-422D10, complete sequence Length = 224193 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 193517 catgtgtttctttttcatatgctc 193494 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 160917 catgtgtttctttttcatatgctc 160894 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 128305 catgtgtttctttttcatatgctc 128282 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 95638 catgtgtttctttttcatatgctc 95615
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 atgttatcaatatgtaaatc 462 |||||||||||||||||||| Sbjct: 1915427 atgttatcaatatgtaaatc 1915446
>gb|AC151473.3| Mus musculus BAC clone RP24-492O15 from chromosome 17, complete sequence Length = 128797 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 cattttgtaagcaccatgag 517 |||||||||||||||||||| Sbjct: 22722 cattttgtaagcaccatgag 22741
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 attcgcgcattgtggtcggg 156 |||||||||||||||||||| Sbjct: 1711740 attcgcgcattgtggtcggg 1711721
>ref|XM_911199.2| PREDICTED: Mus musculus RIKEN cDNA 1810008N23 gene (1810008N23Rik), mRNA Length = 2840 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 840 catgtgtttctttttcatatgctc 863
>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence Length = 166948 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 638 tatccatgtgtttctctttc 657 |||||||||||||||||||| Sbjct: 78166 tatccatgtgtttctctttc 78147
>gb|AC122008.4| Mus musculus BAC clone RP24-344F8 from chromosome 3, complete sequence Length = 209378 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 165708 catgtgtttctttttcatatgctc 165731 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 133041 catgtgtttctttttcatatgctc 133064 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 100429 catgtgtttctttttcatatgctc 100452 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 67829 catgtgtttctttttcatatgctc 67852 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 35224 catgtgtttctttttcatatgctc 35247 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 catgtgtttctctttcatatgctc 665 ||||||||||| |||||||||||| Sbjct: 2621 catgtgtttctttttcatatgctc 2644
>gb|AC151816.17| Medicago truncatula clone mth2-85j22, complete sequence Length = 91918 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 gaccagcaaccatggaattatctt 205 |||||||||||| ||||||||||| Sbjct: 47310 gaccagcaaccaaggaattatctt 47287
>gb|AC130808.36| Medicago truncatula clone mth2-34k9, complete sequence Length = 113091 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gaccagcaaccatggaattatctt 205 |||||||||||| ||||||||||| Sbjct: 41697 gaccagcaaccaaggaattatctt 41720
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 atgttatcaatatgtaaatc 462 |||||||||||||||||||| Sbjct: 1876087 atgttatcaatatgtaaatc 1876106
>gb|AY128479.1| Drosophila melanogaster RE53774 full insert cDNA Length = 3787 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 gtcgatgatacaatcaaatg 577 |||||||||||||||||||| Sbjct: 3165 gtcgatgatacaatcaaatg 3184
>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence Length = 127653 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gaccagcaaccatggaattatctt 205 |||||||||||| ||||||||||| Sbjct: 52166 gaccagcaaccaaggaattatctt 52189
>ref|NM_167868.1| Drosophila melanogaster CG9153-RA, transcript variant A (CG9153), mRNA Length = 3818 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 gtcgatgatacaatcaaatg 577 |||||||||||||||||||| Sbjct: 3213 gtcgatgatacaatcaaatg 3232
>ref|NM_138254.2| Drosophila melanogaster CG9153-RB, transcript variant B (CG9153), mRNA Length = 3770 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 558 gtcgatgatacaatcaaatg 577 |||||||||||||||||||| Sbjct: 3165 gtcgatgatacaatcaaatg 3184
>gb|AC009009.5| Homo sapiens chromosome 5 clone P1_1246B1, complete sequence Length = 79297 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 caaaccaatgatcagaagca 108 |||||||||||||||||||| Sbjct: 41695 caaaccaatgatcagaagca 41714
