ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdo01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphod... 32 1.6
2GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphod... 31 3.6
3ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 7.9
4ARLY_COREF (Q8FTM8) Argininosuccinate lyase (EC 4.3.2.1) (Argino... 30 7.9

>GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphodiesterase 2|
           precursor (EC 3.1.4.46)
          Length = 759

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 382 PQAQPPTVSPMPGLNATEVQQPPFPPVASK 293
           P A PP  +P P     +V +PP PPV +K
Sbjct: 689 PTAFPPAEAPNPVFTDADVTEPPLPPVTAK 718



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>GLPQ1_ARATH (Q9FJ62) Probable glycerophosphoryl diester phosphodiesterase 1|
           precursor (EC 3.1.4.46)
          Length = 766

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 382 PQAQPPTVSPMPGLNATEVQQPPFPPVASK 293
           P + PP  +P P     +V +PP PPV+++
Sbjct: 696 PASLPPAEAPSPVFTDADVTEPPLPPVSAR 725



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>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 457 RNLNDASPAQRPCDPSSYHESSD 525
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169



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>ARLY_COREF (Q8FTM8) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 477

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
 Frame = -1

Query: 398 ELGFDSSGSAANRVTDARIERNRGAAAAIPACRV--------QECTSWCRPTSGFIAV 249
           ELGFDS   AA+   DA   R+  + AA    ++        +E  +WC P  G+I +
Sbjct: 223 ELGFDS---AADNSIDATSSRDFASEAAFVLAQIAVDMSRLAEEIIAWCTPEFGYIVL 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,335,547
Number of Sequences: 219361
Number of extensions: 1960151
Number of successful extensions: 5325
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5316
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7819576386
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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