ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome... 98 5e-17
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 98 5e-17
4emb|AL935148.22| Zebrafish DNA sequence from clone CH211-196G2 i... 52 0.002
5ref|XM_658742.1| Aspergillus nidulans FGSC A4 hypothetical prote... 46 0.15
6gb|AF207903.1|AF207903 Aspergillus nidulans developmental regula... 46 0.15
7dbj|AB103458.1| Emericella nidulans medA gene for medusa, comple... 46 0.15
8gb|AF080599.1|AF080599 Emericella nidulans Medusa (medA) mRNA, c... 46 0.15
9emb|AL954138.8| Zebrafish DNA sequence from clone CH211-108D22, ... 44 0.60
10emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chr... 44 0.60
11gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosom... 42 2.4
12gb|AY268368.1| Reticulitermes lucifugus haplotype H7 large subun... 42 2.4
13emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 ... 42 2.4
14emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 i... 42 2.4
15emb|AL929225.6| Zebrafish DNA sequence from clone CH211-250A24, ... 42 2.4
16emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in ... 42 2.4
17gb|AC115062.13| Mus musculus chromosome 3, clone RP24-399B3, com... 42 2.4
18gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 se... 42 2.4
19gb|AC108432.14| Mus musculus chromosome 7, clone RP23-170D4, com... 40 9.3
20gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, co... 40 9.3
21gb|AC134837.3| Mus musculus BAC clone RP24-338L20 from chromosom... 40 9.3
22emb|AL627089.13| Mouse DNA sequence from clone RP23-107H23 on ch... 40 9.3
23gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 40 9.3
24gb|AC007203.3| Arabidopsis thaliana chromosome I BAC T10P12 geno... 40 9.3
25ref|XM_730283.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.3
26ref|XM_738045.1| Plasmodium chabaudi chabaudi UMP-CMP kinase (PC... 40 9.3
27gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, com... 40 9.3
28gb|AY857867.1| Diaporthe phaseolorum var. caulivora internal tra... 40 9.3
29gb|AF001027.2| Diaporthe phaseolorum strain sw-93-11 internal tr... 40 9.3
30gb|AF001026.2| Diaporthe phaseolorum strain sw-93-10 internal tr... 40 9.3
31gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
32dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, ... 40 9.3
33dbj|D86209.1|CCOMTNDS5G Carabus nemoralis mitochondrial ND5 gene... 40 9.3
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 9.3
35gb|AC104704.1| Drosophila melanogaster 3L BAC RP98-8H6 (Roswell ... 40 9.3
36gb|AC105216.3| Homo sapiens chromosome 18, clone RP11-382C11, co... 40 9.3
37gb|U39851.3| Caenorhabditis elegans cosmid C23G10, complete sequ... 40 9.3
38gb|AC022730.7| Homo sapiens chromosome 8, clone RP11-333A23, com... 40 9.3
39gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 40 9.3
40emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 ... 40 9.3
41gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Ca... 40 9.3
42dbj|AK051915.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 9.3
43gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, co... 40 9.3
44dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
45dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 9.3
46gb|AC093915.2| Homo sapiens BAC clone RP11-785G17 from 2, comple... 40 9.3
47gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chrom... 40 9.3
48gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Canc... 40 9.3
49dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
50emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chr... 40 9.3
51dbj|AK073759.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
52gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complet... 40 9.3
53gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58... 40 9.3
54gb|AF000567.1|AF000567 Diaporthe caulivola strain 713 ITS2, 5.8S... 40 9.3
55gb|AF000563.1|AF000563 Diaporthe caulivola strain 720 ITS2, 5.8S... 40 9.3
56gb|AF000212.1| Diaporthe phaseolorum var. caulivora strain 95-vs... 40 9.3
57gb|AF528097.1| Clostridium tetani plasmid pE88, complete sequence 40 9.3
58gb|AY089965.1| Ascaris suum spliced leader 30 kDa protein mRNA, ... 40 9.3
59gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, comple... 40 9.3
60emb|AL929110.10| Mouse DNA sequence from clone RP23-275P20 on ch... 40 9.3
61gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis tha... 40 9.3
62gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone ... 40 9.3
63gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, com... 40 9.3
64emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chro... 40 9.3
65emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chr... 40 9.3
66emb|AJ312360.1|DPH312360 Diaporthe phaseolus var. caulivora 5.8S... 40 9.3
67emb|AL645974.7| Mouse DNA sequence from clone RP23-249M13 on chr... 40 9.3 
>gb|AC133216.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0049B20, complete sequence
          Length = 131337

