Clone Name | rbasdn02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY107437.1| Zea mays PCO062669 mRNA sequence Length = 1217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 389 cccaaacctaacagcagcacttgctatgcttccaagaccaccattctccaaaagaaattt 448 ||||||||||| |||||| ||| ||||||| ||||||||||| || |||||||||||| Sbjct: 679 cccaaacctaagagcagccattgtcatgcttcaaagaccaccatgct-caaaagaaattt 621 Query: 449 aaca 452 |||| Sbjct: 620 aaca 617
>gb|AY360391.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0023H09, complete sequence Length = 178320 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 21416 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 21375
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Plus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 55519 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 55560
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Plus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 12718340 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 12718381
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Plus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 62335 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 62376
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0051M20 Length = 152702 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Plus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 104309 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 104350
>dbj|AK105754.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C07, full insert sequence Length = 3365 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 2812 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 2771
>dbj|AK100410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H17, full insert sequence Length = 4003 Score = 44.1 bits (22), Expect = 0.56 Identities = 37/42 (88%) Strand = Plus / Minus Query: 404 agcacttgctatgcttccaagaccaccattctccaaaagaaa 445 |||||||| |||||||||||||| | ||| ||||||||||| Sbjct: 3522 agcacttgttatgcttccaagacaagcatcttccaaaagaaa 3481
>gb|AC120193.4| Homo sapiens chromosome 8, clone RP11-10H17, complete sequence Length = 174556 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 349 caccctccaacctccaactggcccc 373 ||||||||| ||||||||||||||| Sbjct: 115069 caccctccaccctccaactggcccc 115045
>gb|AC024958.8| Homo sapiens, clone RP11-561E1, complete sequence Length = 190534 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 349 caccctccaacctccaactggcccc 373 ||||||||| ||||||||||||||| Sbjct: 143834 caccctccaccctccaactggcccc 143858
>gb|AC099025.2| Drosophila melanogaster clone BACR04O19, complete sequence Length = 160827 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caacagcaaatcgcaaacat 48 |||||||||||||||||||| Sbjct: 72539 caacagcaaatcgcaaacat 72558
>gb|AC024218.17| Homo sapiens 3 BAC RP11-668N23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 141860 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 cactatgaaagggctgcagg 470 |||||||||||||||||||| Sbjct: 110312 cactatgaaagggctgcagg 110293
>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166380 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 tccaaaagaaatttaacact 454 |||||||||||||||||||| Sbjct: 133338 tccaaaagaaatttaacact 133357
>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating factor and IL3 gene for interleukin-3, BAC bCHORI92M14 clone, contig 1 Length = 54760 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 caccacagcagccacacact 189 |||||||||||||||||||| Sbjct: 21076 caccacagcagccacacact 21095
>emb|CR388089.8| Zebrafish DNA sequence from clone CH211-87C14, complete sequence Length = 165808 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tatggtagacagtttatcca 221 |||||||||||||||||||| Sbjct: 205 tatggtagacagtttatcca 186
>ref|NM_137238.2| Drosophila melanogaster SP2353 CG8403-RA (SP2353), mRNA Length = 5166 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caacagcaaatcgcaaacat 48 |||||||||||||||||||| Sbjct: 1639 caacagcaaatcgcaaacat 1658
>ref|NM_079010.2| Drosophila melanogaster Argonaute 1 CG6671-RB, transcript variant B (AGO1), mRNA Length = 4576 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ccacagcagccacacactgg 191 |||||||||||||||||||| Sbjct: 27 ccacagcagccacacactgg 8
>gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complete sequence Length = 217921 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 348 tcaccctccaacctccaactggccccgg 375 ||||||||||||| || ||||||||||| Sbjct: 31804 tcaccctccaaccccccactggccccgg 31831
>emb|BX247906.8| Zebrafish DNA sequence from clone DKEY-9O22 in linkage group 24, complete sequence Length = 213917 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 ccaagaccaccattctccaa 439 |||||||||||||||||||| Sbjct: 124779 ccaagaccaccattctccaa 124798
>gb|AC160823.2| Xenopus tropicalis BMP4 gene, complete cds, complete sequence Length = 67072 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 ggcatttagtttccaccacagcag 180 ||||||||||||||||||| |||| Sbjct: 59030 ggcatttagtttccaccactgcag 59007
>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence Length = 172252 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 ctccaacctccaactggccc 372 |||||||||||||||||||| Sbjct: 6302 ctccaacctccaactggccc 6321
>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR06M19, complete sequence Length = 183161 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ccacagcagccacacactgg 191 |||||||||||||||||||| Sbjct: 77048 ccacagcagccacacactgg 77029
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 599 tttgccggctgcttttctgccact 622 |||||| ||||||||||||||||| Sbjct: 30330454 tttgcctgctgcttttctgccact 30330431
>gb|AC008073.4| Homo sapiens BAC clone RP11-507M3 from 2, complete sequence Length = 166660 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tccaaaagaaatttaacact 454 |||||||||||||||||||| Sbjct: 53545 tccaaaagaaatttaacact 53526
>ref|XM_228073.3| PREDICTED: Rattus norvegicus protein O-fucosyltransferase 2 (predicted) (Pofut2_predicted), mRNA Length = 2484 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gccacacactggccattctc 199 |||||||||||||||||||| Sbjct: 1894 gccacacactggccattctc 1875
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tccaaaagaaatttaacact 454 |||||||||||||||||||| Sbjct: 869791 tccaaaagaaatttaacact 869772
>gb|AF239610.1|AF239610 Drosophila melanogaster SP2353 mRNA, complete cds Length = 5166 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caacagcaaatcgcaaacat 48 |||||||||||||||||||| Sbjct: 1639 caacagcaaatcgcaaacat 1658
>gb|AC158911.7| Mus musculus chromosome 5, clone RP24-363D4, complete sequence Length = 119381 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 ttcatccccatcaaacagtccaaa 341 ||||||||||| |||||||||||| Sbjct: 74777 ttcatccccataaaacagtccaaa 74754
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccacagcagccacacactgg 191 |||||||||||||||||||| Sbjct: 95192 ccacagcagccacacactgg 95211
>gb|AE003808.4| Drosophila melanogaster chromosome 2R, section 42 of 73 of the complete sequence Length = 260367 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 caacagcaaatcgcaaacat 48 |||||||||||||||||||| Sbjct: 98794 caacagcaaatcgcaaacat 98813
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 599 tttgccggctgcttttctgccact 622 |||||| ||||||||||||||||| Sbjct: 80350 tttgcctgctgcttttctgccact 80327
>gb|CP000209.1| Drosophila melanogaster genomic scaffold 211000022280773 Length = 49681 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cagcagcacttgctatgctt 419 |||||||||||||||||||| Sbjct: 23045 cagcagcacttgctatgctt 23026
>gb|AC004305.1|AC004305 Drosophila melanogaster DNA sequence (P1 DS04822 (D197)), complete sequence Length = 38205 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 caacagcaaatcgcaaacat 48 |||||||||||||||||||| Sbjct: 12959 caacagcaaatcgcaaacat 12940
>dbj|AB035447.1| Drosophila melanogaster dAGO1 mRNA for argonaute protein, complete cds Length = 3586 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ccacagcagccacacactgg 191 |||||||||||||||||||| Sbjct: 27 ccacagcagccacacactgg 8 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,749,240 Number of Sequences: 3902068 Number of extensions: 4749240 Number of successful extensions: 86954 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86836 Number of HSP's gapped (non-prelim): 117 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)