ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasdn13 |
|---|---|
| Clone Library Name | barley_pub |
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 100 bits (248), Expect = 5e-21 Identities = 49/85 (57%), Positives = 60/85 (70%) Frame = -2 Query: 604 AKALITAQPADIAGPSEAAMESPKGPSRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHE 425 A AL TA PA +A S +RCS CRKRVGLTGF CRCG+L+C HRYSD+H Sbjct: 86 ASALATA-PAPVAKTSAV--------NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHG 136 Query: 424 CKFDYRAAAMDAIAKANPVVKAEKL 350 C +DY++AA DAIA+ NPVV+A K+ Sbjct: 137 CSYDYKSAARDAIARDNPVVRAAKI 161
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 99.8 bits (247), Expect = 7e-21 Identities = 44/77 (57%), Positives = 60/77 (77%), Gaps = 2/77 (2%) Frame = -2 Query: 565 GPSEAA-MESPKGPS-RCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMD 392 G S AA ++ PK + RC +C K+VG+TGF CRCG+ +C THRY + HEC+FD++ A + Sbjct: 92 GDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVARE 151 Query: 391 AIAKANPVVKAEKLDKI 341 AIAKANPVVKA+K+D+I Sbjct: 152 AIAKANPVVKADKVDRI 168
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 98.6 bits (244), Expect = 1e-20 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 6/94 (6%) Frame = -2 Query: 604 AKALITAQPADIAGPS-----EAAMESPKGP-SRCSTCRKRVGLTGFNCRCGNLYCATHR 443 ++ ++T ++ PS E A E PK +RC CRK+VGLTGF+CRCGNL+C HR Sbjct: 120 SEPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR 179 Query: 442 YSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 341 YSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 180 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 98.6 bits (244), Expect = 1e-20 Identities = 48/94 (51%), Positives = 62/94 (65%), Gaps = 6/94 (6%) Frame = -2 Query: 604 AKALITAQPADIAGPS-----EAAMESPKGP-SRCSTCRKRVGLTGFNCRCGNLYCATHR 443 ++ ++T ++ PS E A E PK +RC CRK+VGLTGF+CRCGNL+C HR Sbjct: 120 SEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR 179 Query: 442 YSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 341 YSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 180 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 97.1 bits (240), Expect = 4e-20 Identities = 40/89 (44%), Positives = 61/89 (68%), Gaps = 4/89 (4%) Frame = -2 Query: 595 LITAQPADIAGPSEAAMESPKGP----SRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKH 428 ++TA+P+ + +E P P +RC +C K+VG+ GF C+CG+ +C +HRY +KH Sbjct: 87 VVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKH 146 Query: 427 ECKFDYRAAAMDAIAKANPVVKAEKLDKI 341 EC FD++ DAIAKANP+VKA+K+ +I Sbjct: 147 ECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 93.6 bits (231), Expect = 5e-19 Identities = 39/66 (59%), Positives = 50/66 (75%) Frame = -2 Query: 538 PKGPSRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKA 359 P+ P+RC+ CRKRVGLTGF CRCG +C +HRY + H C FD+++A + IAKANP+V A Sbjct: 96 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIA 155 Query: 358 EKLDKI 341 KL KI Sbjct: 156 AKLQKI 161
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -2 Query: 562 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 392 P E+ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 143 PEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 199 Query: 391 AIAKANPVVKAEKLDKI*ERVGKT 320 + ++K KLD+ +VG++ Sbjct: 200 --GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.0 bits (110), Expect = 5e-05 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -2 Query: 562 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 392 P E+ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 143 PEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 199 Query: 391 AIAKANPVVKAEKLDKI*ERVGKT 320 + ++K KLD+ +VG++ Sbjct: 200 --GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -2 Query: 562 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 392 P ++ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 142 PDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 198 Query: 391 AIAKANPVVKAEKLDKI*ERVGKT 320 + ++K KLD+ +VG++ Sbjct: 199 --GREEAIMKMVKLDR---KVGRS 217
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = -2 Query: 556 EAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMDAI 386 E + K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 145 ETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR----- 199 Query: 385 AKANPVVKAEKLDKI*ERVGKT 320 + ++K KLD+ +VG++ Sbjct: 200 GREEAIMKMVKLDR---KVGRS 218
