ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative... 349 8e-93
2dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 8e-93
3dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 2e-90
4gb|AY105408.1| Zea mays PCO132099 mRNA sequence 248 2e-62
5gb|BT016752.1| Zea mays clone Contig585 mRNA sequence 240 6e-60
6dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
7dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 2e-35
8gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 127 6e-26
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 127 6e-26
11gb|AY365035.1| Zea mays pollen germination-related protein-like ... 119 1e-23
12ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predic... 111 3e-21
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 76 2e-10
14gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 76 2e-10
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
16gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 76 2e-10
17ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ ... 48 0.042
18dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protein, co... 48 0.042
19gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, com... 48 0.042
20gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (... 48 0.042
21gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete s... 48 0.042
22gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, com... 48 0.042
23gb|AF049930.1|AF049930 Petunia x hybrida PGPD14 (PGPD14) mRNA, c... 46 0.17
24gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.66
25gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome... 44 0.66
26gb|AC157602.8| Mus musculus chromosome 15 clone RP23-104H10, com... 44 0.66
27gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.6
28emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 2.6
29gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 2.6
30dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
32dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
33dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 2.6
34ref|XM_320050.2| Anopheles gambiae str. PEST ENSANGP00000012255 ... 42 2.6
35gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.6
36gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.6
37emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 42 2.6
38emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.6

>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein
           (pollen germination related protein) (OSJNBa0018F16.5),
           mRNA
          Length = 1263

 Score =  349 bits (176), Expect = 8e-93
 Identities = 300/340 (88%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
           ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||||  |
Sbjct: 895 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 836

                                                                       
Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531
           ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 835 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 776

                                                                       
Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591
           || ||||| || || ||||| ||||||| ||||||||||| |||||| || | |||||||
Sbjct: 775 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 716

                                                                       
Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651
           ||||||||||| ||||| |||||||| | |||||| |||||  | |||||| ||||||||
Sbjct: 715 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 656

                                                                       
Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711
           || |||| |||||||||||||||||||||||  |||||||||||| | ||||||||||||
Sbjct: 655 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 596

                                                   
Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751
           || |||||| |||||||| || ||||| ||||||||||||
Sbjct: 595 aggtactcgaagcagaca-ggacagttgtgatgcattgct 557



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>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full
           insert sequence
          Length = 1283

 Score =  349 bits (176), Expect = 8e-93
 Identities = 300/340 (88%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
           ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||||  |
Sbjct: 909 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 850

                                                                       
Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531
           ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 849 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 790

                                                                       
Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591
           || ||||| || || ||||| ||||||| ||||||||||| |||||| || | |||||||
Sbjct: 789 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 730

                                                                       
Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651
           ||||||||||| ||||| |||||||| | |||||| |||||  | |||||| ||||||||
Sbjct: 729 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 670

                                                                       
Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711
           || |||| |||||||||||||||||||||||  |||||||||||| | ||||||||||||
Sbjct: 669 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 610

                                                   
Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751
           || |||||| |||||||| || ||||| ||||||||||||
Sbjct: 609 aggtactcgaagcagaca-ggacagttgtgatgcattgct 571



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>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full
           insert sequence
          Length = 1284

 Score =  341 bits (172), Expect = 2e-90
 Identities = 299/340 (87%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 412 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
           ||||||| ||||||||| |||||||| ||||| |||||  |||||||||||||||||  |
Sbjct: 905 gtctcccgggtgttgtaggagctgcatccggggcacttccgcgccaggacgtggaagttc 846

                                                                       
Query: 472 acgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaac 531
           ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 845 acgttcgacgtcgcgccgcagtcgttgcagaggatccatatcatcttcttctggtagaac 786

                                                                       
Query: 532 tctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcg 591
           || ||||| || || ||||| ||||||| ||||||||||| |||||| || | |||||||
Sbjct: 785 tccggcatcggcgtcgcggccacctcctcgtcgagcttcttccacgcgtccgacatgtcg 726

                                                                       
Query: 592 caggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcagg 651
           ||||||||||| ||||| |||||||| | |||||| |||||  | |||||| ||||||||
Sbjct: 725 caggccgaccgtgagcacaccgggcaagcgaagtgatgatgcgctctcatcacgttcagg 666

                                                                       
Query: 652 cactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaat 711
           || |||| |||||||||||||||||||||||  |||||||||||| | ||||||||||||
Sbjct: 665 cattccagatggatcgtgtgcccgcagtgcaagacgctgatgtccttcgtcgagtcaaat 606

