ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdn02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1792_ARCFU (O28482) Hypothetical protein AF1792 30 6.1
2DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7) 30 6.1
3SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor 30 6.1

>Y1792_ARCFU (O28482) Hypothetical protein AF1792|
          Length = 137

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 286 EGFDRRNSNPVTIGALCASALIG*TVYHTENGQCVAAVVETKCRLVLLVLIYGYYEF 116
           E   RR     +IGA  + A++     HTE    +A      C LVL ++ YGYY F
Sbjct: 79  ERASRRTVEIFSIGAALSGAVMLALDLHTE--AALALEFAVCCVLVLYLIFYGYYSF 133



to top

>DPOL_RSIV (O70736) DNA polymerase (EC 2.7.7.7)|
          Length = 947

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 73  VYYIYLCCNVCDLLLATAGYNP 8
           +YY+    N CD LL TAGY P
Sbjct: 899 LYYMKSVVNACDQLLVTAGYGP 920



to top

>SM50_STRPU (P11994) 50 kDa spicule matrix protein precursor|
          Length = 445

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 307 SAYNSSPSNSPKINHPPTSNWP 372
           +A++SSP++ P+   PPT +WP
Sbjct: 119 AAFSSSPASPPRPGMPPTRSWP 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,114,386
Number of Sequences: 219361
Number of extensions: 1946890
Number of successful extensions: 4572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top