ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016392.1| Zea mays clone Contig225 mRNA sequence 60 8e-06
2gb|AY105627.1| Zea mays PCO089890 mRNA sequence 60 8e-06
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
5dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
6gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C1... 46 0.13
7gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, compl... 46 0.13
8ref|XM_477500.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.50
9emb|CR385386.1| Gallus gallus finished cDNA, clone ChEST605l4 44 0.50
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
11dbj|AP005106.6| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
12emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chrom... 44 0.50
13gb|AC154202.2| Mus musculus BAC clone RP24-386E14 from chromosom... 42 2.0
14gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, comp... 42 2.0
15gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosom... 42 2.0
16ref|XM_540136.2| PREDICTED: Canis familiaris similar to anaplast... 42 2.0
17emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on ch... 42 2.0
18gb|AC104256.7| Homo sapiens chromosome 8, clone CTD-2384G12, com... 42 2.0
19emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in... 42 2.0
20gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Canc... 42 2.0
21ref|XM_309113.2| Anopheles gambiae str. PEST ENSANGP00000020537 ... 42 2.0
22ref|XM_308229.2| Anopheles gambiae str. PEST ENSANGP00000020719 ... 42 2.0
23gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, com... 42 2.0
24gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.8
25ref|XM_512304.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 7.8
26gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 7.8
27gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.8
28ref|NM_020175.1| Homo sapiens dihydrouridine synthase 3-like (S.... 40 7.8
29gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, co... 40 7.8
30gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome... 40 7.8
31gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, com... 40 7.8
32ref|XM_804176.1| Trypanosoma cruzi strain CL Brener heat shock p... 40 7.8
33gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosom... 40 7.8
34ref|XM_812539.1| Trypanosoma cruzi strain CL Brener heat shock p... 40 7.8
35gb|AC093376.5| Homo sapiens BAC clone RP11-147A22 from 7, comple... 40 7.8
36ref|NM_006032.2| Homo sapiens copine VI (neuronal) (CPNE6), mRNA 40 7.8
37emb|Z97180.1|HS203P18 Human DNA sequence from clone RP1-203P18 o... 40 7.8
38emb|AL445213.11| Human DNA sequence from clone RP13-52K8 on chro... 40 7.8
39ref|XM_501302.1| Yarrowia lipolytica CLIB122, YALI0C00825g predi... 40 7.8
40emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on ch... 40 7.8
41emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chr... 40 7.8
42emb|BX012398.1|CNS08HQA Single read from an extremity of a full-... 40 7.8
43gb|BC018046.1| Homo sapiens copine VI (neuronal), mRNA (cDNA clo... 40 7.8
44emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in... 40 7.8
45emb|CR861125.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0514 (from cl... 40 7.8
46emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, c... 40 7.8
47gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 7.8
48gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.8
49emb|AL137688.1|HSM802103 Homo sapiens mRNA; cDNA DKFZp434M172 (f... 40 7.8
50emb|AL050397.1|HSM800534 Homo sapiens mRNA; cDNA DKFZp564K1522 (... 40 7.8
51gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, comple... 40 7.8
52ref|NM_182605.1| Homo sapiens hypothetical protein FLJ40448 (FLJ... 40 7.8
53dbj|AK125195.1| Homo sapiens cDNA FLJ43205 fis, clone FEBRA20091... 40 7.8
54dbj|AK097767.1| Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815 40 7.8
55emb|CR598491.1| full-length cDNA clone CS0DC001YG03 of Neuroblas... 40 7.8
56emb|CR598214.1| full-length cDNA clone CS0DF022YI23 of Fetal bra... 40 7.8
57dbj|AK023958.1| Homo sapiens cDNA FLJ13896 fis, clone THYRO10017... 40 7.8
58gb|AC034232.8| Homo sapiens chromosome 5 clone CTD-2233C11, comp... 40 7.8
59gb|AC129342.5| Rattus norvegicus BAC CH230-229B21 (Children's H... 40 7.8
60gb|BC008362.1| Homo sapiens dihydrouridine synthase 3-like (S. c... 40 7.8
61gb|BC009973.1| Homo sapiens dihydrouridine synthase 3-like (S. c... 40 7.8
62gb|AC096733.3| Homo sapiens BAC clone RP11-102N12 from 4, comple... 40 7.8
63dbj|AK222675.1| Homo sapiens mRNA for copine 6 variant, clone: C... 40 7.8
64gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, complet... 40 7.8
65gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, comp... 40 7.8
66gb|AY892955.1| Synthetic construct Homo sapiens clone FLH140037.... 40 7.8
67emb|AL109955.38|HSJ800J21 Human DNA sequence from clone RP4-800J... 40 7.8
68emb|Z74269.1|SCYDL221W S.cerevisiae chromosome IV reading frame ... 40 7.8
69emb|AL365411.1|IR1967720 Homo sapiens mRNA full length insert cD... 40 7.8
70emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-4... 40 7.8
71gb|BC111769.1| Homo sapiens hypothetical protein FLJ40448, mRNA ... 40 7.8
72emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 7.8
73gb|M76550.1|YSCCDC13 Saccharomyces cerevisiae cell division cycl... 40 7.8
74emb|AL732433.7| Mouse DNA sequence from clone RP23-349N21 on chr... 40 7.8
75dbj|AB009288.1| Homo sapiens mRNA for N-copine, complete cds 40 7.8 
>gb|BT016392.1| Zea mays clone Contig225 mRNA sequence
          Length = 958