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                         
Query: 549   actgtcaccgagagggtcagcttcgtgagggcatccagctctgtgatccattttgggagc 608
             ||||||||||| || |||| ||| |||||  | || |||| |||||||||| | ||||||
Sbjct: 85064 actgtcaccgaaagagtcaactttgtgagttcttcaagctgtgtgatccatctggggagc 85005

                                                                         
Query: 609   tcaaccagcttgccagacagctctagagcattgagaaactttggaggggaagagagagcg 668
             ||||||| ||||||||||||||| || |  ||||||||||| ||||||||||| ||| | 
Sbjct: 85004 tcaaccaacttgccagacagctcaagggacttgagaaacttgggaggggaagaaagatca 84945

                      
Query: 669   cctagtgat 677
             |||||||||
Sbjct: 84944 cctagtgat 84936
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                            
Query: 549      actgtcaccgagagggtcagcttcgtgagggcatccagctctgtgatccattttgggagc 608
                ||||||||||| || |||| ||| |||||  | || |||| |||||||||| | ||||||
Sbjct: 27031776 actgtcaccgaaagagtcaactttgtgagttcttcaagctgtgtgatccatctggggagc 27031717

                                                                            
Query: 609      tcaaccagcttgccagacagctctagagcattgagaaactttggaggggaagagagagcg 668
                ||||||| ||||||||||||||| || |  ||||||||||| ||||||||||| ||| | 
Sbjct: 27031716 tcaaccaacttgccagacagctcaagggacttgagaaacttgggaggggaagaaagatca 27031657

                         
Query: 669      cctagtgat 677
                |||||||||
Sbjct: 27031656 cctagtgat 27031648



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 348      ggcacgaaaggagccaagaagcgaagaagctt 379
                ||||||||||| || ||||||||||| |||||
Sbjct: 27112044 ggcacgaaaggtgcaaagaagcgaagcagctt 27112013
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 109/129 (84%)
 Strand = Plus / Minus

                                                                            
Query: 549      actgtcaccgagagggtcagcttcgtgagggcatccagctctgtgatccattttgggagc 608
                ||||||||||| || |||| ||| |||||  | || |||| |||||||||| | ||||||
Sbjct: 27358829 actgtcaccgaaagagtcaactttgtgagttcttcaagctgtgtgatccatctggggagc 27358770

                                                                            
Query: 609      tcaaccagcttgccagacagctctagagcattgagaaactttggaggggaagagagagcg 668
                ||||||| ||||||||||||||| || |  ||||||||||| ||||||||||| ||| | 
Sbjct: 27358769 tcaaccaacttgccagacagctcaagggacttgagaaacttgggaggggaagaaagatca 27358710

                         
Query: 669      cctagtgat 677
                |||||||||
Sbjct: 27358709 cctagtgat 27358701



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 348      ggcacgaaaggagccaagaagcgaagaagctt 379
                ||||||||||| || ||||||||||| |||||
Sbjct: 27439097 ggcacgaaaggtgcaaagaagcgaagcagctt 27439066
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>emb|AL935148.22| Zebrafish DNA sequence from clone CH211-196G2 in linkage group 8,
              complete sequence
          Length = 195396

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 467    ctgctttgctgcagtgagcgaaaatgtgag 496
              |||||||||||||||| |||||||||||||
Sbjct: 167334 ctgctttgctgcagtgggcgaaaatgtgag 167305
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>ref|XM_658742.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6230.2), mRNA
          Length = 1803

