Clone Name | rbasdn02 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | Y1792_ARCFU (O28482) Hypothetical protein AF1792 | 30 | 6.1 | 2 | DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7) | 30 | 6.1 | 3 | SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor | 30 | 6.1 |
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>Y1792_ARCFU (O28482) Hypothetical protein AF1792| Length = 137 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = -3 Query: 286 EGFDRRNSNPVTIGALCASALIG*TVYHTENGQCVAAVVETKCRLVLLVLIYGYYEF 116 E RR +IGA + A++ HTE +A C LVL ++ YGYY F Sbjct: 79 ERASRRTVEIFSIGAALSGAVMLALDLHTE--AALALEFAVCCVLVLYLIFYGYYSF 133
>DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7)| Length = 947 Score = 30.0 bits (66), Expect = 6.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 73 VYYIYLCCNVCDLLLATAGYNP 8 +YY+ N CD LL TAGY P Sbjct: 899 LYYMKSVVNACDQLLVTAGYGP 920
>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor| Length = 445 Score = 30.0 bits (66), Expect = 6.1 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +1 Query: 307 SAYNSSPSNSPKINHPPTSNWP 372 +A++SSP++ P+ PPT +WP Sbjct: 119 AAFSSSPASPPRPGMPPTRSWP 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,114,386 Number of Sequences: 219361 Number of extensions: 1946890 Number of successful extensions: 4572 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 4395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4567 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)