Clone Name | rbasdn09 |
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Clone Library Name | barley_pub |
>LRRC4_HUMAN (Q9HBW1) Leucine-rich repeat-containing protein 4 precursor (Brain| tumor-associated protein LRRC4) (NAG14) Length = 653 Score = 33.9 bits (76), Expect = 0.47 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 13/110 (11%) Frame = -3 Query: 409 MVPSGGFENLKLLRFL----APFVPLLSFPKNALPNLERLEL---------RFSMFEGLY 269 ++PSG FE L LR L P + S+ N +P+L RL+L FEGL+ Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 Query: 268 GLENLAELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRPRIIVDQYHG 119 NL L + D T + G+ GN+ P I +HG Sbjct: 197 ---NLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHG 240
>LRRC4_MOUSE (Q99PH1) Leucine-rich repeat-containing 4 protein precursor (Brain| tumor-associated protein MBAG1) Length = 652 Score = 33.9 bits (76), Expect = 0.47 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 13/110 (11%) Frame = -3 Query: 409 MVPSGGFENLKLLRFL----APFVPLLSFPKNALPNLERLEL---------RFSMFEGLY 269 ++PSG FE L LR L P + S+ N +P+L RL+L FEGL+ Sbjct: 136 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 195 Query: 268 GLENLAELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRPRIIVDQYHG 119 NL L + D T + G+ GN+ P I +HG Sbjct: 196 ---NLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHG 239
>DRL41_ARATH (Q9FKZ2) Probable disease resistance protein At5g66890| Length = 415 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Frame = -3 Query: 478 AAKQDPETIFIIEENKERSDGQIMVPSGGFENLKLLRFLAPFVPLLSFPKNALPNLERLE 299 A ++ + + II E + + NLK +RF + LL PK L +LE+L Sbjct: 175 ATMKELKVVIIINHGLEPAKLTNLSCLSSLPNLKRIRFEKVSISLLDIPKLGLKSLEKLS 234 Query: 298 LRF-SMFEGLYGLENLAE----LEEVHL 230 L F + + L LE+++E L+E+ + Sbjct: 235 LWFCHVVDALNELEDVSETLQSLQEIEI 262
>YCF2_OENHO (Q9MEF2) Protein ycf2| Length = 2280 Score = 30.4 bits (67), Expect = 5.2 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = -3 Query: 439 ENKERSDGQIMVPSGGFENLKLLRFLAPFVPLLSFPKNALPNLERLELRFSMFEG 275 + E SD + + S F KLL FL+ +P P ++R E+R S F+G Sbjct: 808 DRSEVSDQKKLAKSRSFVFSKLLLFLSNSLPFFFVSLGNTPPIQRSEIRVSEFKG 862
>PLCB3_RAT (Q99JE6) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 250 ELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRP 146 +L E+H + KA T+ L++G+A A EG RP Sbjct: 972 DLRELHKKHQRKAVALTRRLLDGLAQARAEGKCRP 1006
>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-3) (PLC-beta-3) Length = 1234 Score = 29.6 bits (65), Expect = 8.9 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 250 ELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRP 146 +L E+H + KA T+ L++G+A A EG RP Sbjct: 974 DLRELHKKHQRKAVALTRRLLDGLAQARAEGKCRP 1008 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,449,939 Number of Sequences: 219361 Number of extensions: 1669127 Number of successful extensions: 4641 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4641 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)