ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdn01 |
|---|---|
| Clone Library Name | barley_pub |
>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major| surface antigen) Length = 1162 Score = 31.2 bits (69), Expect(2) = 0.19 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Frame = -3 Query: 371 ATHLRPLSPNTLPPHGASSTPP------RPTFPVPSFHYASSATTHDSVATSLPVVIAAS 210 + H P +P HGA STP P+ PV S + + +T DS A S P A S Sbjct: 679 SAHSTPSTPVDSSAHGAPSTPADSSAHGTPSTPVDSSAHGTPSTPADSSAHSTPSTPADS 738 Query: 209 GRSS 198 S Sbjct: 739 SAHS 742 Score = 30.4 bits (67), Expect = 5.3 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 9/169 (5%) Frame = -3 Query: 677 PETPGTSTSYRIPPDPTGEA--SPDKLPRSSSCRCPGEDPPEPA*WWSSPVQVGLIHACX 504 P TP S+++ P P + S P SS P + + S + Sbjct: 804 PSTPVDSSAHGTPSTPVDSSAHSTPSTPVDSSAHGTPSTPVDSS--AHSTPSTPADSSAH 861 Query: 503 XXXXXXXXXXPHAVLAGHIDLLTGATLTFSKEGSSMERPSRTW-LATHLRPLSPNTLPPH 327 H + +D +T + + S+ PS + H P +P H Sbjct: 862 STPSTPADSSAHGTPSTPVDSSAHSTPSTPADSSAHSTPSTPVDSSAHSTPSTPADSSAH 921 Query: 326 GASSTP------PRPTFPVPSFHYASSATTHDSVATSLPVVIAASGRSS 198 G STP P+ P S +++ +T DS A S P A S S Sbjct: 922 GTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPSTPADSSAHS 970 Score = 22.7 bits (47), Expect(2) = 0.19 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Frame = -1 Query: 517 STHALLRHPAGQDPHPTLSWPATSTFSRGPP*PSRRKVHPWSGRVVP----GSPRTSA 356 S H+ PA H T S P S+ P P+ H V G+P T A Sbjct: 595 SAHSTPSTPADSSAHSTPSTPVDSSAHSTPSTPADSSAHGTPSTPVDSSAHGTPSTPA 652
>CSKI2_MOUSE (Q8VHK1) Caskin-2| Length = 1201 Score = 35.0 bits (79), Expect = 0.21 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 7/77 (9%) Frame = -2 Query: 645 DPTGSHRRS*PRQT--PAFLLLPLPWRGPSRACVMVELSCPS----GSYPRMPFFVTPLA 484 DP+ R+ P T P+ L PLP +GP+ M + PS G P +P + LA Sbjct: 722 DPSAPQERNLPEGTERPSKLCSPLPGQGPAPYVFMCPQNLPSSPAPGPPPGVPRAFSYLA 781 Query: 483 RIP-TPRCPGRPHRPSH 436 P P P RP R SH Sbjct: 782 GSPAAPPDPPRPKRRSH 798
>GAG_MLVF5 (P26807) Gag polyprotein (Core polyprotein) [Contains: Matrix| protein p15; RNA-binding phosphoprotein p12; Capsid protein p30; Nucleocapsid protein p10] Length = 538 Score = 34.7 bits (78), Expect = 0.28 Identities = 21/64 (32%), Positives = 25/64 (39%) Frame = -3 Query: 377 WLATHLRPLSPNTLPPHGASSTPPRPTFPVPSFHYASSATTHDSVATSLPVVIAASGRSS 198 W+ + P P L P A S PP P FP P A T P V+ SG Sbjct: 95 WVKPFVHPKPPPLLLPPSAPSLPPEPPFPTPPQSSLYPALTSPLNTKPRPQVLPDSGGPL 154 Query: 197 VRLL 186 + LL Sbjct: 155 IDLL 158
>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like| protein) (GTPase regulator associated with focal adhesion kinase) Length = 814 Score = 33.9 bits (76), Expect = 0.48 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 12/73 (16%) Frame = -3 Query: 362 LRPLSPNTLPPHGASSTPPRPTFPV---PSFHYASSATTHDS---------VATSLPVVI 219 ++P PN+LPP+ + ++P P++P+ PS +S+T+ DS V S+ V+ Sbjct: 655 VKPTRPNSLPPNPSPTSPLSPSWPMFSAPSSPMPTSSTSSDSSPVRSVAGFVWFSVAAVV 714 Query: 218 AASGRSSVRLLLA 180 + RSS+ + + Sbjct: 715 LSLARSSLHAVFS 727
