ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdm11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK061199.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
2ref|XM_472342.1| Oryza sativa (japonica cultivar-group), predic... 456 e-125
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 287 3e-74
4emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4,... 287 3e-74
5dbj|AK059136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 3e-46
6gb|BT019201.1| Zea mays clone Contig874.F mRNA sequence 184 3e-43
7gb|AY105462.1| Zea mays PCO098051 mRNA sequence 176 7e-41
8ref|XM_483547.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-07
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
10dbj|AK119836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
11dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
12dbj|AK068997.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 2e-07
13ref|NM_102728.2| Arabidopsis thaliana ATP binding / glycine-tRNA... 50 0.011
14gb|AY050895.1| Arabidopsis thaliana putative glycyl tRNA synthet... 50 0.011
15emb|AJ002062.1|ATGTRNAS Arabidopsis thaliana mRNA for glycyl-tRN... 50 0.011
16emb|BX815479.1|CNS0AATJ Arabidopsis thaliana Full-length cDNA Co... 50 0.011
17gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N... 50 0.011
18gb|AY086930.1| Arabidopsis thaliana clone 29666 mRNA, complete s... 50 0.011
19gb|AY111321.1| Zea mays CL10918_1 mRNA sequence 46 0.17
20gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation s... 42 2.6
21ref|XM_417223.1| PREDICTED: Gallus gallus similar to von Willebr... 42 2.6
22gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, com... 42 2.6
23gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Canc... 42 2.6
24emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, ... 42 2.6

>dbj|AK061199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-A04, full
           insert sequence
          Length = 1055

 Score =  464 bits (234), Expect = e-127
 Identities = 475/553 (85%), Gaps = 2/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260
           |||||||||||||||| ||||| ||||| || | |||| |||  || ||||| ||||| |
Sbjct: 885 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 826

                                                                       
Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320
           ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||
Sbjct: 825 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 766

                                                                       
Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380
           |||| ||||||||||  || || |||||||||||||||| |||||||| |||||| || |
Sbjct: 765 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 706

                                                                       
Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440
           | ||   ||| || ||||| |||| |||||| |||||||| || ||||||||||| | ||
Sbjct: 705 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 646

                                                                       
Query: 441 taccgattgtagtgcctgtgatgtcgataatgtgagaaatccctgctgttgtcaaagctt 500
           ||||||||||  | ||||| || || || ||||||||||||||||||| |||||| ||||
Sbjct: 645 taccgattgtgttacctgtcatatcaattatgtgagaaatccctgctgctgtcaatgctt 586

                                                                       
Query: 501 ttgaaattttcttggcgacaatatcaaatttctcaaccttgaccagtggaaacacggtac 560
           | |||||||||||||| ||||  |||||||| || | |||||| |||||||| || || |
Sbjct: 585 tcgaaattttcttggcaacaacttcaaatttttcgatcttgacaagtggaaagacagtgc 526

                                                                       
Query: 561 acttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatcatctgtcc 620
           ||||||| ||||||||||||||||||||||  || ||||||||||||||||| || | | 
Sbjct: 525 acttgatgggagcaacaagaggggggaaaccgaatacattcaactgctcatcctccgcct 466

                                                                       
Query: 621 tgccagtcctttgatagaagcaatgttcgaacaagcagtaaataattctccctatgccaa 680
           ||||||  |||||||||||||||||||||||||  |||||||| ||||||||||||||||
Sbjct: 465 tgccaggtctttgatagaagcaatgttcgaacagacagtaaatgattctccctatgccaa 406

                                                                       
Query: 681 atgatggctctatgacagatggagtgaacttccttttgatgttcctttttcttctncatg 740
           | ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| ||| 
Sbjct: 405 aggatggctctatgacagaaggagtaaatttcc-tttgatgttcctttttcttctccat- 348

                        
Query: 741 gttaattgaaacc 753
           |||||||||||||
Sbjct: 347 gttaattgaaacc 335



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>ref|XM_472342.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2022

 Score =  456 bits (230), Expect = e-125
 Identities = 471/549 (85%), Gaps = 2/549 (0%)
 Strand = Plus / Minus

                                                                        
Query: 205  tcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatctcca 264
            |||||||||||| ||||| ||||| || | |||| |||  || ||||| ||||| |||||
Sbjct: 2022 tcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacctcca 1963

                                                                        
Query: 265  catgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagccacctc 324
            ||||||||||||||||||||||||||| || |||||||||||||| || || ||||||||
Sbjct: 1962 catgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggccacctc 1903

                                                                        
Query: 325  gtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttgtagt 384
             ||||||||||  || || |||||||||||||||| |||||||| |||||| || || ||
Sbjct: 1902 atcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcgtggt 1843

                                                                        
Query: 385  tgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctcttacc 444
               ||| || ||||| |||| |||||| |||||||| || ||||||||||| | ||||||
Sbjct: 1842 gttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgcttacc 1783

                                                                        
Query: 445  gattgtagtgcctgtgatgtcgataatgtgagaaatccctgctgttgtcaaagcttttga 504
            ||||||  | ||||| || || || ||||||||||||||||||| |||||| ||||| ||
Sbjct: 1782 gattgtgttacctgtcatatcaattatgtgagaaatccctgctgctgtcaatgctttcga 1723