                                                   
Query: 712 agatactcgtagcagacaggggcagttttgatgcattgct 751
           || |||||| |||||||| || ||||| ||||||||||||
Sbjct: 605 aggtactcgaagcagaca-ggacagttgtgatgcattgct 567



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>gb|AY105408.1| Zea mays PCO132099 mRNA sequence
          Length = 795

 Score =  248 bits (125), Expect = 2e-62
 Identities = 291/345 (84%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 407 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 466
           |||||||||||| ||||||||| ||||||||| |||| ||||| ||| |||| |||||||
Sbjct: 585 ccctcgtctcccgggtgttgtacgagctgcacgcggggcacttgtgccccagcacgtgga 526

                                                                       
Query: 467 agcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggt 526
           | ||||||||||| ||||| | |||||||||||| |||||||| ||||| | ||||||||
Sbjct: 525 accgcacgctcgaggtcgcgctgcagtcgttgcacaggatccacaccatgtgcttctggt 466

                                                                       
Query: 527 agaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtca 586
           |||  || ||||| || ||||| |||||||||| |||||||||| |||| |   | | ||
Sbjct: 465 agatgtcaggcatcggcgtggccgcgacctcctcgtcgagcttccgccatgtggccgaca 406

                                                                       
Query: 587 tgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgt 646
           |||||||||| |||| |||||| || ||||| |||||||| || ||  | ||||||||||
Sbjct: 405 tgtcgcaggcggacctcgagcacactgggcatgagaagtgatggtgtgctctcatctcgt 346

                                                                       
Query: 647 tcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagt 706
           ||| ||||||||||||||| || ||||| || ||||| |||||||||||| | || ||||
Sbjct: 345 tcatgcactccaaatggatggtatgcccacattgcagcacgctgatgtccttcgtggagt 286

                                                        
Query: 707 caaatagatactcgtagcagacaggggcagttttgatgcattgct 751
           | || ||||||||  ||||||| ||||||||| ||||||||||||
Sbjct: 285 cgaacagatactcaaagcagac-ggggcagttgtgatgcattgct 242



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>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence
          Length = 1421

 Score =  240 bits (121), Expect = 6e-60
 Identities = 290/345 (84%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                        
Query: 407  ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 466
            |||||||||||| ||||||||| || |||||| |||| ||||| ||| |||| |||||||
Sbjct: 1085 ccctcgtctcccgggtgttgtacgaactgcacgcggggcacttgtgccccagcacgtgga 1026

                                                                        
Query: 467  agcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttctggt 526
            | ||||||||||| ||||| | |||||||||||| |||||||| ||||| | ||||||||
Sbjct: 1025 accgcacgctcgaggtcgcgctgcagtcgttgcacaggatccacaccatgtgcttctggt 966

                                                                        
Query: 527  agaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtca 586
            |||  || ||||| || ||||| |||||||||| |||||| ||| ||||||   | | ||
Sbjct: 965  agatgtcaggcatcggcgtggccgcgacctcctcgtcgagtttccgccacgtggccgaca 906

                                                                        
Query: 587  tgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgt 646
            |||||||||| |||| |||||| || ||||| |||||||| || ||  | ||||||||||
Sbjct: 905  tgtcgcaggcggacctcgagcacactgggcatgagaagtgatggtgtgctctcatctcgt 846

                                                                        
Query: 647  tcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagt 706
            ||| ||||||||||||||| || ||||| || ||||| || ||||||||| | || ||||
Sbjct: 845  tcatgcactccaaatggatggtatgcccacattgcagcacactgatgtcctttgtggagt 786

                                                         
Query: 707  caaatagatactcgtagcagacaggggcagttttgatgcattgct 751
            | || ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct: 785  cgaacagatactcgaagcagac-ggggcagttgtgatgcattgct 742



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>dbj|AK072693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142C17, full
           insert sequence
          Length = 1095

 Score =  232 bits (117), Expect = 1e-57
 Identities = 211/241 (87%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 511 accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570
           ||||||||||||||||||||||| ||||| || || ||||| ||||||| ||||||||||
Sbjct: 807 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 748

                                                                       
Query: 571 tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtga 630
           | |||||| || | |||||||||||||||||| ||||| |||||||| | |||||| |||
Sbjct: 747 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggcaagcgaagtgatga 688

