>TREF1_MOUSE (Q8BXJ2) Transcriptional-regulating factor 1|
           (Transcriptional-regulating protein 132) (Zinc finger
           transcription factor TReP-132)
          Length = 1205

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +2

Query: 338 PPSFRQLRWAQLVVQELLPRGQRQRVRPSPSQGQCH*QGRPWQQVSLQP*HRPCRQRPEL 517
           PP  +Q    ++ VQE+  + Q Q++RPSP Q Q        QQ+ LQ   +   Q P+ 
Sbjct: 274 PPQQQQAGLQRISVQEMQQQQQPQQIRPSPPQQQ--------QQLQLQQ-RQSSLQIPQY 324

Query: 518 HPSQRLPRQVVE 553
           +  Q + + + E
Sbjct: 325 YQPQPMMQHLQE 336

>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -2

Query: 474 DTCCQGRPC*--WHCP*DGEGRTRCRCPRGSSSCTTS*AHRSCLNEGGFGQPLILRSRVI 301
           +TC   +PC     C   G  +  C CP G S      A  +CL+E      L + S + 
Sbjct: 299 NTCGTLQPCLNGGTCSNTGPDKYHCACPDGYSGQNCERADNACLSEPCLNGGLCVESSLG 358

Query: 300 FGCQ 289
           F CQ
Sbjct: 359 FECQ 362

>AMELY_BOVIN (Q99004) Amelogenin, Y isoform precursor (Class II amelogenin)|
          Length = 192

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 464 QQVSLQP*HRPCRQRPELHPSQRLPRQ 544
           Q +  QP H+P + +P +HP QRLP Q
Sbjct: 131 QPIQPQP-HQPLQPQPPVHPIQRLPPQ 156

>AMELX_HUMAN (Q99217) Amelogenin, X isoform precursor|
          Length = 191

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 386 LLPRGQRQRVRPSPSQGQCH*QGRPWQQVSLQP*-HRPCRQRPELHPSQRLPRQ 544
           + P    Q   P P+Q       +P+Q   +QP  H+P + +P +HP Q LP Q
Sbjct: 109 MTPIQHHQPNLPPPAQ-------QPYQPQPVQPQPHQPMQPQPPVHPMQPLPPQ 155

>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +2

Query: 380 QELLPRGQRQRVRPSPSQGQCH*QGRPWQQVSLQ---P*HRPCRQRPELHPSQRLPRQVV 550
           Q+ + + Q QR+    +Q Q   Q +  QQ +LQ   P  +P  Q+P+  PSQ LP+Q+ 
Sbjct: 233 QQQIQQQQLQRM----AQLQLQQQQQQQQQQALQAQPPMQQPSMQQPQPPPSQALPQQLS 288

Query: 551 EV 556
           ++
Sbjct: 289 QL 290

>THI3_SCHPO (P36597) Pyrimidine precursor biosynthesis enzyme thi3 (No message|
           in thiamine protein 1)
          Length = 346

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 45  GCCCYCMCLYIYH 7
           GCCC+C  LYI H
Sbjct: 193 GCCCFCTILYIAH 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,936,824
Number of Sequences: 219361
Number of extensions: 1616792
Number of successful extensions: 4000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3997
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)