>CN032_BOVIN (Q5E9L3) Protein C14orf32 homolog| Length = 240 Score = 33.5 bits (75), Expect = 0.63 Identities = 35/125 (28%), Positives = 43/125 (34%), Gaps = 8/125 (6%) Frame = -2 Query: 684 PPTRNTRHLHILPDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRM- 508 PP+ + P PTG + P P P P GPS P G YP Sbjct: 54 PPSATPSPVPFGPTPTGMYPSVPPTGPPPGPPAPFPPSGPS-------CPPPGGPYPGPG 106 Query: 507 PFFVTPLARIPTPRCP---GRPHRPSHGGHL----DLLEGRFIHGAAESYLARHAPPPSV 349 P P +P P P G P P+ G L + G + G Y + P PS Sbjct: 107 PTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSP 166 Query: 348 TKYTA 334 Y A Sbjct: 167 GPYPA 171 Score = 25.4 bits (54), Expect(2) = 5.7 Identities = 19/69 (27%), Positives = 25/69 (36%) Frame = -2 Query: 648 PDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRMPFFVTPLARIPTP 469 P T + + P Q P PW PS + PS + +PF TP P+ Sbjct: 16 PAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPPAVPSGLPPSATPSPVPFGPTPTGMYPSV 75 Query: 468 RCPGRPHRP 442 G P P Sbjct: 76 PPTGPPPGP 84 Score = 23.5 bits (49), Expect(2) = 5.7 Identities = 10/24 (41%), Positives = 11/24 (45%) Frame = -3 Query: 356 PLSPNTLPPHGASSTPPRPTFPVP 285 P P PP G S PP +P P Sbjct: 82 PGPPAPFPPSGPSCPPPGGPYPGP 105
>RIPK3_HUMAN (Q9Y572) Receptor-interacting serine/threonine-protein kinase 3 (EC| 2.7.11.1) (RIP-like protein kinase 3) (Receptor-interacting protein 3) (RIP-3) Length = 518 Score = 33.1 bits (74), Expect = 0.82 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 10/50 (20%) Frame = -3 Query: 683 RPPETPGTSTSYRIPPDPTGEASPDKLPRSS----------SCRCPGEDP 564 +PP+TP TST P PT +P PR + SCR P +P Sbjct: 394 QPPQTPETSTFRNQMPSPTSTGTPSPGPRGNQGAERQGMNWSCRTPEPNP 443
>TRH_RAT (P01150) Thyroliberin precursor [Contains: Prothyroliberin;| Thyroliberin (Thyrotropin-releasing hormone) (TRH) (Thyrotropin-releasing factor) (TRF) (TSH-releasing factor) (Protirelin)] Length = 255 Score = 33.1 bits (74), Expect = 0.82 Identities = 24/81 (29%), Positives = 33/81 (40%) Frame = +1 Query: 400 DEPSFEKVKVAPVRRSMWPARTAWGGDPGQRGDEEGHAWIRPTWTGELHHYAGSGGSSPG 579 D P E V+V P RR +W GD G D +W + H PG Sbjct: 38 DLPGLENVQVRPERRFLWKDLQRVRGDLGAALD---------SWITKRQH--------PG 80 Query: 580 QRQEEERGSLSGLASPVGSGG 642 +R+EEE+ + +G GG Sbjct: 81 KREEEEKDIEAEERGDLGEGG 101
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +1 Query: 454 PARTAWGGDPGQRGDEEGHAWIRPTWTGELHHYAGSGGSSPGQRQEE-ERGSLSGLASPV 630 P + GDPG +GD+ G + P G + H GS GQ+ ++ E+G + P Sbjct: 911 PGSSGPRGDPGFKGDK-GDVGL-PGMPGSMEHV--DMGSMKGQKGDQGEKGQIG----PT 962 Query: 631 GSGGIR*DVEVPGVSG 678 G G R D PGV G Sbjct: 963 GDKGSRGDPGTPGVPG 978
