Clone Name | rbasdm11 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK061199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A04, full insert sequence Length = 1055 Score = 464 bits (234), Expect = e-127 Identities = 475/553 (85%), Gaps = 2/553 (0%) Strand = Plus / Minus Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260 |||||||||||||||| ||||| ||||| || | |||| ||| || ||||| ||||| | Sbjct: 885 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 826 Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320 ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||| Sbjct: 825 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 766 Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380 |||| |||||||||| || || |||||||||||||||| |||||||| |||||| || | Sbjct: 765 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 706 Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440 | || ||| || ||||| |||| |||||| |||||||| || ||||||||||| | || Sbjct: 705 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 646 Query: 441 taccgattgtagtgcctgtgatgtcgataatgtgagaaatccctgctgttgtcaaagctt 500 |||||||||| | ||||| || || || ||||||||||||||||||| |||||| |||| Sbjct: 645 taccgattgtgttacctgtcatatcaattatgtgagaaatccctgctgctgtcaatgctt 586 Query: 501 ttgaaattttcttggcgacaatatcaaatttctcaaccttgaccagtggaaacacggtac 560 | |||||||||||||| |||| |||||||| || | |||||| |||||||| || || | Sbjct: 585 tcgaaattttcttggcaacaacttcaaatttttcgatcttgacaagtggaaagacagtgc 526 Query: 561 acttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatcatctgtcc 620 ||||||| |||||||||||||||||||||| || ||||||||||||||||| || | | Sbjct: 525 acttgatgggagcaacaagaggggggaaaccgaatacattcaactgctcatcctccgcct 466 Query: 621 tgccagtcctttgatagaagcaatgttcgaacaagcagtaaataattctccctatgccaa 680 |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 465 tgccaggtctttgatagaagcaatgttcgaacagacagtaaatgattctccctatgccaa 406 Query: 681 atgatggctctatgacagatggagtgaacttccttttgatgttcctttttcttctncatg 740 | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| ||| Sbjct: 405 aggatggctctatgacagaaggagtaaatttcc-tttgatgttcctttttcttctccat- 348 Query: 741 gttaattgaaacc 753 ||||||||||||| Sbjct: 347 gttaattgaaacc 335
>ref|XM_472342.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2022 Score = 456 bits (230), Expect = e-125 Identities = 471/549 (85%), Gaps = 2/549 (0%) Strand = Plus / Minus Query: 205 tcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatctcca 264 |||||||||||| ||||| ||||| || | |||| ||| || ||||| ||||| ||||| Sbjct: 2022 tcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacctcca 1963 Query: 265 catgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagccacctc 324 ||||||||||||||||||||||||||| || |||||||||||||| || || |||||||| Sbjct: 1962 catgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggccacctc 1903 Query: 325 gtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttgtagt 384 |||||||||| || || |||||||||||||||| |||||||| |||||| || || || Sbjct: 1902 atcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcgtggt 1843 Query: 385 tgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctcttacc 444 ||| || ||||| |||| |||||| |||||||| || ||||||||||| | |||||| Sbjct: 1842 gttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgcttacc 1783 Query: 445 gattgtagtgcctgtgatgtcgataatgtgagaaatccctgctgttgtcaaagcttttga 504 |||||| | ||||| || || || ||||||||||||||||||| |||||| ||||| || Sbjct: 1782 gattgtgttacctgtcatatcaattatgtgagaaatccctgctgctgtcaatgctttcga 1723 Query: 505 aattttcttggcgacaatatcaaatttctcaaccttgaccagtggaaacacggtacactt 564 |||||||||||| |||| |||||||| || | |||||| |||||||| || || ||||| Sbjct: 1722 aattttcttggcaacaacttcaaatttttcgatcttgacaagtggaaagacagtgcactt 1663 Query: 565 gattggagcaacaagaggggggaaacgaaaaacattcaactgctcatcatctgtcctgcc 624 ||| |||||||||||||||||||||| || ||||||||||||||||| || | | |||| Sbjct: 1662 gatgggagcaacaagaggggggaaaccgaatacattcaactgctcatcctccgccttgcc 1603 Query: 625 agtcctttgatagaagcaatgttcgaacaagcagtaaataattctccctatgccaaatga 684 || ||||||||||||||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 1602 aggtctttgatagaagcaatgttcgaacagacagtaaatgattctccctatgccaaagga 1543 Query: 685 tggctctatgacagatggagtgaacttccttttgatgttcctttttcttctncatggtta 744 ||||||||||||||| ||||| || |||| ||||||||||||||||||||| ||| |||| Sbjct: 1542 tggctctatgacagaaggagtaaatttcc-tttgatgttcctttttcttctccat-gtta 1485 Query: 745 attgaaacc 753 ||||||||| Sbjct: 1484 attgaaacc 1476