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 601  ttgggagctcaaccagcttgcca 623
            |||||||||||||||||||||||
Sbjct: 1686 ttgggagctcaaccagcttgcca 1708
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>gb|AF207903.1|AF207903 Aspergillus nidulans developmental regulator medusa (medA) gene,
           partial cds; bifunctional tryptophan synthase TRPB
           (trpB) gene, complete cds; and vacuolar ATP synthase
           subunit B VMAB (vmaB) gene, partial cds
          Length = 4939

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 601 ttgggagctcaaccagcttgcca 623
           |||||||||||||||||||||||
Sbjct: 826 ttgggagctcaaccagcttgcca 848
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>dbj|AB103458.1| Emericella nidulans medA gene for medusa, complete cds
          Length = 5656

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 601  ttgggagctcaaccagcttgcca 623
            |||||||||||||||||||||||
Sbjct: 4819 ttgggagctcaaccagcttgcca 4841
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>gb|AF080599.1|AF080599 Emericella nidulans Medusa (medA) mRNA, complete cds
          Length = 4114

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 601  ttgggagctcaaccagcttgcca 623
            |||||||||||||||||||||||
Sbjct: 3277 ttgggagctcaaccagcttgcca 3299
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>emb|AL954138.8| Zebrafish DNA sequence from clone CH211-108D22, complete sequence
          Length = 183082

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 254    aaggttttctaagccatacaat 275
              ||||||||||||||||||||||
Sbjct: 153796 aaggttttctaagccatacaat 153775
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>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete
             sequence
          Length = 199300

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    aaataaacataaatgaatataa 84
             ||||||||||||||||||||||
Sbjct: 27412 aaataaacataaatgaatataa 27391
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>gb|AC138790.2| Mus musculus BAC clone RP23-292H23 from chromosome 19, complete
             sequence
          Length = 197765

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   tcatgcactctgagatgcacc 239
             |||||||||||||||||||||
Sbjct: 88560 tcatgcactctgagatgcacc 88580



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   tcatgcactctgagatgcacc 239
             |||||||||||||||||||||
Sbjct: 88510 tcatgcactctgagatgcacc 88530
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>gb|AY268368.1| Reticulitermes lucifugus haplotype H7 large subunit ribosomal RNA
           gene, partial sequence; mitochondrial gene for
           mitochondrial product
          Length = 461

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 63  aaataaacataaatgaatataaccacata 91
           |||||||||||||| |||||||| |||||
Sbjct: 118 aaataaacataaataaatataacaacata 146
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>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7,
            complete sequence
          Length = 208436

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 284  catgctgaaccgcaattcaag 304
            |||||||||||||||||||||
Sbjct: 5195 catgctgaaccgcaattcaag 5175
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>emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24,
              complete sequence
          Length = 202872

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     cttacaagaaataaacataaa 75
              |||||||||||||||||||||
Sbjct: 160930 cttacaagaaataaacataaa 160910
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>emb|AL929225.6| Zebrafish DNA sequence from clone CH211-250A24, complete sequence
          Length = 151067

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     cttacaagaaataaacataaa 75
              |||||||||||||||||||||
Sbjct: 138082 cttacaagaaataaacataaa 138102
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>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7, complete
              sequence
          Length = 162939

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    catgctgaaccgcaattcaag 304
              |||||||||||||||||||||
Sbjct: 146252 catgctgaaccgcaattcaag 146272
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>gb|AC115062.13| Mus musculus chromosome 3, clone RP24-399B3, complete sequence
          Length = 198727

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 587    ctctgtgatccattttgggag 607
              |||||||||||||||||||||
Sbjct: 150694 ctctgtgatccattttgggag 150674
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>gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence
          Length = 115641

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 51    atttcttacaagaaataaacataaa 75
             ||||||||||||||||| |||||||
Sbjct: 90311 atttcttacaagaaatatacataaa 90287
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>gb|AC108432.14| Mus musculus chromosome 7, clone RP23-170D4, complete sequence
          Length = 183180