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%) Frame = -3 Query: 680 PPETPGTSTSYRIPPDPTGEAS---PDKLPR---SSSCRCPGEDPPEP 555 PP+ G+ +S PP P G S P LPR SS R P PP P Sbjct: 577 PPQVSGSRSSPPAPPLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLP 624
>KSR2_HUMAN (Q6VAB6) Kinase suppressor of ras-2 (hKSR2)| Length = 829 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = -1 Query: 469 TLSWPATSTFSRG----PP*PSRRKVHPWSGRVVPGSPRTSALCHQIHCHRMELP 317 T+ WP T T PP P+ PW + SPR + C Q +CH P Sbjct: 46 TIQWPTTETGKENNPVCPPEPT-----PWIRTHLSQSPRVPSKCVQHYCHTSPTP 95
>SIP1_HUMAN (O60315) Zinc finger homeobox protein 1b (Smad-interacting protein| 1) (SMADIP1) Length = 1214 Score = 32.0 bits (71), Expect = 1.8 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -3 Query: 359 RPLSPNTLPPHGASSTPPRPTFPVPSFHYASSATTHDSVATSLP 228 +PL+PN+ PP S P P P+ S S A H+SV P Sbjct: 713 KPLAPNSNPPTKDSLLPRSPVKPMDSITSPSIAELHNSVTNCDP 756
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 31.6 bits (70), Expect = 2.4 Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Frame = +1 Query: 292 GKVGRGGVLEAPCGGSVFGDRGRRCVASQVRLGRSMDEPSFEKVKVAPVRRSMWPARTAW 471 G+ G G+ P GDRG R + P ++ ++A + + P Sbjct: 933 GEPGEKGMSGLP------GDRGLRGAKGAIG-------PPGDEGEMAIISQKGTPGEPGP 979 Query: 472 GGD---PGQRGDEEGHAWIRPTWTGELHHYAGSGGSSPGQRQEEERGSLSGLASPVGSGG 642 GD PG+RGD+ G ++ GEL Y G G G+ E+ + G P GS G Sbjct: 980 PGDDGFPGERGDK-GTPGMQGR-RGELGRY-GPPGFHRGEPGEKGQPGPPGPPGPPGSTG 1036 Query: 643 IR*DVEVPGVSG 678 +R + PG+ G Sbjct: 1037 LRGFIGFPGLPG 1048
>CN032_MACFA (Q4R837) Protein C14orf32 homolog| Length = 245 Score = 31.6 bits (70), Expect = 2.4 Identities = 35/130 (26%), Positives = 43/130 (33%), Gaps = 13/130 (10%) Frame = -2 Query: 684 PPTRNTRHLHILPDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRM- 508 PP+ + P PTG + P P P P GPS P G YP Sbjct: 54 PPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPS-------CPPPGGPYPAPT 106 Query: 507 -----PFFVTPLARIPTPRCP---GRPHRPSHGGHL----DLLEGRFIHGAAESYLARHA 364 P P +P P P G P P+ G L + G + G Y + Sbjct: 107 VPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNM 166 Query: 363 PPPSVTKYTA 334 P PS Y A Sbjct: 167 PYPSPGPYPA 176
>CN032_PONPY (Q5R623) Protein C14orf32 homolog| Length = 245 Score = 31.6 bits (70), Expect = 2.4 Identities = 35/130 (26%), Positives = 43/130 (33%), Gaps = 13/130 (10%) Frame = -2 Query: 684 PPTRNTRHLHILPDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRM- 508 PP+ + P PTG + P P P P GPS P G YP Sbjct: 54 PPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPS-------CPPPGGPYPAPT 106 Query: 507 -----PFFVTPLARIPTPRCP---GRPHRPSHGGHL----DLLEGRFIHGAAESYLARHA 364 P P +P P P G P P+ G L + G + G Y + Sbjct: 107 VPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNM 166 