Clone Name | rbasdn20 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA Length = 1263 Score = 349 bits (176), Expect = 8e-93 Identities = 300/340 (88%), Gaps = 1/340 (0%) Strand = Plus / Minus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 895 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 836 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531 ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 835 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 776 Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591 || ||||| || || ||||| ||||||| ||||||||||| |||||| || | ||||||| Sbjct: 775 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 716 Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651 ||||||||||| ||||| |||||||| | |||||| ||||| | |||||| |||||||| Sbjct: 715 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 656 Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711 || |||| ||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct: 655 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 596 Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751 || |||||| |||||||| || ||||| |||||||||||| Sbjct: 595 aggtactcgaagcagaca-ggacagttgtgatgcattgct 557
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full insert sequence Length = 1283 Score = 349 bits (176), Expect = 8e-93 Identities = 300/340 (88%), Gaps = 1/340 (0%) Strand = Plus / Minus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 909 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 850 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531 ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 849 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 790 Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591 || ||||| || || ||||| ||||||| ||||||||||| |||||| || | ||||||| Sbjct: 789 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 730 Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651 ||||||||||| ||||| |||||||| | |||||| ||||| | |||||| |||||||| Sbjct: 729 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 670 Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711 || |||| ||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct: 669 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 610 Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751 || |||||| |||||||| || ||||| |||||||||||| Sbjct: 609 aggtactcgaagcagaca-ggacagttgtgatgcattgct 571
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence Length = 1284 Score = 341 bits (172), Expect = 2e-90 Identities = 299/340 (87%), Gaps = 1/340 (0%) Strand = Plus / Minus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||| | Sbjct: 905 gtctcccgggtgttgtaggagctgcatccggggcacttccgcgccaggacgtggaagttc 846 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531 ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 845 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 786 Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591 || ||||| || || ||||| ||||||| ||||||||||| |||||| || | ||||||| Sbjct: 785 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 726 Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651 ||||||||||| ||||| |||||||| | |||||| ||||| | |||||| |||||||| Sbjct: 725 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 666 Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711 || |||| ||||||||||||||||||||||| |||||||||||| | |||||||||||| Sbjct: 665 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 606 Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751 || |||||| |||||||| || ||||| |||||||||||| Sbjct: 605 aggtactcgaagcagaca-ggacagttgtgatgcattgct 567
>gb|AY105408.1| Zea mays PCO132099 mRNA sequence Length = 795 Score = 248 bits (125), Expect = 2e-62 Identities = 291/345 (84%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 407 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 466 |||||||||||| ||||||||| ||||||||| |||| ||||| ||| |||| ||||||| Sbjct: 585 ccctcgtctcccgggtgttgtacgagctgcacgcggggcacttgtgccccagcacgtgga 526 Query: 467 agcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggt 526 | ||||||||||| ||||| | |||||||||||| |||||||| ||||| | |||||||| Sbjct: 525 accgcacgctcgaggtcgcgctgcagtcgttgcacaggatccacaccatgtgcttctggt 466 Query: 527 agaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtca 586 ||| || ||||| || ||||| |||||||||| |||||||||| |||| | | | || Sbjct: 465 agatgtcaggcatcggcgtggccgcgacctcctcgtcgagcttccgccatgtggccgaca 406 Query: 587 tgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgt 646 |||||||||| |||| |||||| || ||||| |||||||| || || | |||||||||| Sbjct: 405 tgtcgcaggcggacctcgagcacactgggcatgagaagtgatggtgtgctctcatctcgt 346 Query: 647 tcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagt 706 ||| ||||||||||||||| || ||||| || ||||| |||||||||||| | || |||| Sbjct: 345 tcatgcactccaaatggatggtatgcccacattgcagcacgctgatgtccttcgtggagt 286 Query: 707 caaatagatactcgtagcagacaggggcagttttgatgcattgct 751 | || |||||||| ||||||| ||||||||| |||||||||||| Sbjct: 285 cgaacagatactcaaagcagac-ggggcagttgtgatgcattgct 242
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 240 bits (121), Expect = 6e-60 Identities = 290/345 (84%), Gaps = 1/345 (0%) Strand = Plus / Minus Query: 407 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 466 |||||||||||| ||||||||| || |||||| |||| ||||| ||| |||| ||||||| Sbjct: 1085 ccctcgtctcccgggtgttgtacgaactgcacgcggggcacttgtgccccagcacgtgga 1026 Query: 467 agcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggt 526 | ||||||||||| ||||| | |||||||||||| |||||||| ||||| | |||||||| Sbjct: 1025 accgcacgctcgaggtcgcgctgcagtcgttgcacaggatccacaccatgtgcttctggt 966 Query: 527 agaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtca 586 ||| || ||||| || ||||| |||||||||| |||||| ||| |||||| | | || Sbjct: 965 agatgtcaggcatcggcgtggccgcgacctcctcgtcgagtttccgccacgtggccgaca 906 Query: 587 tgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgt 646 |||||||||| |||| |||||| || ||||| |||||||| || || | |||||||||| Sbjct: 905 tgtcgcaggcggacctcgagcacactgggcatgagaagtgatggtgtgctctcatctcgt 846 Query: 647 tcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagt 706 ||| ||||||||||||||| || ||||| || ||||| || ||||||||| | || |||| Sbjct: 845 tcatgcactccaaatggatggtatgcccacattgcagcacactgatgtcctttgtggagt 786 Query: 707 caaatagatactcgtagcagacaggggcagttttgatgcattgct 751 | || ||||||||| ||||||| ||||||||| |||||||||||| Sbjct: 785 cgaacagatactcgaagcagac-ggggcagttgtgatgcattgct 742
>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full insert sequence Length = 1095 Score = 232 bits (117), Expect = 1e-57 Identities = 211/241 (87%), Gaps = 1/241 (0%) Strand = Plus / Minus Query: 511 accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570 ||||||||||||||||||||||| ||||| || || ||||| ||||||| |||||||||| Sbjct: 807 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 748 Query: 571 tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtga 630 | |||||| || | |||||||||||||||||| ||||| |||||||| | |||||| ||| Sbjct: 747 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggcaagcgaagtgatga 688 Query: 631 tgaaccctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctg 690 || | |||||| |||||||||| |||| ||||||||||||||||||||||| |||||| Sbjct: 687 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 628 Query: 691 atgtccatggtcgagtcaaatagatactcgtagcagacaggggcagttttgatgcattgc 750 |||||| | |||||||||||||| |||||| |||||||| || ||||| ||||||||||| Sbjct: 627 atgtccttcgtcgagtcaaataggtactcgaagcagaca-ggacagttgtgatgcattgc 569 Query: 751 t 751 | Sbjct: 568 t 568
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full insert sequence Length = 2604 Score = 159 bits (80), Expect = 2e-35 Identities = 270/332 (81%), Gaps = 1/332 (0%) Strand = Plus / Minus Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479 |||||||||||||||||| ||||| ||||| || ||| | |||||| ||||| |||| Sbjct: 2252 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2193 Query: 480 cgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaactctggcat 539 |||| ||| ||||||||||| |||||||||| ||| |||||||| |||| | ||||||| Sbjct: 2192 tgtcgtcccacagtcgttgcataggatccatatcattttcttctgatagatcactggcat 2133 Query: 540 gggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcgcaggccga 599 || | || || ||||| || || ||||| ||||| |||| || |||||| || || || Sbjct: 2132 cggcgatgctgcaacctcttgatcaagcttttgccatgcatgggacatgtcacaagcaga 2073 Query: 600 ccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcaggcactccaa 659 || | |||||||||||| ||||| || ||||| |||||||||| ||||| |||| Sbjct: 2072 cctcaggcagaccgggcaagagaattgttgatgggatctcatctcgtataggcattccag 2013 Query: 660 atggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaatagatactc 719 |||||||||||| |||||||||||| | |||||||| | || ||||||||||||||||| Sbjct: 2012 atggatcgtgtgtccgcagtgcagtgcactgatgtcttttgttgagtcaaatagatactc 1953 Query: 720 gtagcagacaggggcagttttgatgcattgct 751 | |||| ||| |||||||| || ||||||||| Sbjct: 1952 gaagcataca-gggcagttatggtgcattgct 1922