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   agaagcttgagattctcaaa 391
             ||||||||||||||||||||
Sbjct: 38587 agaagcttgagattctcaaa 38568
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>gb|AC157790.10| Mus musculus chromosome 7, clone RP24-151M10, complete sequence
          Length = 167728

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  agaagcttgagattctcaaa 391
            ||||||||||||||||||||
Sbjct: 9120 agaagcttgagattctcaaa 9139
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>gb|AC134837.3| Mus musculus BAC clone RP24-338L20 from chromosome 16, complete sequence
          Length = 175319

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tactaaagactttgtagtct 207
              ||||||||||||||||||||
Sbjct: 174094 tactaaagactttgtagtct 174113
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>emb|AL627089.13| Mouse DNA sequence from clone RP23-107H23 on chromosome 4, complete
              sequence
          Length = 182375

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    tcagagcgttctttgttctc 439
              ||||||||||||||||||||
Sbjct: 135583 tcagagcgttctttgttctc 135602
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tactaaagactttgtagtct 207
              ||||||||||||||||||||
Sbjct: 135914 tactaaagactttgtagtct 135895
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>gb|AC007203.3| Arabidopsis thaliana chromosome I BAC T10P12 genomic sequence, complete
             sequence
          Length = 95190

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 53    ttcttacaagaaataaacataaat 76
             |||||||| |||||||||||||||
Sbjct: 69103 ttcttacacgaaataaacataaat 69126
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>ref|XM_730283.1| Plasmodium chabaudi chabaudi hypothetical protein (PC302014.00.0)
           partial mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  aagaaataaacataaatgaa 79
           ||||||||||||||||||||
Sbjct: 375 aagaaataaacataaatgaa 356
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>ref|XM_738045.1| Plasmodium chabaudi chabaudi UMP-CMP kinase (PC000415.01.0) partial
           mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  aagaaataaacataaatgaa 79
           ||||||||||||||||||||
Sbjct: 858 aagaaataaacataaatgaa 839
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>gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, complete sequence
          Length = 142863

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 639   ttgagaaactttggaggggaagag 662
             ||||||| ||||||||||||||||
Sbjct: 37769 ttgagaatctttggaggggaagag 37746
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>gb|AY857867.1| Diaporthe phaseolorum var. caulivora internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence
          Length = 567

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 208 agaaataaacataaatgaat 227
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>gb|AF001027.2| Diaporthe phaseolorum strain sw-93-11 internal transcribed spacer
           1, 5.8S ribosomal RNA gene, and internal transcribed
           spacer 2, complete sequence
          Length = 605

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 206 agaaataaacataaatgaat 225
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>gb|AF001026.2| Diaporthe phaseolorum strain sw-93-10 internal transcribed spacer
           1, 5.8S ribosomal RNA gene, and internal transcribed
           spacer 2, complete sequence
          Length = 605

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 206 agaaataaacataaatgaat 225
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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 348   ggcacgaaaggagccaagaagcgaagaagctt 379
             ||||||||||| || ||||||||||| |||||
Sbjct: 63097 ggcacgaaaggtgcaaagaagcgaagcagctt 63066
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>dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, complete sequence
          Length = 129300

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 639   ttgagaaactttggaggggaagag 662
             ||||||| ||||||||||||||||
Sbjct: 40836 ttgagaatctttggaggggaagag 40859
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>dbj|D86209.1|CCOMTNDS5G Carabus nemoralis mitochondrial ND5 gene for NADH dehydrogenase
          subunit 5, partial cds
          Length = 1083

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 57 tacaagaaataaacataaat 76
          ||||||||||||||||||||
Sbjct: 85 tacaagaaataaacataaat 66
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 639      ttgagaaactttggaggggaagag 662
                ||||||| ||||||||||||||||
Sbjct: 20279332 ttgagaatctttggaggggaagag 20279309
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>gb|AC104704.1| Drosophila melanogaster 3L BAC RP98-8H6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169705