Query: 363 PPPSVTKYTA 334 P PS Y A Sbjct: 167 PYPSPGPYPA 176 Score = 25.0 bits (53), Expect(2) = 5.7 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 356 PLSPNTLPPHGASSTPPRPTFPVPS 282 P P PP G S PP +P P+ Sbjct: 82 PGPPAPFPPSGPSCPPPGGPYPAPT 106 Score = 23.9 bits (50), Expect(2) = 5.7 Identities = 18/69 (26%), Positives = 24/69 (34%) Frame = -2 Query: 648 PDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRMPFFVTPLARIPTP 469 P T + + P Q P PW PS + PS + +PF P P+ Sbjct: 16 PAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSV 75 Query: 468 RCPGRPHRP 442 G P P Sbjct: 76 PPTGPPPGP 84
>CN032_HUMAN (Q8NDC0) Protein C14orf32| Length = 245 Score = 31.6 bits (70), Expect = 2.4 Identities = 35/130 (26%), Positives = 43/130 (33%), Gaps = 13/130 (10%) Frame = -2 Query: 684 PPTRNTRHLHILPDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRM- 508 PP+ + P PTG + P P P P GPS P G YP Sbjct: 54 PPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPS-------CPPPGGPYPAPT 106 Query: 507 -----PFFVTPLARIPTPRCP---GRPHRPSHGGHL----DLLEGRFIHGAAESYLARHA 364 P P +P P P G P P+ G L + G + G Y + Sbjct: 107 VPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNM 166 Query: 363 PPPSVTKYTA 334 P PS Y A Sbjct: 167 PYPSPGPYPA 176 Score = 25.0 bits (53), Expect(2) = 5.7 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -3 Query: 356 PLSPNTLPPHGASSTPPRPTFPVPS 282 P P PP G S PP +P P+ Sbjct: 82 PGPPAPFPPSGPSCPPPGGPYPAPT 106 Score = 23.9 bits (50), Expect(2) = 5.7 Identities = 18/69 (26%), Positives = 24/69 (34%) Frame = -2 Query: 648 PDPTGSHRRS*PRQTPAFLLLPLPWRGPSRACVMVELSCPSGSYPRMPFFVTPLARIPTP 469 P T + + P Q P PW PS + PS + +PF P P+ Sbjct: 16 PAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFGPAPTGMYPSV 75 Query: 468 RCPGRPHRP 442 G P P Sbjct: 76 PPTGPPPGP 84
>YNC3_CAEEL (P34536) Putative zinc finger protein R05D3.3| Length = 421 Score = 31.2 bits (69), Expect = 3.1 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = -3 Query: 356 PLSPNTLPPHGASSTPPRPTFPVPSFHYASSATTHDSVATSLPVVIAASGRSSVRL 189 P+ PN+L P G + P P FH A + V S P A SG SSV L Sbjct: 93 PMPPNSLNPIGPLNAPKSPFKQQQKFHSIIKAVKREPV--SEPAQNAGSGDSSVTL 146
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 31.2 bits (69), Expect = 3.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -3 Query: 659 STSYRIPPDPTGEASPDKLPRSSSCRCPGEDPPEP 555 + ++ PP TG A P++ P ++ PG PP P Sbjct: 79 AVAHERPPGGTGSADPERPPGATCPESPGPGPPHP 113
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 31.2 bits (69), Expect = 3.1 Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Frame = +1 Query: 475 GDPGQRGD--EEGHAWIRPTWTGELHHYAGSGGSS-----PGQRQEEERGSLSGLASPVG 633 G+PG++GD E G G Y G+GG S PG + E+ LSG A P G Sbjct: 256 GNPGEKGDKGEPGE--------GGQRGYPGNGGLSGQPGLPGMKGEK---GLSGPAGPRG 304 Query: 634 SGGIR*DVEVPGVSGGR 684 G + PG G R Sbjct: 305 KEGRPGNAGPPGFKGDR 321