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 539 cggcaggtggtggaggtggcttcatgtgtggtgg 572
           |||||||||| |||||||||||||||||||||||
Sbjct: 572 cggcaggtggcggaggtggcttcatgtgtggtgg 605
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>gb|AY105627.1| Zea mays PCO089890 mRNA sequence
          Length = 1249

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 539 cggcaggtggtggaggtggcttcatgtgtggtgg 572
           |||||||||| |||||||||||||||||||||||
Sbjct: 770 cggcaggtggcggaggtggcttcatgtgtggtgg 737
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 415      gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 462
                ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 30692885 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 30692932
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>dbj|AP006616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1206D04
          Length = 130176

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 415   gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 462
             ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 95541 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 95588
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>dbj|AK069288.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014P04, full
           insert sequence
          Length = 1305

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 415 gcggccttctccatctcagggacagtgccattagcaggggcgtccttg 462
           ||||||||||||||||| || ||| ||||||| |||| ||||||||||
Sbjct: 952 gcggccttctccatctctggaacactgccattggcagaggcgtccttg 905
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>gb|AC034200.6|AC034200 Homo sapiens chromosome 5 clone CTB-135C10, complete sequence
          Length = 143084

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 388    gctgcctcgggggcagcggcagc 410
              |||||||||||||||||||||||
Sbjct: 108504 gctgcctcgggggcagcggcagc 108482
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>gb|AC091393.3| Homo sapiens chromosome 5 clone CTC-571O20, complete sequence
          Length = 217781

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 388   gctgcctcgggggcagcggcagc 410
             |||||||||||||||||||||||
Sbjct: 77051 gctgcctcgggggcagcggcagc 77029
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>ref|XM_477500.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 996

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 398 gggcagcggcagcgggtgcggc 419
           ||||||||||||||||||||||
Sbjct: 294 gggcagcggcagcgggtgcggc 273
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>emb|CR385386.1| Gallus gallus finished cDNA, clone ChEST605l4
          Length = 1008

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 395 cgggggcagcggcagcgggtgc 416
           ||||||||||||||||||||||
Sbjct: 61  cgggggcagcggcagcgggtgc 82
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 398      gggcagcggcagcgggtgcggc 419
                ||||||||||||||||||||||
Sbjct: 11004971 gggcagcggcagcgggtgcggc 11004992
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>dbj|AP005106.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0091I19
          Length = 126544

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 398   gggcagcggcagcgggtgcggc 419
             ||||||||||||||||||||||
Sbjct: 66914 gggcagcggcagcgggtgcggc 66935
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>emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chromosome 2, complete
            sequence
          Length = 142905

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 267  catctctcctggaacaactctactgacacccaaa 300
            |||||| |||||||||| || |||||||||||||
Sbjct: 3737 catctcccctggaacaattccactgacacccaaa 3704
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>gb|AC154202.2| Mus musculus BAC clone RP24-386E14 from chromosome 14, complete sequence
          Length = 147957