                                                                       
Query: 631 tgaaccctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctg 690
           ||  | |||||| |||||||||| |||| |||||||||||||||||||||||  ||||||
Sbjct: 687 tgcgctctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctg 628

                                                                       
Query: 691 atgtccatggtcgagtcaaatagatactcgtagcagacaggggcagttttgatgcattgc 750
           |||||| | |||||||||||||| |||||| |||||||| || ||||| |||||||||||
Sbjct: 627 atgtccttcgtcgagtcaaataggtactcgaagcagaca-ggacagttgtgatgcattgc 569

            
Query: 751 t 751
           |
Sbjct: 568 t 568



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>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full
            insert sequence
          Length = 2604

 Score =  159 bits (80), Expect = 2e-35
 Identities = 270/332 (81%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                        
Query: 420  ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479
            |||||||||||||||||| ||||| ||||| ||  |||  | ||||||  ||||| ||||
Sbjct: 2252 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2193

                                                                        
Query: 480  cgtcgccccgcagtcgttgcagaggatccataccatcttcttctggtagaactctggcat 539
             |||| ||| ||||||||||| |||||||||| ||| |||||||| |||| | |||||||
Sbjct: 2192 tgtcgtcccacagtcgttgcataggatccatatcattttcttctgatagatcactggcat 2133

                                                                        
Query: 540  gggtgtggcggcgacctcctggtcgagcttctgccacgcatcggtcatgtcgcaggccga 599
             || |  || || ||||| || || ||||| ||||| |||| || |||||| || || ||
Sbjct: 2132 cggcgatgctgcaacctcttgatcaagcttttgccatgcatgggacatgtcacaagcaga 2073

                                                                        
Query: 600  ccgcgagcagaccgggcacgagaagtggtgatgaaccctcatctcgttcaggcactccaa 659
            || |  |||||||||||| ||||| || |||||    ||||||||||  ||||| |||| 
Sbjct: 2072 cctcaggcagaccgggcaagagaattgttgatgggatctcatctcgtataggcattccag 2013

                                                                        
Query: 660  atggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcgagtcaaatagatactc 719
            |||||||||||| |||||||||||| | ||||||||  | || |||||||||||||||||
Sbjct: 2012 atggatcgtgtgtccgcagtgcagtgcactgatgtcttttgttgagtcaaatagatactc 1953

                                            
Query: 720  gtagcagacaggggcagttttgatgcattgct 751
            | |||| ||| |||||||| || |||||||||
Sbjct: 1952 gaagcataca-gggcagttatggtgcattgct 1922



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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  127 bits (64), Expect = 6e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                         
Query: 412   gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
             ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||||  |
Sbjct: 70068 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 70127

                                                     
Query: 472   acgctcgacgtcgccccgcagtcgttgcagaggatccata 511
             ||| |||||||||| |||||||||||||||||||||||||
Sbjct: 70128 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 70167



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                         
Query: 511   accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570
             ||||||||||||||||||||||| ||||| || || ||||| ||||||| ||||||||||
Sbjct: 70526 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 70585

                                                            
Query: 571   tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617
             | |||||| || | |||||||||||||||||| ||||| ||||||||
Sbjct: 70586 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 70632



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                         
Query: 637   ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
             |||||| |||||||||| |||| |||||||||||||||||||||||  ||||||||||||
Sbjct: 70734 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 70793

                                   
Query: 697   atggtcgagtcaaatagatact 718
              | |||||||||||||| ||||
Sbjct: 70794 ttcgtcgagtcaaataggtact 70815



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 6e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                            
Query: 412      gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
                ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||||  |
Sbjct: 16191179 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16191238

                                                        
Query: 472      acgctcgacgtcgccccgcagtcgttgcagaggatccata 511
                ||| |||||||||| |||||||||||||||||||||||||
Sbjct: 16191239 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16191278



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                            
Query: 511      accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570
                ||||||||||||||||||||||| ||||| || || ||||| ||||||| ||||||||||
Sbjct: 16191637 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 16191696

                                                               
Query: 571      tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617
                | |||||| || | |||||||||||||||||| ||||| ||||||||
Sbjct: 16191697 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 16191743



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                            
Query: 637      ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
                |||||| |||||||||| |||| |||||||||||||||||||||||  ||||||||||||
Sbjct: 16191845 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 16191904