>SQT1_CAEEL (P12114) Cuticle collagen sqt-1 (Protein squat-1) (Protein| roller-5) Length = 324 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Frame = -3 Query: 677 PETPGTSTSYRIPPDPTGEASPDKLPRSSS--CRCPGEDPPEPA 552 PE P + P GE PD P + C+CP + PP A Sbjct: 271 PEGPSGKQGRQGPDGTQGETGPDGRPGKDAEYCQCPDKSPPSEA 314
>IPP1_RABIT (P01099) Protein phosphatase inhibitor 1 (IPP-1) (I-1)| Length = 166 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 683 RPPETPGTSTSYRIPPDPTGEASPDKLPRSSSCRCPGEDP 564 +PP TPGT R+ P T + PR+ R GE+P Sbjct: 114 QPPGTPGTGAESRLGPSATAQKPAQPSPRAQERR--GEEP 151
>ZN207_HUMAN (O43670) Zinc finger protein 207| Length = 478 Score = 30.8 bits (68), Expect = 4.1 Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 11/174 (6%) Frame = -3 Query: 686 GRPPETPGTSTSYRIPPDPTGEA--SPDKL--PRSSSCRCPGEDPPEPA*WWSSPVQVGL 519 G PP P IPP +A +P L P + + P PP + S Q+G Sbjct: 204 GMPPGMPPPVPRPGIPPMTQAQAVSAPGILNRPPAPTATVPAPQPPVTKPLFPSAGQMG- 262 Query: 518 IHACXXXXXXXXXXXPHAVLAGHIDLLTGATLTFSKEGSSMERPSRTWLATHLRPLSPNT 339 + + + + L+ ++ + + + + T +PL N+ Sbjct: 263 -----------TPVTSSSTASSNSESLSASSKALFPSTAQAQAAVQGPVGTDFKPL--NS 309 Query: 338 LPPHGASSTPPRPTFPVPSFHYASSATTHDSVA-------TSLPVVIAASGRSS 198 P ++ PP+PTFP + AS+ +T +S A TS P + + +S Sbjct: 310 TP--ATTTEPPKPTFPAYTQSTASTTSTTNSTAAKPAASITSKPATLTTTSATS 361
>L100_ADEG1 (Q64760) Late 100 kDa protein| Length = 984 Score = 30.8 bits (68), Expect = 4.1 Identities = 36/125 (28%), Positives = 45/125 (36%), Gaps = 17/125 (13%) Frame = +1 Query: 301 GRGGVLEAPCGGSVFGDRGRRCVASQVRLGRSMDEPSFEKVKVAP-------VRRSMWPA 459 G G L AP + G+R A VRL + F KV P VRR Sbjct: 835 GDGQALPAPGAYTTGGNRAETAPAGAVRLAPDYQDGQFPIAKVGPHYHGPKNVRREDQGY 894 Query: 460 RTAWGGDPGQR---------GDEEGHAWIRPTWTGE-LHHYAGSGGSSPGQRQEEERGSL 609 R GG G+R G G R + E + Y G GG + Q+ E + Sbjct: 895 RGGPGGVRGEREVVLSRRAGGRRFGRRNTRQSGYNERANRYFGRGGGGSVRGQQGEHPTT 954 Query: 610 SGLAS 624 S AS Sbjct: 955 SPSAS 959
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/91 (25%), Positives = 32/91 (35%) Frame = -1 Query: 631 PPAKLAPTNSRVPPLAAALERTLPSLRNGGALLSKWVLSTHALLRHPAGQDPHPTLSWPA 452 PP P + PP + P R G + +R+P G P P +P+ Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357 Query: 451 TSTFSRGPP*PSRRKVHPWSGRVVPGSPRTS 359 PP PSR P ++P P S Sbjct: 358 AGPGMYPPPPPSRPPAPPSGHGMIPPPPPPS 388
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Frame = -3 Query: 437 TGATLTFSKEGSSMERPSRTWLATHLRPLSPNTLPPHGASSTPPRPTFPVPSFHYASSAT 258 +G L F+ GS+ WL+ + PN P S P + PS + Sbjct: 2291 SGGALNFTVGGSTSLNGQCEWLSRLQSGMVPNQYNPLRGSVAPGPLSTQAPSLQHGMVGP 2350 Query: 257 THDSVATS-LPVVIAASGRSSVRL 189 H S+A S L +++ G S RL Sbjct: 2351 LHSSLAASALSQMMSYQGLPSTRL 2374
