ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LRRC4_HUMAN (Q9HBW1) Leucine-rich repeat-containing protein 4 pr... 34 0.47
2LRRC4_MOUSE (Q99PH1) Leucine-rich repeat-containing 4 protein pr... 34 0.47
3DRL41_ARATH (Q9FKZ2) Probable disease resistance protein At5g66890 32 1.4
4YCF2_OENHO (Q9MEF2) Protein ycf2 30 5.2
5PLCB3_RAT (Q99JE6) 1-phosphatidylinositol-4,5-bisphosphate phosp... 30 8.9
6PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate pho... 30 8.9

>LRRC4_HUMAN (Q9HBW1) Leucine-rich repeat-containing protein 4 precursor (Brain|
           tumor-associated protein LRRC4) (NAG14)
          Length = 653

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
 Frame = -3

Query: 409 MVPSGGFENLKLLRFL----APFVPLLSFPKNALPNLERLEL---------RFSMFEGLY 269
           ++PSG FE L  LR L     P   + S+  N +P+L RL+L             FEGL+
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 268 GLENLAELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRPRIIVDQYHG 119
              NL  L      + D    T    + G+      GN+ P I    +HG
Sbjct: 197 ---NLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHG 240



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>LRRC4_MOUSE (Q99PH1) Leucine-rich repeat-containing 4 protein precursor (Brain|
           tumor-associated protein MBAG1)
          Length = 652

 Score = 33.9 bits (76), Expect = 0.47
 Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 13/110 (11%)
 Frame = -3

Query: 409 MVPSGGFENLKLLRFL----APFVPLLSFPKNALPNLERLEL---------RFSMFEGLY 269
           ++PSG FE L  LR L     P   + S+  N +P+L RL+L             FEGL+
Sbjct: 136 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 195

Query: 268 GLENLAELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRPRIIVDQYHG 119
              NL  L      + D    T    + G+      GN+ P I    +HG
Sbjct: 196 ---NLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHG 239



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>DRL41_ARATH (Q9FKZ2) Probable disease resistance protein At5g66890|
          Length = 415

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
 Frame = -3

Query: 478 AAKQDPETIFIIEENKERSDGQIMVPSGGFENLKLLRFLAPFVPLLSFPKNALPNLERLE 299
           A  ++ + + II    E +    +       NLK +RF    + LL  PK  L +LE+L 
Sbjct: 175 ATMKELKVVIIINHGLEPAKLTNLSCLSSLPNLKRIRFEKVSISLLDIPKLGLKSLEKLS 234

Query: 298 LRF-SMFEGLYGLENLAE----LEEVHL 230
           L F  + + L  LE+++E    L+E+ +
Sbjct: 235 LWFCHVVDALNELEDVSETLQSLQEIEI 262



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>YCF2_OENHO (Q9MEF2) Protein ycf2|
          Length = 2280

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 439 ENKERSDGQIMVPSGGFENLKLLRFLAPFVPLLSFPKNALPNLERLELRFSMFEG 275
           +  E SD + +  S  F   KLL FL+  +P         P ++R E+R S F+G
Sbjct: 808 DRSEVSDQKKLAKSRSFVFSKLLLFLSNSLPFFFVSLGNTPPIQRSEIRVSEFKG 862



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>PLCB3_RAT (Q99JE6) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 3 (EC 3.1.4.11) (Phospholipase C-beta-3)
            (PLC-beta-3)
          Length = 1234

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 250  ELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRP 146
            +L E+H +   KA   T+ L++G+A A  EG  RP
Sbjct: 972  DLRELHKKHQRKAVALTRRLLDGLAQARAEGKCRP 1006



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>PLCB3_MOUSE (P51432) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            beta 3 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (Phospholipase C-beta-3) (PLC-beta-3)
          Length = 1234

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 250  ELEEVHLRVHDKAGETTKSLVEGMATAAREGNNRP 146
            +L E+H +   KA   T+ L++G+A A  EG  RP
Sbjct: 974  DLRELHKKHQRKAVALTRRLLDGLAQARAEGKCRP 1008


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,449,939
Number of Sequences: 219361
Number of extensions: 1669127
Number of successful extensions: 4641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4641
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6712189044
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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