                                      
Query: 697      atggtcgagtcaaatagatact 718
                 | |||||||||||||| ||||
Sbjct: 16191905 ttcgtcgagtcaaataggtact 16191926



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 6e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                            
Query: 412      gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgc 471
                ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||||  |
Sbjct: 16199420 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtggaagttc 16199479

                                                        
Query: 472      acgctcgacgtcgccccgcagtcgttgcagaggatccata 511
                ||| |||||||||| |||||||||||||||||||||||||
Sbjct: 16199480 acgttcgacgtcgcgccgcagtcgttgcagaggatccata 16199519



 Score =  117 bits (59), Expect = 5e-23
 Identities = 95/107 (88%)
 Strand = Plus / Plus

                                                                            
Query: 511      accatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttc 570
                ||||||||||||||||||||||| ||||| || || ||||| ||||||| ||||||||||
Sbjct: 16199878 accatcttcttctggtagaactccggcatcggcgtcgcggccacctcctcgtcgagcttc 16199937

                                                               
Query: 571      tgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggca 617
                | |||||| || | |||||||||||||||||| ||||| ||||||||
Sbjct: 16199938 ttccacgcgtccgacatgtcgcaggccgaccgtgagcacaccgggca 16199984



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Plus

                                                                            
Query: 637      ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
                |||||| |||||||||| |||| |||||||||||||||||||||||  ||||||||||||
Sbjct: 16200086 ctcatcacgttcaggcattccagatggatcgtgtgcccgcagtgcaagacgctgatgtcc 16200145

                                      
Query: 697      atggtcgagtcaaatagatact 718
                 | |||||||||||||| ||||
Sbjct: 16200146 ttcgtcgagtcaaataggtact 16200167



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>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence
          Length = 1106

 Score =  119 bits (60), Expect = 1e-23
 Identities = 274/344 (79%), Gaps = 1/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 404 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 463
           |||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 754 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 695

                                                                       
Query: 464 ggaagcgcacgctcgacgtcgccccgcagtcgttgcagaggatccataccatcttcttct 523
           ||||  ||||| | |||||| | || ||||||||||| ||||||| ||||||||||||||
Sbjct: 694 ggaactgcacgttggacgtcacgccacagtcgttgcaaaggatccgtaccatcttcttct 635

                                                                       
Query: 524 ggtagaactctggcatgggtgtggcggcgacctcctggtcgagcttctgccacgcatcgg 583
           | |||| | ||||||| || |  || || |||| ||| || ||||| |||||    ||||
Sbjct: 634 gatagatcgctggcatcggggacgctgcaacctgctgatccagcttttgccagatgtcgg 575

                                                                       
Query: 584 tcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtggtgatgaaccctcatct 643
            ||||| |||||| |||| |  ||| |||||||| || || || || ||  | |||||||
Sbjct: 574 acatgttgcaggcagacctcaggcacaccgggcatgaaaactgctggtgcgctctcatct 515

                                                                       
Query: 644 cgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtccatggtcg 703
           |||  ||||| ||||  ||||| ||||| |||||||| || ||||||||  |  |  |||
Sbjct: 514 cgtaaaggcattccaggtggatggtgtgtccgcagtggagcacgctgatagctttcatcg 455

                                                       
Query: 704 agtcaaatagatactcgtagcagacaggggcagttttgatgcat 747
           |||| |||||||||||   ||||||| |||||||| ||||||||
Sbjct: 454 agtcgaatagatactccatgcagaca-gggcagttgtgatgcat 412



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>ref|XM_470211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score =  111 bits (56), Expect = 3e-21
 Identities = 198/244 (81%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 508 cataccatcttcttctggtagaactctggcatgggtgtggcggcgacctcctggtcgagc 567
           |||||||| |||||||| |||| | ||||||| || |  || || ||||| || || |||
Sbjct: 860 cataccattttcttctgatagatcactggcatcggcgatgctgcaacctcttgatcaagc 801

                                                                       
Query: 568 ttctgccacgcatcggtcatgtcgcaggccgaccgcgagcagaccgggcacgagaagtgg 627
           || ||||| |||| || |||||| || || |||| |  |||||||||||| ||||| || 
Sbjct: 800 ttttgccatgcatgggacatgtcacaagcagacctcaggcagaccgggcaagagaattgt 741

