ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdo02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphod... 32 1.5
2GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphod... 31 3.2
3ARLY_COREF (Q8FTM8) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 30 7.2
4ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 7.2
5SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor 30 9.4

>GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphodiesterase 2|
           precursor (EC 3.1.4.46)
          Length = 759

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 346 PQAQPPTVSPMPGLNATEVQQPPFPPVASK 257
           P A PP  +P P     +V +PP PPV +K
Sbjct: 689 PTAFPPAEAPNPVFTDADVTEPPLPPVTAK 718



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>GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphodiesterase 1|
           precursor (EC 3.1.4.46)
          Length = 766

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 346 PQAQPPTVSPMPGLNATEVQQPPFPPVASK 257
           P + PP  +P P     +V +PP PPV+++
Sbjct: 696 PASLPPAEAPSPVFTDADVTEPPLPPVSAR 725



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>ARLY_COREF (Q8FTM8) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 477

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = -1

Query: 362 ELGFDSSGSAANRVTDARIERNRGAAAAIPACRV--------QECTSWCRPTSGFIAV 213
           ELGFDS   AA+   DA   R+  + AA    ++        +E  +WC P  G+I +
Sbjct: 223 ELGFDS---AADNSIDATSSRDFASEAAFVLAQIAVDMSRLAEEIIAWCTPEFGYIVL 277



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>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 421 RNLNDASPAQRPCDPSSYHESSD 489
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
 Frame = +2

Query: 299 CVQSWHR*HGWRLSLRNRTLIL----RHP------SPPW*APILPSK 409
           C+ +WHR HG+  SL     IL    +HP       P W  P+L  K
Sbjct: 370 CINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKK 416


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,498,491
Number of Sequences: 219361
Number of extensions: 1893142
Number of successful extensions: 5158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5149
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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