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 535    gccacggcaggtggtggaggt 555
              |||||||||||||||||||||
Sbjct: 129010 gccacggcaggtggtggaggt 129030
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>gb|AC161509.8| Mus musculus chromosome 7, clone RP23-53O17, complete sequence
          Length = 196638

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   ttctccatctcagggacagtg 441
             |||||||||||||||||||||
Sbjct: 26091 ttctccatctcagggacagtg 26071
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>gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosome 14, complete
             sequence
          Length = 173736

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 535   gccacggcaggtggtggaggt 555
             |||||||||||||||||||||
Sbjct: 52070 gccacggcaggtggtggaggt 52090
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>ref|XM_540136.2| PREDICTED: Canis familiaris similar to anaplastic lymphoma kinase
            Ki-1 (LOC483021), mRNA
          Length = 5718

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 539  cggcaggtggtggaggtggct 559
            |||||||||||||||||||||
Sbjct: 3494 cggcaggtggtggaggtggct 3514
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>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
             processed pseudogene similar to ribosomal protein L31
             (RPL31), complete sequence
          Length = 200461

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 368   cagctggtggtgcaggagctg 388
             |||||||||||||||||||||
Sbjct: 39028 cagctggtggtgcaggagctg 39048
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>gb|AC104256.7| Homo sapiens chromosome 8, clone CTD-2384G12, complete sequence
          Length = 135880

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    ataaatatacaaacacataca 30
             |||||||||||||||||||||
Sbjct: 51528 ataaatatacaaacacataca 51548
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>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
             complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 11    taaatatacaaacacatacagtagcagca 39
             |||||||| ||| ||||||||||||||||
Sbjct: 45973 taaatatataaaaacatacagtagcagca 45945
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>gb|AC020632.16| Homo sapiens 3 BAC RP11-333H9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 162029

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     atatacaaacacatacagtag 34
              |||||||||||||||||||||
Sbjct: 152830 atatacaaacacatacagtag 152810
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>ref|XM_309113.2| Anopheles gambiae str. PEST ENSANGP00000020537
           (ENSANGG00000018048), partial mRNA
          Length = 4218

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 368 cagctggtggtgcaggagctgctgc 392
           |||||||||||||||| ||||||||
Sbjct: 117 cagctggtggtgcaggtgctgctgc 93
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>ref|XM_308229.2| Anopheles gambiae str. PEST ENSANGP00000020719 (ENSANGG00000018230),
            partial mRNA
          Length = 4215

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 538  acggcaggtggtggaggtggc 558
            |||||||||||||||||||||
Sbjct: 1589 acggcaggtggtggaggtggc 1569
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>gb|AC102117.13| Mus musculus chromosome 7, clone RP23-154P9, complete sequence
          Length = 196717

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 421    ttctccatctcagggacagtg 441
              |||||||||||||||||||||
Sbjct: 126987 ttctccatctcagggacagtg 126967
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   agcaggtgtcgctgcagcct 484
             ||||||||||||||||||||
Sbjct: 41026 agcaggtgtcgctgcagcct 41007
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>ref|XM_512304.1| PREDICTED: Pan troglodytes similar to hypothetical protein from
           EUROIMAGE 1967720 (LOC455626), mRNA
          Length = 1488

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 817 cctcggggacagcggcagcgggtg 794
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 11     taaatatacaaacacatacagtag 34
              |||||||||||||||||| |||||
Sbjct: 368330 taaatatacaaacacatatagtag 368353
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 396    gggggcagcggcagcgggtg 415
              ||||||||||||||||||||
Sbjct: 106030 gggggcagcggcagcgggtg 106049
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>ref|NM_020175.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae)
           (DUS3L), mRNA
          Length = 2078

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 790 cctcggggacagcggcagcgggtg 767
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>gb|AC121546.13| Mus musculus chromosome 6, clone RP24-537N12, complete sequence
          Length = 207556