>ref|XM_627911.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_550), partial mRNA Length = 8988 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ttaccattcaaaccaatgat 100 |||||||||||||||||||| Sbjct: 2177 ttaccattcaaaccaatgat 2196
>dbj|AK089775.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830018F18 product:ubiquitin conjugating enzyme 7 interacting protein 1, full insert sequence Length = 3149 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tttctccatcatggcgtgtg 325 |||||||||||||||||||| Sbjct: 2954 tttctccatcatggcgtgtg 2935
>gb|AC007719.7|AC007719 Homo sapiens chromosome , clone RP11-3A12, complete sequence Length = 150831 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 cacacactcatcactctcac 24 |||||||||||||||||||| Sbjct: 26035 cacacactcatcactctcac 26054
>gb|AF002992.2| Homo sapiens chromosome X clone ICRFXc104-C024, Qc-17E5, Qc-17H2, Qc-14E2_B, Qc-12F10, ICRFXc104-D0899 map q28, complete sequence Length = 104050 Score = 40.1 bits (20), Expect = 9.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 227 aacaaacataaatgaaatgtgactctggatcc 258 |||||||||||||| ||||||| ||||||||| Sbjct: 10479 aacaaacataaatgcaatgtga-tctggatcc 10449
>gb|AF274854.4| Homo sapiens chromosome X clone RP11-45D17 map q28, complete sequence Length = 161198 Score = 40.1 bits (20), Expect = 9.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 227 aacaaacataaatgaaatgtgactctggatcc 258 |||||||||||||| ||||||| ||||||||| Sbjct: 142250 aacaaacataaatgcaatgtga-tctggatcc 142220
>emb|BX682551.5| Zebrafish DNA sequence from clone CH211-114M9 in linkage group 3, complete sequence Length = 167227 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 atgtgactctggatccttga 262 |||||||||||||||||||| Sbjct: 144332 atgtgactctggatccttga 144351
>gb|AF125164.1|AF125164 Bacteroides fragilis 638R capsular polysaccharide C (PS C2) biosynthesis operon, complete sequence; and unknown genes Length = 26443 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcaactttctccatcatggc 320 |||||||||||||||||||| Sbjct: 15195 gcaactttctccatcatggc 15176
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 gcaactttctccatcatggc 320 |||||||||||||||||||| Sbjct: 1329721 gcaactttctccatcatggc 1329702
>emb|BX005094.3| Zebrafish DNA sequence from clone CH211-180H17 in linkage group 3, complete sequence Length = 155431 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 atgtgactctggatccttga 262 |||||||||||||||||||| Sbjct: 70412 atgtgactctggatccttga 70393
>gb|AC113281.15| Mus musculus chromosome 5, clone RP23-393G8, complete sequence Length = 197920 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 tttctccatcatggcgtgtg 325 |||||||||||||||||||| Sbjct: 130921 tttctccatcatggcgtgtg 130940
>emb|CT737398.2| Pan troglodytes chromosome X clone CH251-344H20 map Xq28, complete sequence Length = 171551 Score = 40.1 bits (20), Expect = 9.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 227 aacaaacataaatgaaatgtgactctggatcc 258 |||||||||||||| ||||||| ||||||||| Sbjct: 143700 aacaaacataaatgcaatgtga-tctggatcc 143670
>gb|AC124825.8| Mus musculus chromosome 5, clone RP24-248M2, complete sequence Length = 188127 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 ttcataatcaatggtaacaa 77 |||||||||||||||||||| Sbjct: 35706 ttcataatcaatggtaacaa 35725
>emb|CT030234.9| M.truncatula DNA sequence from clone MTH2-22I15 on chromosome 3, complete sequence Length = 112511 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 gaccagcaaccatggaattatctt 205 |||||||||||| ||||||||||| Sbjct: 34404 gaccagcaaccaaggaattatctt 34381 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,215,597 Number of Sequences: 3902068 Number of extensions: 6215597 Number of successful extensions: 111045 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 110792 Number of HSP's gapped (non-prelim): 256 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