                                                                       
Query: 628 tgatgaaccctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacg 687
           |||||    ||||||||||  ||||| |||| |||||||||||| |||||||||||| | 
Sbjct: 740 tgatgggatctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgca 681

                                                                       
Query: 688 ctgatgtccatggtcgagtcaaatagatactcgtagcagacaggggcagttttgatgcat 747
           ||||||||  | || |||||||||||||||||| |||| ||| |||||||| || |||||
Sbjct: 680 ctgatgtcttttgttgagtcaaatagatactcgaagcataca-gggcagttatggtgcat 622

               
Query: 748 tgct 751
           ||||
Sbjct: 621 tgct 618



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 420 ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479
           |||||||||||||||||| ||||| ||||| ||  |||  | ||||||  ||||| ||||
Sbjct: 988 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 929

                                           
Query: 480 cgtcgccccgcagtcgttgcagaggatccata 511
            |||| ||| ||||||||||| ||||||||||
Sbjct: 928 tgtcgtcccacagtcgttgcataggatccata 897



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 637     ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
               ||||||||||  ||||| |||| |||||||||||| |||||||||||| | |||||||| 
Sbjct: 2533405 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 2533346

                                     
Query: 697     atggtcgagtcaaatagatact 718
                | || ||||||||||||||||
Sbjct: 2533345 tttgttgagtcaaatagatact 2533324



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                           
Query: 420     ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479
               |||||||||||||||||| ||||| ||||| ||  |||  | ||||||  ||||| ||||
Sbjct: 2533901 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2533842

                                               
Query: 480     cgtcgccccgcagtcgttgcagaggatccata 511
                |||| ||| ||||||||||| ||||||||||
Sbjct: 2533841 tgtcgtcccacagtcgttgcataggatccata 2533810



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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                          
Query: 637    ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
              ||||||||||  ||||| |||| |||||||||||| |||||||||||| | |||||||| 
Sbjct: 136689 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 136748

                                    
Query: 697    atggtcgagtcaaatagatact 718
               | || ||||||||||||||||
Sbjct: 136749 tttgttgagtcaaatagatact 136770



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                          
Query: 420    ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479
              |||||||||||||||||| ||||| ||||| ||  |||  | ||||||  ||||| ||||
Sbjct: 136193 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 136252

                                              
Query: 480    cgtcgccccgcagtcgttgcagaggatccata 511
               |||| ||| ||||||||||| ||||||||||
Sbjct: 136253 tgtcgtcccacagtcgttgcataggatccata 136284



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                           
Query: 637     ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
               ||||||||||  ||||| |||| |||||||||||| |||||||||||| | |||||||| 
Sbjct: 2533515 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 2533456

                                     
Query: 697     atggtcgagtcaaatagatact 718
                | || ||||||||||||||||
Sbjct: 2533455 tttgttgagtcaaatagatact 2533434



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                           
Query: 420     ggtgttgtaagagctgcacccgggacacttttgcgccaggacgtggaagcgcacgctcga 479
               |||||||||||||||||| ||||| ||||| ||  |||  | ||||||  ||||| ||||
Sbjct: 2534011 ggtgttgtaagagctgcatccggggcacttgtgtcccaatatgtggaattgcacgttcga 2533952

                                               
Query: 480     cgtcgccccgcagtcgttgcagaggatccata 511
                |||| ||| ||||||||||| ||||||||||
Sbjct: 2533951 tgtcgtcccacagtcgttgcataggatccata 2533920



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>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
              complete sequence
          Length = 106057

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                          
Query: 637    ctcatctcgttcaggcactccaaatggatcgtgtgcccgcagtgcagtacgctgatgtcc 696
              ||||||||||  ||||| |||| |||||||||||| |||||||||||| | |||||||| 
Sbjct: 105901 ctcatctcgtataggcattccagatggatcgtgtgtccgcagtgcagtgcactgatgtct 105842

                                    
Query: 697    atggtcgagtcaaatagatact 718
               | || ||||||||||||||||
Sbjct: 105841 tttgttgagtcaaatagatact 105820



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>ref|NM_122198.2| Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
           AT5G22920 mRNA, complete cds
          Length = 1262

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 886 ccgcagtcattgcagagaatccataccatctt 855



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>dbj|AK220658.1| Arabidopsis thaliana mRNA for PGPD14 protein, complete cds, clone:
           RAFL21-69-N21
          Length = 493