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     cagcaacagccttaccttat 54
              ||||||||||||||||||||
Sbjct: 202423 cagcaacagccttaccttat 202404
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>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence
          Length = 166883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cagcaggtgtcgctgcagcc 483
              ||||||||||||||||||||
Sbjct: 129796 cagcaggtgtcgctgcagcc 129815
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>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence
          Length = 230184

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    cagcaggtgtcgctgcagcc 483
              ||||||||||||||||||||
Sbjct: 225236 cagcaggtgtcgctgcagcc 225217
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>ref|XM_804176.1| Trypanosoma cruzi strain CL Brener heat shock protein-like protein
           (Tc00.1047053508443.20) partial mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 372 tggtggtgcaggagctgctgcctc 395
           ||||||||| ||||||||||||||
Sbjct: 638 tggtggtgctggagctgctgcctc 661
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>gb|AC125524.4| Mus musculus BAC clone RP24-378N16 from chromosome 6, complete sequence
          Length = 175917

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     cagcaacagccttaccttat 54
              ||||||||||||||||||||
Sbjct: 173343 cagcaacagccttaccttat 173362
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>ref|XM_812539.1| Trypanosoma cruzi strain CL Brener heat shock protein-like protein
           (Tc00.1047053509157.80) partial mRNA
          Length = 960

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 372 tggtggtgcaggagctgctgcctc 395
           ||||||||| ||||||||||||||
Sbjct: 638 tggtggtgctggagctgctgcctc 661
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>gb|AC093376.5| Homo sapiens BAC clone RP11-147A22 from 7, complete sequence
          Length = 176162

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    accagtcccctctttccctc 78
             ||||||||||||||||||||
Sbjct: 35242 accagtcccctctttccctc 35223
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>ref|NM_006032.2| Homo sapiens copine VI (neuronal) (CPNE6), mRNA
          Length = 2018

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1676 tgccacggcaggtggtggag 1695
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>emb|Z97180.1|HS203P18 Human DNA sequence from clone RP1-203P18 on chromosome Xq27.1-27.3
             Contains a novel pseudogene and a CpG island, complete
             sequence
          Length = 132470

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    ataaatatacaaacacatac 29
             ||||||||||||||||||||
Sbjct: 85973 ataaatatacaaacacatac 85954
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>emb|AL445213.11| Human DNA sequence from clone RP13-52K8 on chromosome X Contains a
             pseudogene similar to part of SLC9A2 (solute carrier
             family 9 (sodium/hydrogen exchanger), isoform 2), complete
             sequence
          Length = 190604

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 146   aataacaaactcaaattaataata 169
             ||||| ||||||||||||||||||
Sbjct: 37377 aataaaaaactcaaattaataata 37354
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>ref|XM_501302.1| Yarrowia lipolytica CLIB122, YALI0C00825g predicted mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ggctcagctggtggtgcagg 383
           ||||||||||||||||||||
Sbjct: 331 ggctcagctggtggtgcagg 312
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>emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on chromosome 1 Contains the
             3' end of the gene for a novel protein (FLJ16613), a
             ribosomal protein L6 (RPL6) pseudogene, the EXO1 gene for
             exonuclease 1, the 5' end of a ribosomal protein L23a
             (RPL23a) pseudogene and a CpG island, complete sequence
          Length = 143967

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 421   ttctccatctcagggacagtgcca 444
             |||||||||||| |||||||||||
Sbjct: 15699 ttctccatctcaaggacagtgcca 15676
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>emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chromosome 1 Contains the
             5' end of a variant of the PHC2 gene for polyhomeotic-like
             2 (Drosophila) and the 5' end of the ZNF31 gene for zinc
             finger protein 31 (KOX 29), complete sequence
          Length = 98873

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tggtgcaggagctgctgcct 394
             ||||||||||||||||||||
Sbjct: 79727 tggtgcaggagctgctgcct 79746
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>emb|BX012398.1|CNS08HQA Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA19CG08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 976

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 acagtgccattagcaggggc 455
           ||||||||||||||||||||
Sbjct: 431 acagtgccattagcaggggc 450
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>gb|BC018046.1| Homo sapiens copine VI (neuronal), mRNA (cDNA clone MGC:26354
            IMAGE:4799650), complete cds
          Length = 2030

