ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrin... 35 0.037
2ZNF80_MACMU (P51505) Zinc finger protein 80 28 5.9
3ZNF80_PONPY (P51507) Zinc finger protein 80 28 5.9
4ZNF80_PANTR (P51506) Zinc finger protein 80 28 5.9
5ZNF80_GORGO (P51503) Zinc finger protein 80 28 5.9

>TIP22_ORYSA (Q5Z6F0) Probable aquaporin TIP2.2 (Tonoplast intrinsic protein|
           2.2) (OsTIP2.2)
          Length = 248

 Score = 35.4 bits (80), Expect = 0.037
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 301 NIXIXWXXXXXXXXXXXIVXRYLYMCXNHTPVASNDY 191
           NI I W           +V RY+YMC +H PVAS+++
Sbjct: 212 NIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVASSEF 248



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>ZNF80_MACMU (P51505) Zinc finger protein 80|
          Length = 293

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 238 YLYMCXNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 101
           Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 248 YSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 293



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>ZNF80_PONPY (P51507) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 238 YLYMCXNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 101
           Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 228 YSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_PANTR (P51506) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 238 YLYMCXNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 101
           Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 228 YSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273



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>ZNF80_GORGO (P51503) Zinc finger protein 80|
          Length = 273

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 238 YLYMCXNHTPVASNDY*AIHVKGRSVFGFHDAFGNIKKCVRGGQNV 101
           Y Y    HT   + +     ++ R  FG+H AF    K   GG+N+
Sbjct: 228 YSYSLTRHTRSHTGEKPYECLEHRKAFGYHSAFAQQSKIHSGGKNL 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,799,766
Number of Sequences: 219361
Number of extensions: 575294
Number of successful extensions: 1067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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