ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdm24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HBP1B_WHEAT (P23923) Transcription factor HBP-1b(c38) 154 2e-37
2HBP1C_WHEAT (Q41558) Transcription factor HBP-1b(c1) (Fragment) 144 3e-34
3TGA21_TOBAC (O24160) TGACG-sequence-specific DNA-binding protein... 137 4e-32
4TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (... 132 1e-30
5TGA6_ARATH (Q39140) Transcription factor TGA6 (AtbZIP45) 131 2e-30
6TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-bindi... 126 6e-29
7TGA7_ARATH (Q93ZE2) Transcription factor TGA7 (AtbZIP50) 94 5e-19
8TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22) 92 2e-18
9TGA4_ARATH (Q39162) Transcription factor TGA4 (Ocs element-bindi... 90 6e-18
10TGA1_ARATH (Q39237) Transcription factor TGA1 (DNA-binding prote... 86 1e-16
11TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein... 77 7e-14

>HBP1B_WHEAT (P23923) Transcription factor HBP-1b(c38)|
          Length = 332

 Score =  154 bits (390), Expect = 2e-37
 Identities = 86/112 (76%), Positives = 87/112 (77%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSSQQAEDALSQGMEALQQSLAETLA           GNVANYMGQMAMAMGKLGTLEN
Sbjct: 221 QQSSQQAEDALSQGMEALQQSLAETLAGSIGSSGSGSTGNVANYMGQMAMAMGKLGTLEN 280

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           FL QADNLRQQTLQQMQRILTTRQSARALLVISDY             RPKE
Sbjct: 281 FLSQADNLRQQTLQQMQRILTTRQSARALLVISDYSSRLRALSSLWLARPKE 332



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>HBP1C_WHEAT (Q41558) Transcription factor HBP-1b(c1) (Fragment)|
          Length = 476

 Score =  144 bits (363), Expect = 3e-34
 Identities = 82/112 (73%), Positives = 85/112 (75%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSSQQAEDALSQGMEALQQSLAETLA            NVA+YMGQMAMAMGKLGTLEN
Sbjct: 366 QQSSQQAEDALSQGMEALQQSLAETLASGSLGPAGSSG-NVASYMGQMAMAMGKLGTLEN 424

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           FLRQADNLR QTLQQMQRILTTRQSARALL ISDY             RP+E
Sbjct: 425 FLRQADNLRLQTLQQMQRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 476



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>TGA21_TOBAC (O24160) TGACG-sequence-specific DNA-binding protein TGA-2.1|
           (TGA2.1)
          Length = 456

 Score =  137 bits (344), Expect = 4e-32
 Identities = 77/112 (68%), Positives = 83/112 (74%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSS QAEDALSQGMEALQQSLAETLA            +VANYMGQMAMAMGKLGTLE 
Sbjct: 343 QQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSG-DVANYMGQMAMAMGKLGTLEG 401

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           FLRQADNLRQQTLQQM R+LTTRQSARALL I++Y             RP+E
Sbjct: 402 FLRQADNLRQQTLQQMHRVLTTRQSARALLAINEYFSRLRALSSLWLARPRE 453



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>TGA2_ARATH (P43273) Transcription factor TGA2 (HBP-1b homolog) (AHBP-1b)|
           (AtbZIP20)
          Length = 330

 Score =  132 bits (331), Expect = 1e-30
 Identities = 73/112 (65%), Positives = 82/112 (73%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +Q+SQQAEDALSQGME+LQQSLA+TL+            NVA+YMGQMAMAMGKLGTLE 
Sbjct: 221 QQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSG--NVASYMGQMAMAMGKLGTLEG 278

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           F+RQADNLR QTLQQM R+LTTRQSARALL I DY             RP+E
Sbjct: 279 FIRQADNLRLQTLQQMIRVLTTRQSARALLAIHDYFSRLRALSSLWLARPRE 330



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>TGA6_ARATH (Q39140) Transcription factor TGA6 (AtbZIP45)|
          Length = 330

 Score =  131 bits (330), Expect = 2e-30
 Identities = 72/114 (63%), Positives = 83/114 (72%)
 Frame = -3

Query: 713 TFKQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTL 534
           + +Q+SQQAEDALSQGME+LQQSLA+TL+            NVA+YMGQMAMAMG+LGTL
Sbjct: 219 SLQQTSQQAEDALSQGMESLQQSLADTLSSGTLGSSSSD--NVASYMGQMAMAMGQLGTL 276

Query: 533 ENFLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           E F+RQADNLR QTLQQM R+LTTRQSARALL I DY             RP+E
Sbjct: 277 EGFIRQADNLRLQTLQQMLRVLTTRQSARALLAIHDYSSRLRALSSLWLARPRE 330