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1682 tgccacggcaggtggtggag 1701
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>emb|BX927163.31| Zebrafish DNA sequence from clone DKEY-126A1 in linkage group 22,
             complete sequence
          Length = 157294

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ctccttccccatccatctct 273
             ||||||||||||||||||||
Sbjct: 33189 ctccttccccatccatctct 33170
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>emb|CR861125.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0514 (from clone DKFZp459O0514)
          Length = 2043

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1690 tgccacggcaggtggtggag 1709
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>emb|BX546480.9| Zebrafish DNA sequence from clone DKEY-175C11, complete sequence
          Length = 203056

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     cttaccttattcttaccagt 64
              ||||||||||||||||||||
Sbjct: 199393 cttaccttattcttaccagt 199374
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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    gggggcagcggcagcgggtg 415
              ||||||||||||||||||||
Sbjct: 247518 gggggcagcggcagcgggtg 247499
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 393     ctcgggggcagcggcagcgg 412
               ||||||||||||||||||||
Sbjct: 2643414 ctcgggggcagcggcagcgg 2643433



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    gggggcagcggcagcgggtg 415
              ||||||||||||||||||||
Sbjct: 484530 gggggcagcggcagcgggtg 484511
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>emb|AL137688.1|HSM802103 Homo sapiens mRNA; cDNA DKFZp434M172 (from clone DKFZp434M172)
          Length = 4546

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 4204 tgccacggcaggtggtggag 4223
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>emb|AL050397.1|HSM800534 Homo sapiens mRNA; cDNA DKFZp564K1522 (from clone DKFZp564K1522)
          Length = 2213

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1741 tgccacggcaggtggtggag 1760
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>gb|AC011499.5| Homo sapiens chromosome 19 clone CTB-54O9, complete sequence
          Length = 199776

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 392    cctcgggggcagcggcagcgggtg 415
              |||||||| |||||||||||||||
Sbjct: 162742 cctcggggacagcggcagcgggtg 162765
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>ref|NM_182605.1| Homo sapiens hypothetical protein FLJ40448 (FLJ40448), mRNA
          Length = 2140

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 370 gctggtggtgcaggagctgctgcc 393
           |||||||||||||||| |||||||
Sbjct: 655 gctggtggtgcaggagttgctgcc 632
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>dbj|AK125195.1| Homo sapiens cDNA FLJ43205 fis, clone FEBRA2009185, highly  similar
            to Homo sapiens mRNA for N-copine
          Length = 2771

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 2438 tgccacggcaggtggtggag 2457
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>dbj|AK097767.1| Homo sapiens cDNA FLJ40448 fis, clone TESTI2040815
          Length = 2140

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 370 gctggtggtgcaggagctgctgcc 393
           |||||||||||||||| |||||||
Sbjct: 655 gctggtggtgcaggagttgctgcc 632
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>emb|CR598491.1| full-length cDNA clone CS0DC001YG03 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1818

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 749 cctcggggacagcggcagcgggtg 726
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>emb|CR598214.1| full-length cDNA clone CS0DF022YI23 of Fetal brain of Homo sapiens
            (human)
          Length = 1968

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1651 tgccacggcaggtggtggag 1670
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>dbj|AK023958.1| Homo sapiens cDNA FLJ13896 fis, clone THYRO1001703, weakly similar
           to NIFR3-LIKE PROTEIN
          Length = 2034

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 764 cctcggggacagcggcagcgggtg 741
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>gb|AC034232.8| Homo sapiens chromosome 5 clone CTD-2233C11, complete sequence
          Length = 108892

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 66    ccctctttccctctacaaaatgcaatga 93
             |||||||||||||||||| |||| ||||
Sbjct: 98273 ccctctttccctctacaacatgctatga 98300
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>gb|AC129342.5| Rattus norvegicus  BAC CH230-229B21 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 224257

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   agtaacaaccctcctgctca 144
             ||||||||||||||||||||
Sbjct: 33948 agtaacaaccctcctgctca 33967
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>gb|BC008362.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae), mRNA
           (cDNA clone IMAGE:3611486), partial cds
          Length = 1932