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 287 bits (145), Expect = 3e-74 Identities = 251/284 (88%), Gaps = 2/284 (0%) Strand = Plus / Minus Query: 470 atgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaatatcaaat 529 ||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||||| Sbjct: 19689374 atgtgagaaatccctgctgctgtcaatgctttcgaaattttcttggcaacaacttcaaat 19689315 Query: 530 ttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagaggggggaaa 589 || || | |||||| |||||||| || || |||||||| ||||||||||||||||||||| Sbjct: 19689314 ttttcgatcttgacaagtggaaagacagtgcacttgatgggagcaacaagaggggggaaa 19689255 Query: 590 cgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagcaatgttcg 649 | || ||||||||||||||||| || | | |||||| ||||||||||||||||||||| Sbjct: 19689254 ccgaatacattcaactgctcatcctccgccttgccaggtctttgatagaagcaatgttcg 19689195 Query: 650 aacaagcagtaaataattctccctatgccaaatgatggctctatgacagatggagtgaac 709 |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 19689194 aacagacagtaaatgattctccctatgccaaaggatggctctatgacagaaggagtaaat 19689135 Query: 710 ttccttttgatgttcctttttcttctncatggttaattgaaacc 753 |||| ||||||||||||||||||||| ||| ||||||||||||| Sbjct: 19689134 ttcc-tttgatgttcctttttcttctccat-gttaattgaaacc 19689093 Score = 194 bits (98), Expect = 3e-46 Identities = 212/250 (84%) Strand = Plus / Minus Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260 |||||||||||||||| ||||| ||||| || | |||| ||| || ||||| ||||| | Sbjct: 19690289 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 19690230 Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320 ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||| Sbjct: 19690229 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 19690170 Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380 |||| |||||||||| || || |||||||||||||||| |||||||| |||||| || | Sbjct: 19690169 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 19690110 Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440 | || ||| || ||||| |||| |||||| |||||||| || ||||||||||| | || Sbjct: 19690109 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 19690050 Query: 441 taccgattgt 450 |||||||||| Sbjct: 19690049 taccgattgt 19690040
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 287 bits (145), Expect = 3e-74 Identities = 251/284 (88%), Gaps = 2/284 (0%) Strand = Plus / Minus Query: 470 atgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaatatcaaat 529 ||||||||||||||||||| |||||| ||||| |||||||||||||| |||| |||||| Sbjct: 140100 atgtgagaaatccctgctgctgtcaatgctttcgaaattttcttggcaacaacttcaaat 140041 Query: 530 ttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagaggggggaaa 589 || || | |||||| |||||||| || || |||||||| ||||||||||||||||||||| Sbjct: 140040 ttttcgatcttgacaagtggaaagacagtgcacttgatgggagcaacaagaggggggaaa 139981 Query: 590 cgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagcaatgttcg 649 | || ||||||||||||||||| || | | |||||| ||||||||||||||||||||| Sbjct: 139980 ccgaatacattcaactgctcatcctccgccttgccaggtctttgatagaagcaatgttcg 139921 Query: 650 aacaagcagtaaataattctccctatgccaaatgatggctctatgacagatggagtgaac 709 |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || Sbjct: 139920 aacagacagtaaatgattctccctatgccaaaggatggctctatgacagaaggagtaaat 139861 Query: 710 ttccttttgatgttcctttttcttctncatggttaattgaaacc 753 |||| ||||||||||||||||||||| ||| ||||||||||||| Sbjct: 139860 ttcc-tttgatgttcctttttcttctccat-gttaattgaaacc 139819 Score = 194 bits (98), Expect = 3e-46 Identities = 212/250 (84%) Strand = Plus / Minus Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260 |||||||||||||||| ||||| ||||| || | |||| ||| || ||||| ||||| | Sbjct: 141015 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 140956 Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320 ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||| Sbjct: 140955 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 140896 Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380 |||| |||||||||| || || |||||||||||||||| |||||||| |||||| || | Sbjct: 140895 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 140836 Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440 | || ||| || ||||| |||| |||||| |||||||| || ||||||||||| | || Sbjct: 140835 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 140776 Query: 441 taccgattgt 450 |||||||||| Sbjct: 140775 taccgattgt 140766
>dbj|AK059136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H06, full insert sequence Length = 429 Score = 194 bits (98), Expect = 3e-46 Identities = 212/250 (84%) Strand = Plus / Minus Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260 |||||||||||||||| ||||| ||||| || | |||| ||| || ||||| ||||| | Sbjct: 256 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 197 Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320 ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||| Sbjct: 196 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 137 Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380 |||| |||||||||| || || |||||||||||||||| |||||||| |||||| || | Sbjct: 136 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 77 Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440 | || ||| || ||||| |||| |||||| |||||||| || ||||||||||| | || Sbjct: 76 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 17 Query: 441 taccgattgt 450 |||||||||| Sbjct: 16 taccgattgt 7
>gb|BT019201.1| Zea mays clone Contig874.F mRNA sequence Length = 885 Score = 184 bits (93), Expect = 3e-43 Identities = 411/513 (80%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 224 tcctcatcggtggccaaggtggtgtgtgctgggtatctccacatgatgtctgcccaggtg 283 ||||| |||| |||| ||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 684 tcctcgtcggcggccgaggccgtgtgagccgggtacctccacatgatgtcagcccaggtg 625 Query: 284 ctctgcccatcggtcacttccttcacaaccgaagccacctcgtcgacctcaatacgaatt 343 |||||||| || |||||||||||||| ||||| ||||||||||| || || | || || Sbjct: 624 ctctgcccgtccgtcacttccttcaccaccgaggccacctcgtccacatccacgcggatc 565 Query: 344 tgatccttgctgtccctgtcacggatagtcacgcttgtagt-tgagtcgactgtgatcgc 402 || ||||||||||| | || || | |||||||| || || ||| || || |||||||| Sbjct: 564 tggtccttgctgtcacgatcgcgcaccgtcacgctcgtggtgtga-tcaaccgtgatcgc 506 Query: 403 caaggggacgccgatttcgtctgtccttgcatacctcttaccgattgtagtgcctgtgat 462 || |||||| || || ||||| |||||||| |||| || || |||||| | ||||| || Sbjct: 505 cagggggacaccaatctcgtccgtccttgcgtaccgttttcctattgtattacctgtcat 446 Query: 463 gtcgataatgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaat 522 |||||| || || |||||||| |||| ||||| || || || || |||||||| ||| Sbjct: 445 gtcgatgatatgtgaaatcccagctgctgtcagggccttggagatcttcttggcaacagc 386 Query: 523 atcaaatttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagagg 582 ||||||||||| | |||||||| |||||| ||||| ||||| ||||||||||| ||||| Sbjct: 385 ctcaaatttctcgagcttgaccaatggaaagacggtgcactttattggagcaacgagagg 326 Query: 583 ggggaaacgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagca 642 ||| || | || || || | ||||||||| || ||| |||||| |||||| |||||||| Sbjct: 325 gggaaacctgaacacgtttagctgctcatcctcggtcttgccaggcctttggtagaagca 266 Query: 643 atgttcgaacaagcagtaaataattctccctatgccaaatgatggctctatgacagatgg 702 || || || | |||||| || || | ||| || ||||| |||||||||||||| || || Sbjct: 265 gtgctcaaaaaggcagtatatgatgcgcccgatcccaaaggatggctctatgacggaagg 206 Query: 703 agtgaacttccttttgatgttcctttttcttct 735 ||| || |||| | || || ||||||||||||| Sbjct: 205 agtaaatttcc-tctggtgctcctttttcttct 174
