ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZYX_MOUSE (Q62523) Zyxin 31 3.6
2Y040_HAEIN (P43929) Hypothetical protein HI0040 30 6.1
3IGA3_HAEIN (P45385) Immunoglobulin A1 protease precursor (EC 3.4... 30 7.9
4IGA1_HAEIN (P42782) Immunoglobulin A1 protease precursor (EC 3.4... 30 7.9

>ZYX_MOUSE (Q62523) Zyxin|
          Length = 564

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 449 PDWHIDSSPEIVHQLSRFIKYQLHISPQQTERVSPNVFSSASLE 318
           P W   SS +   Q  R  + QLH+ PQ    V P   SSA+ +
Sbjct: 199 PPWKTPSSSQPPPQPQRKPQVQLHVQPQAKPHVQPQPVSSANTQ 242



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>Y040_HAEIN (P43929) Hypothetical protein HI0040|
          Length = 258

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 611 DVYLMEHVLDDESEEKVLSALSEAGL----FTSGGLVREKVLFCSTENGRTSFVRQLEPD 444
           D YL+EH    + E+K+   + E  L    FT+     + + F   E+    F+ +LE +
Sbjct: 159 DTYLVEHSFHFDEEQKMFPFMDELSLGDYSFTTLQYSAQAIQF--NEDDEPYFLVKLEQE 216

Query: 443 WHIDSSPEIVHQLSRFIK 390
             +++S EI  Q+ RF K
Sbjct: 217 ISLENS-EIFEQVERFEK 233



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>IGA3_HAEIN (P45385) Immunoglobulin A1 protease precursor (EC 3.4.21.72) (IGA1|
            protease)
          Length = 1545

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 109  ISLSIAYGALQNKFSTSHNKTFTHNTRKTNCTIHQENKLNN 231
            + + + YG  Q+K  T+HN  F  +T +   T  +   L N
Sbjct: 1379 LGIDLGYGKFQSKLQTNHNAKFARHTAQFGLTAGKAFNLGN 1419



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>IGA1_HAEIN (P42782) Immunoglobulin A1 protease precursor (EC 3.4.21.72) (IGA1|
            protease)
          Length = 1541

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 109  ISLSIAYGALQNKFSTSHNKTFTHNTRKTNCTIHQENKLNN 231
            + + + YG  Q+K  T+HN  F  +T +   T  +   L N
Sbjct: 1375 LGIDLGYGKFQSKLQTNHNAKFARHTAQFGLTAGKAFNLGN 1415


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,352,625
Number of Sequences: 219361
Number of extensions: 1905727
Number of successful extensions: 5313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5309
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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