>TYRO3_RAT (P55146) Tyrosine-protein kinase receptor TYRO3 precursor (EC| 2.7.10.1) (Tyrosine-protein kinase SKY) Length = 880 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/38 (34%), Positives = 16/38 (42%) Frame = -3 Query: 635 DPTGEASPDKLPRSSSCRCPGEDPPEPA*WWSSPVQVG 522 +P A P +P SC G P WW P +VG Sbjct: 134 EPKDLAVPPNVPFQLSCEAVGPPEPVTIFWWRGPTKVG 171
>TRUA_HELPY (P56144) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 242 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = -3 Query: 326 GASSTPPRPTFPVPSFHYASSATTHDSVATSLPVVIAASGRSSVRLLLARCIWKSSDKLT 147 GA++ P R F +F Y + H+ V ++ A RSSVRL++ C+ S +K+T Sbjct: 156 GATTNPKRTIFN--AFAYKTFIIGHECVV--FKIIGDAFLRSSVRLIIQACVQYSLEKIT 211
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/79 (25%), Positives = 31/79 (39%) Frame = -2 Query: 579 PWRGPSRACVMVELSCPSGSYPRMPFFVTPLARIPTPRCPGRPHRPSHGGHLDLLEGRFI 400 P P+R + + +CP GSY +P +P CP R H P + F Sbjct: 297 PGHQPARGDKLCQ-ACPEGSYKALP------GNVPCSPCPARSHSPDPAAPVCPCLQGFY 349 Query: 399 HGAAESYLARHAPPPSVTK 343 +++ A PPS + Sbjct: 350 RASSDPPEAPCTGPPSAPR 368
>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21| Length = 985 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/29 (55%), Positives = 17/29 (58%) Frame = -3 Query: 686 GRPPETPGTSTSYRIPPDPTGEASPDKLP 600 GRP +T G S S P PTGEA PD P Sbjct: 526 GRPQQTGGNSVSSL--PTPTGEALPDGAP 552
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 30.4 bits (67), Expect = 5.3 Identities = 36/123 (29%), Positives = 47/123 (38%) Frame = -1 Query: 595 PPLAAALERTLPSLRNGGALLSKWVLSTHALLRHPAGQDPHPTLSWPATSTFSRGPP*PS 416 P ++A PSL G L T LL+HP P P+ + +GP PS Sbjct: 825 PSQSSAQPHPQPSLHGQGPP-GPHSLQTGPLLQHPGPPQP---FGLPSQPSQGQGPLGPS 880 Query: 415 RRKVHPWSGRVVPGSPRTSALCHQIHCHRMELPAHRLDLPFQCQASIMRRRLPLTTVWLL 236 HP S +P S SAL Q LP L +P + P T + L Sbjct: 881 PAAAHPHSTIQLPAS--QSALQPQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQL 931 Query: 235 PSP 227 P+P Sbjct: 932 PAP 934
>UL52_HCMVA (P16793) Probable major envelope glycoprotein UL52 (HFRF1 protein)| Length = 668 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -3 Query: 371 ATHLRPLSPNTLPPHGASSTPPRPTFPVPSFHYASSAT 258 +TH+ P T PPHG +T PT P PS ++AT Sbjct: 4 STHVSSNGPTT-PPHGPHTTFLPPTSPAPSTSSVAAAT 40
>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 635 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -2 Query: 609 QTPAFLLLPLPWRGPSRACVMVELSCPSG---SYPRMPFFVTPLARIPTPRCPGRPHRPS 439 QTP F R S ++VE++ G SY PF++ R+PTP R Sbjct: 345 QTPQFSRCHFKSRNDSIIHILVEVTTAPGTVHSYLGSPFWIHQAVRLPTPNL---HWREI 401 Query: 438 HGGHLDL 418 GHL+L Sbjct: 402 SSGHLEL 408