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gtgatactgatcaacaataa 141
              ||||||||||||||||||||
Sbjct: 128179 gtgatactgatcaacaataa 128160
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>gb|AC105216.3| Homo sapiens chromosome 18, clone RP11-382C11, complete sequence
          Length = 154590

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 62     gaaataaacataaatgaata 81
              ||||||||||||||||||||
Sbjct: 111008 gaaataaacataaatgaata 111027
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>gb|U39851.3| Caenorhabditis elegans cosmid C23G10, complete sequence
          Length = 34336

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    acaagaaataaacataaatg 77
             ||||||||||||||||||||
Sbjct: 13165 acaagaaataaacataaatg 13184
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>gb|AC022730.7| Homo sapiens chromosome 8, clone RP11-333A23, complete sequence
          Length = 155468

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    tttcttacaagaaataaaca 71
             ||||||||||||||||||||
Sbjct: 41272 tttcttacaagaaataaaca 41291
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>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    gcattttttggaaagcttag 343
              ||||||||||||||||||||
Sbjct: 188284 gcattttttggaaagcttag 188265
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>emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 in linkage group 13,
              complete sequence
          Length = 194184

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    ccagcttgccagacagctct 632
              ||||||||||||||||||||
Sbjct: 126342 ccagcttgccagacagctct 126361
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>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163912

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    aataaacataaatgaatata 83
             ||||||||||||||||||||
Sbjct: 91402 aataaacataaatgaatata 91421
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>dbj|AK051915.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230018K17
           product:unclassifiable, full insert sequence
          Length = 2524

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 188 tactaaagactttgtagtct 207
           ||||||||||||||||||||
Sbjct: 991 tactaaagactttgtagtct 972
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>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence
          Length = 147505

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 584    cagctctgtgatccattttg 603
              ||||||||||||||||||||
Sbjct: 126105 cagctctgtgatccattttg 126124
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 50       tatttcttacaagaaataaacataaatg 77
                |||||| |||| ||||||||||||||||
Sbjct: 31195500 tatttcctacatgaaataaacataaatg 31195473
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 434     gttctcctcgatgatgaagattgt 457
               |||||||||||||||| |||||||
Sbjct: 1992269 gttctcctcgatgatgtagattgt 1992292
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>gb|AC093915.2| Homo sapiens BAC clone RP11-785G17 from 2, complete sequence
          Length = 120416

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    aagaagcttgagattctcaa 390
              ||||||||||||||||||||
Sbjct: 116899 aagaagcttgagattctcaa 116880
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>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete
             sequence
          Length = 200403

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 639   ttgagaaactttggaggggaagag 662
             ||||||| ||||||||||||||||
Sbjct: 28968 ttgagaatctttggaggggaagag 28991
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>gb|AC156394.6| Mus musculus 6 BAC RP24-314D22 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171323

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     tacaagaaataaacataaat 76
              ||||||||||||||||||||
Sbjct: 123297 tacaagaaataaacataaat 123278
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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1734_E02
          Length = 168566

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 50    tatttcttacaagaaataaacataaatg 77
             |||||| |||| ||||||||||||||||
Sbjct: 75343 tatttcctacatgaaataaacataaatg 75316
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>emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chromosome X, complete
              sequence
          Length = 190433

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    ttcccttgctgcagttgcca 180
              ||||||||||||||||||||
Sbjct: 109025 ttcccttgctgcagttgcca 109044
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>dbj|AK073759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065D18, full
            insert sequence
          Length = 3778

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 348  ggcacgaaaggagccaagaagcgaagaagctt 379
            ||||||||||| || ||||||||||| |||||
Sbjct: 3298 ggcacgaaaggtgcaaagaagcgaagcagctt 3267
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>gb|AC140071.4| Mus musculus BAC clone RP23-394K8 from 3, complete sequence
          Length = 203896

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 356   aggagccaagaagcgaagaagctt 379
             ||||| ||||||||||||||||||
Sbjct: 68959 aggaggcaagaagcgaagaagctt 68982
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>gb|AE003527.3| Drosophila melanogaster chromosome 3L, section 58 of 83 of the complete
              sequence
          Length = 279904