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 633 cctcggggacagcggcagcgggtg 610
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>gb|BC009973.1| Homo sapiens dihydrouridine synthase 3-like (S. cerevisiae), mRNA
           (cDNA clone MGC:14981 IMAGE:4303655), complete cds
          Length = 2078

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 790 cctcggggacagcggcagcgggtg 767
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>gb|AC096733.3| Homo sapiens BAC clone RP11-102N12 from 4, complete sequence
          Length = 189031

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     gataaatatacaaacacatacagt 32
             |||||||||||||| |||||||||
Sbjct: 77232 gataaatatacaaagacatacagt 77209
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>dbj|AK222675.1| Homo sapiens mRNA for copine 6 variant, clone: CBR03180
          Length = 1744

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1636 tgccacggcaggtggtggag 1655
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>gb|AC010980.8| Homo sapiens BAC clone RP11-384O8 from 2, complete sequence
          Length = 171374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   atctctcctggaacaactct 287
             ||||||||||||||||||||
Sbjct: 25922 atctctcctggaacaactct 25903
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>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence
          Length = 127698

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 370   gctggtggtgcaggagctgctgcc 393
             |||||||||||||||| |||||||
Sbjct: 35258 gctggtggtgcaggagttgctgcc 35281
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>gb|AY892955.1| Synthetic construct Homo sapiens clone FLH140037.01L copine VI
            (CPNE6) mRNA, partial cds
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1577 tgccacggcaggtggtggag 1596
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>emb|AL109955.38|HSJ800J21 Human DNA sequence from clone RP4-800J21 on chromosome 20, complete
              sequence
          Length = 108458

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 335    aagccaccttcgttcaggca 354
              ||||||||||||||||||||
Sbjct: 102432 aagccaccttcgttcaggca 102413
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>emb|Z74269.1|SCYDL221W S.cerevisiae chromosome IV reading frame ORF YDL221w
          Length = 3440

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 54  ttcttaccagtcccctctttccct 77
           ||||||||| ||||||||||||||
Sbjct: 282 ttcttaccactcccctctttccct 305
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>emb|AL365411.1|IR1967720 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1967720
          Length = 2205

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cctcgggggcagcggcagcgggtg 415
           |||||||| |||||||||||||||
Sbjct: 693 cctcggggacagcggcagcgggtg 670
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>emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-468E2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194815

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    tgccacggcaggtggtggag 553
              ||||||||||||||||||||
Sbjct: 132399 tgccacggcaggtggtggag 132380
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>gb|BC111769.1| Homo sapiens hypothetical protein FLJ40448, mRNA (cDNA clone
           MGC:133175 IMAGE:40025355), complete cds
          Length = 1903

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 370 gctggtggtgcaggagctgctgcc 393
           |||||||||||||||| |||||||
Sbjct: 601 gctggtggtgcaggagttgctgcc 578
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ggctcagctggtggtgcagg 383
              ||||||||||||||||||||
Sbjct: 110193 ggctcagctggtggtgcagg 110174
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>gb|M76550.1|YSCCDC13 Saccharomyces cerevisiae cell division cycle protein (CDC13) gene,
            complete cds
          Length = 3600

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 54   ttcttaccagtcccctctttccct 77
            ||||||||| ||||||||||||||
Sbjct: 3321 ttcttaccactcccctctttccct 3298
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>emb|AL732433.7| Mouse DNA sequence from clone RP23-349N21 on chromosome X, complete
             sequence
          Length = 196655

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   cataataacaaactcaaatt 162
             ||||||||||||||||||||
Sbjct: 76886 cataataacaaactcaaatt 76905
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>dbj|AB009288.1| Homo sapiens mRNA for N-copine, complete cds
          Length = 1925

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  tgccacggcaggtggtggag 553
            ||||||||||||||||||||
Sbjct: 1676 tgccacggcaggtggtggag 1695


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,994,296
Number of Sequences: 3902068
Number of extensions: 5994296
Number of successful extensions: 137808
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137392
Number of HSP's gapped (non-prelim): 416
length of query: 574
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 551
effective length of database: 17,143,297,704
effective search space: 9445957034904
effective search space used: 9445957034904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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