>FHOD1_MOUSE (Q6P9Q4) FH1/FH2 domain-containing protein (Formin homolog| overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) Length = 1196 Score = 26.6 bits (57), Expect(2) = 6.3 Identities = 14/42 (33%), Positives = 17/42 (40%) Frame = -3 Query: 680 PPETPGTSTSYRIPPDPTGEASPDKLPRSSSCRCPGEDPPEP 555 PP P + PP P P LP ++ CP PP P Sbjct: 588 PPPPPPPPITGSCPPPP-----PPPLPPPATGSCPPPPPPPP 624 Score = 21.9 bits (45), Expect(2) = 6.3 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = -1 Query: 478 PHPTLSWPATSTFSRGPP*PSRRKVHP--WSGRVVPGSPRTS 359 P P L+ P T + GP P++RK W + G P S Sbjct: 633 PPPPLAAPFTHSALDGPRHPTKRKTVKLFWRELKLTGGPGCS 674
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/50 (32%), Positives = 19/50 (38%) Frame = -3 Query: 680 PPETPGTSTSYRIPPDPTGEASPDKLPRSSSCRCPGEDPPEPA*WWSSPV 531 PP P + S +PP P P P S G PP P+ PV Sbjct: 322 PPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPV 371
>ATL3G_ARATH (Q67YI6) RING-H2 finger protein ATL3G| Length = 411 Score = 30.0 bits (66), Expect = 6.9 Identities = 41/160 (25%), Positives = 61/160 (38%), Gaps = 11/160 (6%) Frame = -3 Query: 641 PPDPTGEASPDKLPRSSSCR---CPGEDPPEPA*WWSSPVQVGLIHACXXXXXXXXXXXP 471 PP +G+ SP P S DPP SP + ++ Sbjct: 6 PPPRSGDNSPSPSPSSGISEEILSRSSDPPLEF----SPPLIAMV--------------- 46 Query: 470 HAVLAGHIDLLTGATLTFSKEGSSMERPSRTWLATHLRPLSPNTLPPHGASSTPPRP--T 297 VLA +T + L + S + R R W R L ++ SS+ R Sbjct: 47 -VVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDLRSFSP 105 Query: 296 FPVPSFHYASSAT--THDSVATSLPVVI----AASGRSSV 195 FP SFHY+S + DSV +LP+ + A +G+ +V Sbjct: 106 FPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAV 145
>DIA_DROME (P48608) Protein diaphanous| Length = 1091 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = -3 Query: 680 PPETPGTSTSYRIPPDPTGEASPDKLPRSSSCRCPGEDPPEP 555 PP PG + PP P G P P R PG PP P Sbjct: 544 PPPMPGRAGGPPPPPPPPGMGGPPPPPMPGMMR-PGGGPPPP 584
>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) (Hyperpolarization-activated cation channel 1) (HAC-1) Length = 863 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = -3 Query: 686 GRPPETPGTSTSYRIPPDPTGEASPDKLPRSSSCRCPGEDPPEP 555 GRP ++PGT+ + PP P A P P P PP P Sbjct: 8 GRPGDSPGTTPAPGPPPPPPPPAPPQPQP-------PPAPPPNP 44
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 25.4 bits (54), Expect(2) = 8.0 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = +1 Query: 553 AGSGG--SSPGQRQEEERGSLSGLASPVGSGGIR*DVEVPGVSGGR 684 AG G SPG+R E +G A P G+ G PG G R Sbjct: 700 AGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG------QPGAKGER 739 Score = 22.7 bits (47), Expect(2) = 8.0 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +2 Query: 443 GRCGRPGQRGVGILASGVTKKGMRG 517 G G PG+RG + G +KG G Sbjct: 635 GPSGLPGERGAAGIPGGKGEKGETG 659
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 29.6 bits (65), Expect = 9.0 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -3 Query: 392 RPSRTWLATHLRPLSPNTLPPHGASSTPPRPTFPVP 285 RP+ T + + P+ +T P + PP P FPVP Sbjct: 878 RPATTTVDSIQAPIPSHTAPRPNPTPAPPPPCFPVP 913