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>TGA5_ARATH (Q39163) Transcription factor TGA5 (Ocs element-binding factor 5)|
           (OBF5) (AtbZIP26)
          Length = 330

 Score =  126 bits (317), Expect = 6e-29
 Identities = 70/112 (62%), Positives = 80/112 (71%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSSQQAEDALSQGM+ LQQSLA+TL+            NVA+YMGQMAMAMGKLGTLE 
Sbjct: 221 QQSSQQAEDALSQGMDNLQQSLADTLSSGTLGSSSSG--NVASYMGQMAMAMGKLGTLEG 278

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           F+RQADNLR QT QQM R+LTTRQSARALL + +Y             RP+E
Sbjct: 279 FIRQADNLRLQTYQQMVRLLTTRQSARALLAVHNYTLRLRALSSLWLARPRE 330



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>TGA7_ARATH (Q93ZE2) Transcription factor TGA7 (AtbZIP50)|
          Length = 368

 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 55/112 (49%), Positives = 68/112 (60%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSSQQAEDALSQG++ LQQSLAE++                +Y   MA A+  L  LE 
Sbjct: 262 QQSSQQAEDALSQGIDKLQQSLAESIVIDAVIEST-------HYPTHMAAAIENLQALEG 314

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           F+ QAD+LRQQTLQQM +ILTTRQSAR LL + +Y             RP+E
Sbjct: 315 FVNQADHLRQQTLQQMAKILTTRQSARGLLALGEYLHRLRALSSLWAARPQE 366



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>TGA3_ARATH (Q39234) Transcription factor TGA3 (AtbZIP22)|
          Length = 384

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 53/112 (47%), Positives = 68/112 (60%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QSSQQAE+ALSQG++ LQQ L E++A               N+   MA AM  L  LE+
Sbjct: 277 QQSSQQAEEALSQGLDKLQQGLVESIAIQIKVVES------VNHGAPMASAMENLQALES 330

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDYXXXXXXXXXXXXXRPKE 372
           F+ QAD+LRQQTLQQM +ILTTRQ+AR LL + +Y             RP+E
Sbjct: 331 FVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPRE 382



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>TGA4_ARATH (Q39162) Transcription factor TGA4 (Ocs element-binding factor 4)|
           (OBF4) (AtbZIP57)
          Length = 364

 Score = 90.1 bits (222), Expect = 6e-18
 Identities = 50/95 (52%), Positives = 64/95 (67%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           +QS QQAEDALSQGME LQ +LAE++A               +Y+ QM  AM +L  L +
Sbjct: 259 RQSCQQAEDALSQGMEKLQHTLAESVAAGKLGE--------GSYIPQMTCAMERLEALVS 310

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDY 423
           F+ QAD+LR +TLQQM RILTTRQ+AR LL + +Y
Sbjct: 311 FVNQADHLRHETLQQMHRILTTRQAARGLLALGEY 345



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>TGA1_ARATH (Q39237) Transcription factor TGA1 (DNA-binding protein TGA1a-like|
           protein) (AtbZIP47)
          Length = 368

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 48/95 (50%), Positives = 63/95 (66%)
 Frame = -3

Query: 707 KQSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANYMGQMAMAMGKLGTLEN 528
           KQS QQAEDAL+QGME LQ +LA+ +A               +Y+ Q+  AM +L  L +
Sbjct: 263 KQSCQQAEDALTQGMEKLQHTLADCVAAGQLGE--------GSYIPQVNSAMDRLEALVS 314

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDY 423
           F+ QAD+LR +TLQQM RILTTRQ+AR LL + +Y
Sbjct: 315 FVNQADHLRHETLQQMYRILTTRQAARGLLALGEY 349



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>TGA1A_TOBAC (P14232) TGACG-sequence-specific DNA-binding protein TGA-1A (TGA1a)|
           (ASF-1 protein)
          Length = 359

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 48/95 (50%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
 Frame = -3

Query: 704 QSSQQAEDALSQGMEALQQSLAETLAXXXXXXXXXXXGNVANY-MGQMAMAMGKLGTLEN 528
           QS QQAEDALSQGM  L Q LAE +A               NY + QM  A+ KL  L  
Sbjct: 254 QSCQQAEDALSQGMVKLHQILAEAVAAGRLGE--------GNYTLPQMGPAIEKLEDLVR 305

Query: 527 FLRQADNLRQQTLQQMQRILTTRQSARALLVISDY 423
           F+ QAD+LRQ+TLQQM RIL T Q+A+ LL + +Y
Sbjct: 306 FVNQADHLRQETLQQMSRILNTCQAAQGLLALGEY 340


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,480,823
Number of Sequences: 219361
Number of extensions: 2014841
Number of successful extensions: 5184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5168
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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