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 127 bits (64), Expect = 6e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 70068 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 70127 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccata 511 ||| |||||||||| ||||||||||||||||||||||||| Sbjct: 70128 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 70167 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 511 accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570 ||||||||||||||||||||||| ||||| || || ||||| ||||||| |||||||||| Sbjct: 70526 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 70585 Query: 571 tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617 | |||||| || | |||||||||||||||||| ||||| |||||||| Sbjct: 70586 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 70632 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 70734 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 70793 Query: 697 atggtcgagtcaaatagatact 718 | |||||||||||||| |||| Sbjct: 70794 ttcgtcgagtcaaataggtact 70815
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 127 bits (64), Expect = 6e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 16191179 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16191238 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccata 511 ||| |||||||||| ||||||||||||||||||||||||| Sbjct: 16191239 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16191278 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 511 accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570 ||||||||||||||||||||||| ||||| || || ||||| ||||||| |||||||||| Sbjct: 16191637 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 16191696 Query: 571 tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617 | |||||| || | |||||||||||||||||| ||||| |||||||| Sbjct: 16191697 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 16191743 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 16191845 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 16191904 Query: 697 atggtcgagtcaaatagatact 718 | |||||||||||||| |||| Sbjct: 16191905 ttcgtcgagtcaaataggtact 16191926
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 127 bits (64), Expect = 6e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||||| | Sbjct: 16199420 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16199479 Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccata 511 ||| |||||||||| ||||||||||||||||||||||||| Sbjct: 16199480 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16199519 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 511 accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570 ||||||||||||||||||||||| ||||| || || ||||| ||||||| |||||||||| Sbjct: 16199878 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 16199937 Query: 571 tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617 | |||||| || | |||||||||||||||||| ||||| |||||||| Sbjct: 16199938 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 16199984 Score = 99.6 bits (50), Expect = 1e-17 Identities = 74/82 (90%) Strand = Plus / Plus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||| |||||||||| |||| ||||||||||||||||||||||| |||||||||||| Sbjct: 16200086 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 16200145 Query: 697 atggtcgagtcaaatagatact 718 | |||||||||||||| |||| Sbjct: 16200146 ttcgtcgagtcaaataggtact 16200167
>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence Length = 1106 Score = 119 bits (60), Expect = 1e-23 Identities = 274/344 (79%), Gaps = 1/344 (0%) Strand = Plus / Minus Query: 404 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 463 |||||||||||| || |||||||||||||||||| || || ||||| ||||||| || || Sbjct: 754 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 695 Query: 464 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 523 |||| ||||| | |||||| | || ||||||||||| ||||||| |||||||||||||| Sbjct: 694 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccgtaccatcttcttct 635 Query: 524 ggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcgg 583 | |||| | ||||||| || | || || |||| ||| || ||||| ||||| |||| Sbjct: 634 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 575 Query: 584 tcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatct 643 ||||| |||||| |||| | ||| |||||||| || || || || || | ||||||| Sbjct: 574 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 515 Query: 644 cgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcg 703 ||| ||||| |||| ||||| ||||| |||||||| || |||||||| | | ||| Sbjct: 514 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 455 Query: 704 agtcaaatagatactcgtagcagacaggggcagttttgatgcat 747 |||| ||||||||||| ||||||| |||||||| |||||||| Sbjct: 454 agtcgaatagatactccatgcagaca-gggcagttgtgatgcat 412
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 111 bits (56), Expect = 3e-21 Identities = 198/244 (81%), Gaps = 1/244 (0%) Strand = Plus / Minus Query: 508 cataccatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagc 567 |||||||| |||||||| |||| | ||||||| || | || || ||||| || || ||| Sbjct: 860 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctcttgatcaagc 801 Query: 568 ttctgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtgg 627 || ||||| |||| || |||||| || || |||| | |||||||||||| ||||| || Sbjct: 800 ttttgccatgcatgggacatgtcacaagcagacctcaggcagaccgggcaagagaattgt 741 Query: 628 tgatgaaccctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacg 687 ||||| |||||||||| ||||| |||| |||||||||||| |||||||||||| | Sbjct: 740 tgatgggatctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgca 681 Query: 688 ctgatgtccatggtcgagtcaaatagatactcgtagcagacaggggcagttttgatgcat 747 |||||||| | || |||||||||||||||||| |||| ||| |||||||| || ||||| Sbjct: 680 ctgatgtcttttgttgagtcaaatagatactcgaagcataca-gggcagttatggtgcat 622 Query: 748 tgct 751 |||| Sbjct: 621 tgct 618 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479 |||||||||||||||||| ||||| ||||| || ||| | |||||| ||||| |||| Sbjct: 988 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 929 Query: 480 cgtcgccccgcagtcgttgcagaggatccata 511 |||| ||| ||||||||||| |||||||||| Sbjct: 928 tgtcgtcccacagtcgttgcataggatccata 897
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||||||| ||||| |||| |||||||||||| |||||||||||| | |||||||| Sbjct: 2533405 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 2533346 Query: 697 atggtcgagtcaaatagatact 718 | || |||||||||||||||| Sbjct: 2533345 tttgttgagtcaaatagatact 2533324 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479 |||||||||||||||||| ||||| ||||| || ||| | |||||| ||||| |||| Sbjct: 2533901 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2533842 Query: 480 cgtcgccccgcagtcgttgcagaggatccata 511 |||| ||| ||||||||||| |||||||||| Sbjct: 2533841 tgtcgtcccacagtcgttgcataggatccata 2533810
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Plus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||||||| ||||| |||| |||||||||||| |||||||||||| | |||||||| Sbjct: 136689 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 136748 Query: 697 atggtcgagtcaaatagatact 718 | || |||||||||||||||| Sbjct: 136749 tttgttgagtcaaatagatact 136770 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Plus Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479 |||||||||||||||||| ||||| ||||| || ||| | |||||| ||||| |||| Sbjct: 136193 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 136252 Query: 480 cgtcgccccgcagtcgttgcagaggatccata 511 |||| ||| ||||||||||| |||||||||| Sbjct: 136253 tgtcgtcccacagtcgttgcataggatccata 136284
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||||||| ||||| |||| |||||||||||| |||||||||||| | |||||||| Sbjct: 2533515 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 2533456 Query: 697 atggtcgagtcaaatagatact 718 | || |||||||||||||||| Sbjct: 2533455 tttgttgagtcaaatagatact 2533434 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479 |||||||||||||||||| ||||| ||||| || ||| | |||||| ||||| |||| Sbjct: 2534011 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2533952 Query: 480 cgtcgccccgcagtcgttgcagaggatccata 511 |||| ||| ||||||||||| |||||||||| Sbjct: 2533951 tgtcgtcccacagtcgttgcataggatccata 2533920
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 75.8 bits (38), Expect = 2e-10 Identities = 71/82 (86%) Strand = Plus / Minus Query: 637 ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696 |||||||||| ||||| |||| |||||||||||| |||||||||||| | |||||||| Sbjct: 105901 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 105842 Query: 697 atggtcgagtcaaatagatact 718 | || |||||||||||||||| Sbjct: 105841 tttgttgagtcaaatagatact 105820