>gb|AY105462.1| Zea mays PCO098051 mRNA sequence Length = 1406 Score = 176 bits (89), Expect = 7e-41 Identities = 410/513 (79%), Gaps = 3/513 (0%) Strand = Plus / Minus Query: 224 tcctcatcggtggccaaggtggtgtgtgctgggtatctccacatgatgtctgcccaggtg 283 ||||| |||| |||| ||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct: 1152 tcctcgtcggcggccgaggccgtgtgagccgggtacctccacatgatgtcagcccaggtg 1093 Query: 284 ctctgcccatcggtcacttccttcacaaccgaagccacctcgtcgacctcaatacgaatt 343 |||||||| || |||||||||||||| ||||| ||||||||||| || || | || || Sbjct: 1092 ctctgcccgtccgtcacttccttcaccaccgaggccacctcgtccacatccacgcggatc 1033 Query: 344 tgatccttgctgtccctgtcacggatagtcacgcttgtagt-tgagtcgactgtgatcgc 402 || ||||||||||| | || || | |||||||| || || ||| || || |||||||| Sbjct: 1032 tggtccttgctgtcacgatcgcgcaccgtcacgctcgtggtgtga-tcaaccgtgatcgc 974 Query: 403 caaggggacgccgatttcgtctgtccttgcatacctcttaccgattgtagtgcctgtgat 462 || |||||| || || || || |||||||| |||| || || |||||| | ||||| || Sbjct: 973 cagggggacaccaatctcatccgtccttgcgtaccgttttcctattgtattacctgtcat 914 Query: 463 gtcgataatgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaat 522 |||||| || || |||||||| |||| ||||| || || || || |||||||| ||| Sbjct: 913 gtcgatgatatgtgaaatcccagctgctgtcagggccttggagatcttcttggcaacagc 854 Query: 523 atcaaatttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagagg 582 ||||||||||| | |||||||| |||||| ||||| ||||| ||||||||||| ||||| Sbjct: 853 ctcaaatttctcgagcttgaccaatggaaagacggtgcactttattggagcaacgagagg 794 Query: 583 ggggaaacgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagca 642 ||| || | || || || | ||||||||| || ||| |||||| |||||| |||||||| Sbjct: 793 gggaaacctgaacacgtttagctgctcatcctcggtcttgccaggcctttggtagaagca 734 Query: 643 atgttcgaacaagcagtaaataattctccctatgccaaatgatggctctatgacagatgg 702 || || || | |||||| || || | ||| || ||||| |||||||||||||| || || Sbjct: 733 gtgctcaaaaaggcagtatatgatgcgcccgatcccaaaggatggctctatgacggaagg 674 Query: 703 agtgaacttccttttgatgttcctttttcttct 735 ||| || |||| | || || ||||||||||||| Sbjct: 673 agtaaatttcc-tctggtgctcctttttcttct 642
>ref|XM_483547.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2097 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406 |||||||||||||| || ||||| ||||||||||| | ||||| ||||| | ||| || Sbjct: 1970 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 1911 Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439 || || ||||| || |||||||||||||||||| Sbjct: 1910 ggaacaccgatctcatctgtccttgcatacctc 1878 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 1649 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 1609
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406 |||||||||||||| || ||||| ||||||||||| | ||||| ||||| | ||| || Sbjct: 26896838 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 26896779 Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439 || || ||||| || |||||||||||||||||| Sbjct: 26896778 ggaacaccgatctcatctgtccttgcatacctc 26896746 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 26896335 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 26896295
>dbj|AK119836.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-B03, full insert sequence Length = 2495 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406 |||||||||||||| || ||||| ||||||||||| | ||||| ||||| | ||| || Sbjct: 2055 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 1996 Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439 || || ||||| || |||||||||||||||||| Sbjct: 1995 ggaacaccgatctcatctgtccttgcatacctc 1963 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 1734 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 1694
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406 |||||||||||||| || ||||| ||||||||||| | ||||| ||||| | ||| || Sbjct: 159628 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 159569 Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439 || || ||||| || |||||||||||||||||| Sbjct: 159568 ggaacaccgatctcatctgtccttgcatacctc 159536 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 159125 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 159085