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gtgatactgatcaacaataa 141
              ||||||||||||||||||||
Sbjct: 245945 gtgatactgatcaacaataa 245926
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>gb|AF000567.1|AF000567 Diaporthe caulivola strain 713 ITS2, 5.8S ribosomal RNA gene, and
           ITS1, complete sequence
          Length = 601

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 396 agaaataaacataaatgaat 377
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>gb|AF000563.1|AF000563 Diaporthe caulivola strain 720 ITS2, 5.8S ribosomal RNA gene, and
           ITS1, complete sequence
          Length = 601

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 396 agaaataaacataaatgaat 377
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>gb|AF000212.1| Diaporthe phaseolorum var. caulivora strain 95-vs-43 ITS2, 5.8S
           ribosomal RNA gene, and ITS1, complete sequence
          Length = 601

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 396 agaaataaacataaatgaat 377
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>gb|AF528097.1| Clostridium tetani plasmid pE88, complete sequence
          Length = 74082

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    aagaaataaacataaatgaa 79
             ||||||||||||||||||||
Sbjct: 27072 aagaaataaacataaatgaa 27053
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>gb|AY089965.1| Ascaris suum spliced leader 30 kDa protein mRNA, complete cds
          Length = 813

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 306 ctttcaagattcggcaacgcattt 329
           ||||||||||||| ||||||||||
Sbjct: 164 ctttcaagattcgtcaacgcattt 141
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>gb|AC133599.3| Mus musculus BAC clone RP24-390N10 from 6, complete sequence
          Length = 185830

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   tcctgctttgctgcagtgag 484
             ||||||||||||||||||||
Sbjct: 89015 tcctgctttgctgcagtgag 88996
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>emb|AL929110.10| Mouse DNA sequence from clone RP23-275P20 on chromosome 2, complete
              sequence
          Length = 186386

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     ttcttacaagaaataaacat 72
              ||||||||||||||||||||
Sbjct: 106085 ttcttacaagaaataaacat 106066
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>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 97451

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 51   atttcttacaagaaataaacataa 74
            ||||||||||||||||| ||||||
Sbjct: 8524 atttcttacaagaaatatacataa 8547
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>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete
             sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   actctgagatgcacctcttc 244
             ||||||||||||||||||||
Sbjct: 10391 actctgagatgcacctcttc 10410
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>gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, complete sequence
          Length = 203126

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 584   cagctctgtgatccattttg 603
             ||||||||||||||||||||
Sbjct: 10229 cagctctgtgatccattttg 10248
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>emb|AL669855.20| Mouse DNA sequence from clone RP23-82I5 on chromosome 11, complete
              sequence
          Length = 207991

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    cagctctgtgatccattttg 603
              ||||||||||||||||||||
Sbjct: 113914 cagctctgtgatccattttg 113895
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>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete
             sequence
          Length = 194554

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   actctgagatgcacctcttc 244
             ||||||||||||||||||||
Sbjct: 95712 actctgagatgcacctcttc 95693
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>emb|AJ312360.1|DPH312360 Diaporthe phaseolus var. caulivora 5.8S rRNA gene, internal
           transcribed spacer 1 (ITS1) and internal transcribed
           spacer 2 (ITS2), strain 21-99
          Length = 578

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  agaaataaacataaatgaat 80
           ||||||||||||||||||||
Sbjct: 203 agaaataaacataaatgaat 222
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>emb|AL645974.7| Mouse DNA sequence from clone RP23-249M13 on chromosome 11, complete
              sequence
          Length = 136134

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    catcagcagtgagtactgtc 554
              ||||||||||||||||||||
Sbjct: 121065 catcagcagtgagtactgtc 121084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,404,627
Number of Sequences: 3902068
Number of extensions: 6404627
Number of successful extensions: 127925
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127627
Number of HSP's gapped (non-prelim): 298
length of query: 681
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 658
effective length of database: 17,143,297,704
effective search space: 11280289889232
effective search space used: 11280289889232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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