>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding AT5G22920 mRNA, complete cds Length = 1262 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 886 ccgcagtcattgcagagaatccataccatctt 855
>dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protein, complete cds, clone: RAFL21-69-N21 Length = 493 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 224 ccgcagtcattgcagagaatccataccatctt 193
>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds Length = 1183 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 885 ccgcagtcattgcagagaatccataccatctt 854
>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA, complete cds Length = 876 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 734 ccgcagtcattgcagagaatccataccatctt 703
>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence Length = 1145 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 885 ccgcagtcattgcagagaatccataccatctt 854
>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds Length = 876 Score = 48.1 bits (24), Expect = 0.042 Identities = 30/32 (93%) Strand = Plus / Minus Query: 487 ccgcagtcgttgcagaggatccataccatctt 518 |||||||| |||||||| |||||||||||||| Sbjct: 734 ccgcagtcattgcagagaatccataccatctt 703
>gb|AF049930.1|AF049930 Petunia x hybrida PGPD14 (PGPD14) mRNA, complete cds Length = 1620 Score = 46.1 bits (23), Expect = 0.17 Identities = 65/79 (82%) Strand = Plus / Minus Query: 485 ccccgcagtcgttgcagaggatccataccatcttcttctggtagaactctggcatgggtg 544 |||| ||||| ||||| |||||||| |||||||| || ||||| | || ||||| |||| Sbjct: 926 ccccacagtcattgcaaaggatccaaaccatcttgttttggtacatttcaggcataggtg 867 Query: 545 tggcggcgacctcctggtc 563 ||| || ||||||||||| Sbjct: 866 tggatgcaacctcctggtc 848
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 546 ggcggcgacctcctggtcgagc 567 |||||||||||||||||||||| Sbjct: 498794 ggcggcgacctcctggtcgagc 498815
>gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome 15, complete sequence Length = 197376 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Minus Query: 507 ccataccatcttcttctggtagaact 532 ||||||||||||||||||| |||||| Sbjct: 193091 ccataccatcttcttctggaagaact 193066
>gb|AC157602.8| Mus musculus chromosome 15 clone RP23-104H10, complete sequence Length = 211648 Score = 44.1 bits (22), Expect = 0.66 Identities = 25/26 (96%) Strand = Plus / Minus Query: 507 ccataccatcttcttctggtagaact 532 ||||||||||||||||||| |||||| Sbjct: 2432 ccataccatcttcttctggaagaact 2407
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 113997 tcatgtcgcaggccgaccgcg 114017
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 591 gcaggccgaccgcgagcagaccggg 615 ||||||||||||||||||| ||||| Sbjct: 3051238 gcaggccgaccgcgagcaggccggg 3051214
>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, section 292 of 469 of the complete genome Length = 10174 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 cggtggccttgctgtcggcgacggc 197 |||||||||||||||||||| |||| Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 24045508 tcatgtcgcaggccgaccgcg 24045528
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 ccgatttattcaaccgcagcg 137 ||||||||||||||||||||| Sbjct: 56000 ccgatttattcaaccgcagcg 55980
>ref|XM_320050.2| Anopheles gambiae str. PEST ENSANGP00000012255 (ENSANGG00000009766), partial mRNA Length = 759 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 534 tggcatgggtgtggcggcgacctcc 558 |||||||||||||||||| |||||| Sbjct: 591 tggcatgggtgtggcggccacctcc 567
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147503 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 584 tcatgtcgcaggccgaccgcg 604 ||||||||||||||||||||| Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,970,222 Number of Sequences: 3902068 Number of extensions: 4970222 Number of successful extensions: 96938 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96396 Number of HSP's gapped (non-prelim): 527 length of query: 751 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 728 effective length of database: 17,143,297,704 effective search space: 12480320728512 effective search space used: 12480320728512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)