>dbj|AK068997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I18, full insert sequence Length = 1328 Score = 65.9 bits (33), Expect = 2e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406 |||||||||||||| || ||||| ||||||||||| | ||||| ||||| | ||| || Sbjct: 973 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 914 Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439 || || ||||| || |||||||||||||||||| Sbjct: 913 ggaacaccgatctcatctgtccttgcatacctc 881 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708 ||||| ||||||||||| ||||| ||||| ||||| ||||| Sbjct: 652 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 612
>ref|NM_102728.2| Arabidopsis thaliana ATP binding / glycine-tRNA ligase/ tRNA ligase AT1G29880 mRNA, complete cds Length = 2394 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 1873 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1821
>gb|AY050895.1| Arabidopsis thaliana putative glycyl tRNA synthetase (At1g29880) mRNA, complete cds Length = 2383 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 1872 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1820
>emb|AJ002062.1|ATGTRNAS Arabidopsis thaliana mRNA for glycyl-tRNA synthetase Length = 2190 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 1853 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1801
>emb|BX815479.1|CNS0AATJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS65ZA08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2327 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 1869 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1817
>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence Length = 101075 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 34896 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 34844
>gb|AY086930.1| Arabidopsis thaliana clone 29666 mRNA, complete sequence Length = 2357 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 560 cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612 |||||||| ||||| |||||||| |||||||| || | |||||||||||||| Sbjct: 1867 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1815
>gb|AY111321.1| Zea mays CL10918_1 mRNA sequence Length = 664 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 347 tccttgctgtccctgtcacggatagtcacgcttgt 381 |||||||||||||| || |||||||||||| |||| Sbjct: 444 tccttgctgtccctctctcggatagtcacgtttgt 478
>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene, alternative splice products, complete cds; and pseudogene, complete sequence Length = 185775 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 627 tcctttgatagaagcaatgtt 647 ||||||||||||||||||||| Sbjct: 79248 tcctttgatagaagcaatgtt 79228
>ref|XM_417223.1| PREDICTED: Gallus gallus similar to von Willebrand factor (LOC419031), mRNA Length = 8613 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 487 tgttgtcaaagcttttgaaat 507 ||||||||||||||||||||| Sbjct: 1456 tgttgtcaaagcttttgaaat 1436
>gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, complete sequence Length = 213032 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 713 cttttgatgttcctttttctt 733 ||||||||||||||||||||| Sbjct: 126974 cttttgatgttcctttttctt 126994
>gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 caggtttctgaagcttcttcctcat 230 |||||||||||||||| |||||||| Sbjct: 54932 caggtttctgaagctttttcctcat 54956
>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence Length = 174176 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 660 aaataattctccctatgccaa 680 ||||||||||||||||||||| Sbjct: 141609 aaataattctccctatgccaa 141629 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,826,475 Number of Sequences: 3902068 Number of extensions: 6826475 Number of successful extensions: 128783 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128674 Number of HSP's gapped (non-prelim): 98 length of query: 753 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 730 effective length of database: 17,143,297,704 effective search space: 12514607323920 effective search space used: 12514607323920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)