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 224 ccgcagtcattgcagagaatccataccatctt 193



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>gb|AY052362.1| Arabidopsis thaliana AT5g22920/MRN17_15 mRNA, complete cds
          Length = 1183

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 885 ccgcagtcattgcagagaatccataccatctt 854



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>gb|DQ059131.1| Arabidopsis thaliana RING finger family protein (At5g22920) mRNA,
           complete cds
          Length = 876

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 734 ccgcagtcattgcagagaatccataccatctt 703



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>gb|AY088138.1| Arabidopsis thaliana clone 41666 mRNA, complete sequence
          Length = 1145

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 885 ccgcagtcattgcagagaatccataccatctt 854



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>gb|BT002635.1| Arabidopsis thaliana At5g22920/MRN17_15 gene, complete cds
          Length = 876

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 487 ccgcagtcgttgcagaggatccataccatctt 518
           |||||||| |||||||| ||||||||||||||
Sbjct: 734 ccgcagtcattgcagagaatccataccatctt 703



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>gb|AF049930.1|AF049930 Petunia x hybrida PGPD14 (PGPD14) mRNA, complete cds
          Length = 1620

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                       
Query: 485 ccccgcagtcgttgcagaggatccataccatcttcttctggtagaactctggcatgggtg 544
           |||| ||||| ||||| |||||||| |||||||| || ||||| |  || ||||| ||||
Sbjct: 926 ccccacagtcattgcaaaggatccaaaccatcttgttttggtacatttcaggcataggtg 867

                              
Query: 545 tggcggcgacctcctggtc 563
           |||  || |||||||||||
Sbjct: 866 tggatgcaacctcctggtc 848



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 546    ggcggcgacctcctggtcgagc 567
              ||||||||||||||||||||||
Sbjct: 498794 ggcggcgacctcctggtcgagc 498815



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>gb|AC125528.4| Mus musculus BAC clone RP23-365I9 from chromosome 15, complete sequence
          Length = 197376

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 507    ccataccatcttcttctggtagaact 532
              ||||||||||||||||||| ||||||
Sbjct: 193091 ccataccatcttcttctggaagaact 193066



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>gb|AC157602.8| Mus musculus chromosome 15 clone RP23-104H10, complete sequence
          Length = 211648

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 507  ccataccatcttcttctggtagaact 532
            ||||||||||||||||||| ||||||
Sbjct: 2432 ccataccatcttcttctggaagaact 2407



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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06,
              complete sequence
          Length = 187651

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 584    tcatgtcgcaggccgaccgcg 604
              |||||||||||||||||||||
Sbjct: 113997 tcatgtcgcaggccgaccgcg 114017



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 591     gcaggccgaccgcgagcagaccggg 615
               ||||||||||||||||||| |||||
Sbjct: 3051238 gcaggccgaccgcgagcaggccggg 3051214



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>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306,  section 292 of 469 of the
            complete genome
          Length = 10174

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 173  cggtggccttgctgtcggcgacggc 197
            |||||||||||||||||||| ||||
Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
            complete sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
            complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 584      tcatgtcgcaggccgaccgcg 604
                |||||||||||||||||||||
Sbjct: 24045508 tcatgtcgcaggccgaccgcg 24045528



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 117   ccgatttattcaaccgcagcg 137
             |||||||||||||||||||||
Sbjct: 56000 ccgatttattcaaccgcagcg 55980



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>ref|XM_320050.2| Anopheles gambiae str. PEST ENSANGP00000012255
           (ENSANGG00000009766), partial mRNA
          Length = 759

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 534 tggcatgggtgtggcggcgacctcc 558
           |||||||||||||||||| ||||||
Sbjct: 591 tggcatgggtgtggcggccacctcc 567



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete
            sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete
            sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 8260 tcatgtcgcaggccgaccgcg 8240



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>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 131346

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 584  tcatgtcgcaggccgaccgcg 604
            |||||||||||||||||||||
Sbjct: 6638 tcatgtcgcaggccgaccgcg 6618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,970,222
Number of Sequences: 3902068
Number of extensions: 4970222
Number of successful extensions: 96938
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96396
Number of HSP's gapped (non-prelim): 527
length of query: 751
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 728
effective length of database: 17,143,297,704
effective search space: 12480320728512
effective search space used: 12480320728512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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