Clone Name | rbasdn01 |
---|---|
Clone Library Name | barley_pub |
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 gtggcagtgtatttggtgacagag 355 ||||||| |||||||||||||||| Sbjct: 1185902 gtggcagagtatttggtgacagag 1185925
>ref|XM_425809.1| PREDICTED: Gallus gallus similar to MAIL (LOC428250), mRNA Length = 7239 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 gcggtgtgctggaagctcca 327 |||||||||||||||||||| Sbjct: 1613 gcggtgtgctggaagctcca 1632
>gb|AC151969.3| Mus musculus BAC clone RP24-255B1 from chromosome 9, complete sequence Length = 192458 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 631 ggatccggtgggatccggtaggat 654 ||||| |||||||||||||||||| Sbjct: 108280 ggatctggtgggatccggtaggat 108257
>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence Length = 184002 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cctgaacttctgattgttgg 75 |||||||||||||||||||| Sbjct: 132940 cctgaacttctgattgttgg 132921
>emb|CR769787.7| Zebrafish DNA sequence from clone DKEY-148G19 in linkage group 1, complete sequence Length = 142653 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 agtgtatttggtgacagagg 356 |||||||||||||||||||| Sbjct: 21809 agtgtatttggtgacagagg 21828
>emb|BX957326.8| Zebrafish DNA sequence from clone DKEY-31B16 in linkage group 23, complete sequence Length = 259092 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 atctgaacttttccaaatac 175 |||||||||||||||||||| Sbjct: 186072 atctgaacttttccaaatac 186091
>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the 5' end of the gene for protein kinase (PKE), gene KIAA1674, gene LOC170394, the 5' end of a novel gene and six CpG islands, complete sequence Length = 132772 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ggagggtcctctccagggca 581 |||||||||||||||||||| Sbjct: 131865 ggagggtcctctccagggca 131884
>emb|AL451069.34| Human DNA sequence from clone RP11-432J24 on chromosome 10 Contains the 3' end of gene LOC170394, four novel genes, gene LOC170393, the 5' end of the INPP5A gene for inositol polyphosphate-5-phosphatase 40kDa and five CpG islands, complete sequence Length = 149579 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ggagggtcctctccagggca 581 |||||||||||||||||||| Sbjct: 1093 ggagggtcctctccagggca 1112
>gb|AC152170.4| Ornithorhynchus anatinus BAC clone OABb-47A1 from chromosome unknown, complete sequence Length = 151943 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tcagttagtttatctgaact 164 |||||||||||||||||||| Sbjct: 114925 tcagttagtttatctgaact 114906
>emb|BX511080.4| Zebrafish DNA sequence from clone DKEY-237N7 in linkage group 3, complete sequence Length = 115272 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 atctgaacttttccaaatac 175 |||||||||||||||||||| Sbjct: 39463 atctgaacttttccaaatac 39482
>gb|AC158524.2| Mus musculus BAC clone RP23-377I1 from chromosome 13, complete sequence Length = 191904 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 ctccatggatgaaccttcct 412 |||||||||||||||||||| Sbjct: 34604 ctccatggatgaaccttcct 34585
>gb|AC010364.6| Homo sapiens chromosome 5 clone CTD-2042D5, complete sequence Length = 163400 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgagttcagttagtttatct 159 |||||||||||||||||||| Sbjct: 1431 tgagttcagttagtttatct 1412
>gb|AC113618.5| Homo sapiens BAC clone RP11-1367O10 from 2, complete sequence Length = 199917 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 654 tgtggaggtgcctggtgtttctgg 677 |||||| ||||||||||||||||| Sbjct: 54699 tgtggaagtgcctggtgtttctgg 54722
>gb|AC010450.6|AC010450 Homo sapiens chromosome 5 clone CTD-2242D16, complete sequence Length = 108916 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgagttcagttagtttatct 159 |||||||||||||||||||| Sbjct: 64651 tgagttcagttagtttatct 64632
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gtcgatgtggccggccagga 463 |||||||||||||||||||| Sbjct: 3898179 gtcgatgtggccggccagga 3898198
>gb|AC092619.3| Homo sapiens BAC clone RP11-225M4 from 2, complete sequence Length = 163475 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 654 tgtggaggtgcctggtgtttctgg 677 |||||| ||||||||||||||||| Sbjct: 125945 tgtggaagtgcctggtgtttctgg 125968
>gb|AC156252.2| Xenopus tropicalis clone ISB1-275I4, complete sequence Length = 63849 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 275 aatggaagcttggcactggaaagg 298 ||||||||||| |||||||||||| Sbjct: 60768 aatggaagcttagcactggaaagg 60791
>gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome 17, complete sequence Length = 218488 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cctgaacttctgattgttgg 75 |||||||||||||||||||| Sbjct: 144728 cctgaacttctgattgttgg 144747
>emb|BX649383.4| Zebrafish DNA sequence from clone DKEY-247I12 in linkage group 1, complete sequence Length = 189528 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 agtgtatttggtgacagagg 356 |||||||||||||||||||| Sbjct: 160645 agtgtatttggtgacagagg 160626 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,843,923 Number of Sequences: 3902068 Number of extensions: 4843923 Number of successful extensions: 88972 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88879 Number of HSP's gapped (non-prelim): 93 length of query: 688 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 665 effective length of database: 17,143,297,704 effective search space: 11400292973160 effective search space used: 11400292973160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)