>CO4A1_HUMAN (P02462) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 29.6 bits (65), Expect = 9.0 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = +1 Query: 451 WPARTAWGGDPGQRGDEEGHAWIRPTWTGELHHYAGSGGSSPGQRQEE-ERGSLSGLASP 627 +P + GDPG +GD+ G + P G + GS GQ+ ++ E+G + P Sbjct: 910 FPGSSGPRGDPGLKGDK-GDVGL-PGKPGSMDKV--DMGSMKGQKGDQGEKGQIG----P 961 Query: 628 VGSGGIR*DVEVPGVSG 678 +G G R D PGV G Sbjct: 962 IGEKGSRGDPGTPGVPG 978
>G7C_HUMAN (Q9Y334) Protein G7c precursor| Length = 852 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = -1 Query: 586 AAALERTLPSLRNGGALLSKWVLSTHALLRHPAGQDPHPTLSWP 455 A AL+ TL R G AL + +H+ Q PHP L WP Sbjct: 151 ARALDHTLARQRLGAALHALQDFYSHSNWVELGEQQPHPHLLWP 194
>APAH_PSEAE (Q9I5U7) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 283 Score = 29.6 bits (65), Expect = 9.0 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 8/32 (25%) Frame = +2 Query: 392 APWMNLPSRRSR--------WPP*EGRCGRPG 463 APW + PSR++R W EG C PG Sbjct: 209 APWFSFPSRKTRGEKIIFGHWAALEGHCDEPG 240
>LRP1_HHV1F (P17588) Latency-related protein 1| Length = 340 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/50 (32%), Positives = 21/50 (42%) Frame = -3 Query: 431 ATLTFSKEGSSMERPSRTWLATHLRPLSPNTLPPHGASSTPPRPTFPVPS 282 A L + E + P+ T +H PL P H S PP P P P+ Sbjct: 13 AALWLTPEPAQHGTPTPTHPHSHAPPLPRTPTPSHPHSRAPPLPRAPTPT 62
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/35 (42%), Positives = 15/35 (42%) Frame = -3 Query: 353 LSPNTLPPHGASSTPPRPTFPVPSFHYASSATTHD 249 L P L PH PPRP P PS THD Sbjct: 241 LGPRPLAPHSTRDPPPRPITPGPS-------NTHD 268
>TENS_CHICK (Q04205) Tensin| Length = 1744 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -3 Query: 419 FSKEGSSMERPSRTWLATHLRPLSPNTLPPHGASSTPPRPTF 294 F + + ++P + + H P SP TL A++TPP P F Sbjct: 1242 FQPDPQARQQPQVSVVGVHALPGSPRTLHRTVATNTPPSPGF 1283
>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)| Length = 533 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -3 Query: 356 PLSPNTLPPHGASSTPPRPTFPVP 285 PL P+T P G S PP P P P Sbjct: 104 PLPPSTAPSLGGSGAPPPPPMPPP 127
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 29.6 bits (65), Expect = 9.0 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 8/53 (15%) Frame = -3 Query: 686 GRPPETPGTSTSYRIP------PDPTGEASPDKLPRSSSCRCPGED--PPEPA 552 GR P P T ++ P PDP A P PRS P PP PA Sbjct: 10 GREPTPPATPPTHARPDPTRRHPDPESRAPPHARPRSPPPPAPSPPPLPPRPA 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118,987,592 Number of Sequences: 219361 Number of extensions: 3121442 Number of successful extensions: 12902 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 10332 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12790 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