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 35.0 bits (79), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 288 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 172 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 35.0 bits (79), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 288 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 172 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 35.0 bits (79), Expect = 0.20 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -3 Query: 288 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 172 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)| (Protocadherin-22) (Protocadherin on the Y chromosome) (PCDH-Y) (Protocadherin prostate cancer) (Protocadherin-PC) Length = 1340 Score = 32.3 bits (72), Expect = 1.3 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +3 Query: 516 LHRLGPLGLSMAASLGPAMSAGCAVISAFALNVSNCHRCAASSKVLF 656 + R+G L +S ++SL P + ++S +N +NCH+C S +F Sbjct: 1 MFRVGFLIISSSSSLSPLL-----LVSVVRVNTTNCHKCLLSGTYIF 42
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 31.6 bits (70), Expect = 2.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -3 Query: 288 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 172 S C+ A L F+H+G C L C A+V + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMHNPEG 288
>SNX18_MOUSE (Q91ZR2) Sorting nexin-18 (Sorting nexin-associated Golgi protein| 1) Length = 614 Score = 31.6 bits (70), Expect = 2.2 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -1 Query: 566 WSQRGGHGEPQRPKPVQHLQKEGR 495 WSQ GHGEPQ P+ + HL++ GR Sbjct: 208 WSQELGHGEPQ-PQSLLHLRQVGR 230
>PEP7_YEAST (P32609) Vacuolar segregation protein PEP7 (Protein VAC1) (Vacuolar| protein sorting 19) Length = 515 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = -2 Query: 535 KGPSRCSTCRKRVG--LTGFNCR-CGNLYCATH 446 KG S C TC + + + NCR CG LYC H Sbjct: 73 KGKSCCHTCGRTLNNNIGAINCRKCGKLYCRRH 105
>ECAR_ECHCA (Q90495) Ecarin precursor (EC 3.4.24.-)| Length = 616 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Frame = -2 Query: 511 CRKRVGLTG--FNC-----RCGNLYCATHRYSDKHECKFDYRAA 401 C K +G G F C +CG LYC + + CK DY A Sbjct: 542 CTKEIGYYGKRFPCAPQDVKCGRLYCLDNSFKKNMRCKNDYSYA 585
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 288 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 172 S C+ A L F+H+G C L C A++ + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNTDTFESMLNPEG 288
>RVXX_VIPLE (Q7T046) Coagulation factor X-activating enzyme heavy chain| precursor (EC 3.4.24.58) (VLFXA heavy chain) (Coagulation factor X-activating enzyme alpha-chain) [Contains: Coagulation factor X-activating enzyme heavy chain alternate form] Length = 612 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = -2 Query: 544 ESPKGPSRCSTCRKRVG----LTGFNCRCGNLYCATHRYSDKHECKFDYR 407 E+ KG S CRK G + +CG LYC + +K+ CK YR Sbjct: 530 ENQKG-SYYGYCRKENGRKIPCAPQDIKCGRLYCLDNSPGNKNPCKMHYR 578
>POLG_MVEV5 (P05769) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3434 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 622 QLLTFKAKALITAQPADIAGPSEAAMESPKGPSRC 518 +L TF+ K ++T DIA A+ +PKGP++C Sbjct: 127 KLSTFQGKIMMTVNATDIA--DVIAIPTPKGPNQC 159
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 8.3 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 312 PKSICATSSSCVFAALSFHHAGFCN 238 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>Y455_METJA (Q57897) Hypothetical protein MJ0455| Length = 193 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/79 (22%), Positives = 40/79 (50%) Frame = -2 Query: 523 RCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDK 344 +CS C K++ TG +C+ T + ++++ + + + A + A +A +K +L++ Sbjct: 2 KCSQCNKKLCYTGKDCKKD----ITQKIIEEYKKEENLKIAEVSAYIEATYYMKKTRLEE 57 Query: 343 I*ERVGKTEGPKINLRYLV 287 I E E KI + + + Sbjct: 58 IIEFCKLMEYKKIGIAFCI 76 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,784,822 Number of Sequences: 219361 Number of extensions: 1630963 Number of successful extensions: 4961 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4712 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4960 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