                                                                        
Query: 505  aattttcttggcgacaatatcaaatttctcaaccttgaccagtggaaacacggtacactt 564
            |||||||||||| ||||  |||||||| || | |||||| |||||||| || || |||||
Sbjct: 1722 aattttcttggcaacaacttcaaatttttcgatcttgacaagtggaaagacagtgcactt 1663

                                                                        
Query: 565  gattggagcaacaagaggggggaaacgaaaaacattcaactgctcatcatctgtcctgcc 624
            ||| ||||||||||||||||||||||  || ||||||||||||||||| || | | ||||
Sbjct: 1662 gatgggagcaacaagaggggggaaaccgaatacattcaactgctcatcctccgccttgcc 1603

                                                                        
Query: 625  agtcctttgatagaagcaatgttcgaacaagcagtaaataattctccctatgccaaatga 684
            ||  |||||||||||||||||||||||||  |||||||| ||||||||||||||||| ||
Sbjct: 1602 aggtctttgatagaagcaatgttcgaacagacagtaaatgattctccctatgccaaagga 1543

                                                                        
Query: 685  tggctctatgacagatggagtgaacttccttttgatgttcctttttcttctncatggtta 744
            ||||||||||||||| ||||| || |||| ||||||||||||||||||||| ||| ||||
Sbjct: 1542 tggctctatgacagaaggagtaaatttcc-tttgatgttcctttttcttctccat-gtta 1485

                     
Query: 745  attgaaacc 753
            |||||||||
Sbjct: 1484 attgaaacc 1476



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  287 bits (145), Expect = 3e-74
 Identities = 251/284 (88%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                            
Query: 470      atgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaatatcaaat 529
                ||||||||||||||||||| |||||| ||||| |||||||||||||| ||||  ||||||
Sbjct: 19689374 atgtgagaaatccctgctgctgtcaatgctttcgaaattttcttggcaacaacttcaaat 19689315

                                                                            
Query: 530      ttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagaggggggaaa 589
                || || | |||||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 19689314 ttttcgatcttgacaagtggaaagacagtgcacttgatgggagcaacaagaggggggaaa 19689255

                                                                            
Query: 590      cgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagcaatgttcg 649
                |  || ||||||||||||||||| || | | ||||||  |||||||||||||||||||||
Sbjct: 19689254 ccgaatacattcaactgctcatcctccgccttgccaggtctttgatagaagcaatgttcg 19689195

                                                                            
Query: 650      aacaagcagtaaataattctccctatgccaaatgatggctctatgacagatggagtgaac 709
                ||||  |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || 
Sbjct: 19689194 aacagacagtaaatgattctccctatgccaaaggatggctctatgacagaaggagtaaat 19689135

                                                            
Query: 710      ttccttttgatgttcctttttcttctncatggttaattgaaacc 753
                |||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct: 19689134 ttcc-tttgatgttcctttttcttctccat-gttaattgaaacc 19689093



 Score =  194 bits (98), Expect = 3e-46
 Identities = 212/250 (84%)
 Strand = Plus / Minus

                                                                            
Query: 201      cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260
                |||||||||||||||| ||||| ||||| || | |||| |||  || ||||| ||||| |
Sbjct: 19690289 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 19690230

                                                                            
Query: 261      tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320
                ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||
Sbjct: 19690229 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 19690170

                                                                            
Query: 321      cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380
                |||| ||||||||||  || || |||||||||||||||| |||||||| |||||| || |
Sbjct: 19690169 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 19690110

                                                                            
Query: 381      tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440
                | ||   ||| || ||||| |||| |||||| |||||||| || ||||||||||| | ||
Sbjct: 19690109 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 19690050

                          
Query: 441      taccgattgt 450
                ||||||||||
Sbjct: 19690049 taccgattgt 19690040



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>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
              complete sequence
          Length = 166410

 Score =  287 bits (145), Expect = 3e-74
 Identities = 251/284 (88%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                          
Query: 470    atgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaatatcaaat 529
              ||||||||||||||||||| |||||| ||||| |||||||||||||| ||||  ||||||
Sbjct: 140100 atgtgagaaatccctgctgctgtcaatgctttcgaaattttcttggcaacaacttcaaat 140041

                                                                          
Query: 530    ttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagaggggggaaa 589
              || || | |||||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 140040 ttttcgatcttgacaagtggaaagacagtgcacttgatgggagcaacaagaggggggaaa 139981

                                                                          
Query: 590    cgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagcaatgttcg 649
              |  || ||||||||||||||||| || | | ||||||  |||||||||||||||||||||
Sbjct: 139980 ccgaatacattcaactgctcatcctccgccttgccaggtctttgatagaagcaatgttcg 139921

                                                                          
Query: 650    aacaagcagtaaataattctccctatgccaaatgatggctctatgacagatggagtgaac 709
              ||||  |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || 
Sbjct: 139920 aacagacagtaaatgattctccctatgccaaaggatggctctatgacagaaggagtaaat 139861

                                                          
Query: 710    ttccttttgatgttcctttttcttctncatggttaattgaaacc 753
              |||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct: 139860 ttcc-tttgatgttcctttttcttctccat-gttaattgaaacc 139819



 Score =  194 bits (98), Expect = 3e-46
 Identities = 212/250 (84%)
 Strand = Plus / Minus

                                                                          
Query: 201    cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260
              |||||||||||||||| ||||| ||||| || | |||| |||  || ||||| ||||| |
Sbjct: 141015 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 140956

                                                                          
Query: 261    tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320
              ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||
Sbjct: 140955 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 140896

                                                                          
Query: 321    cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380
              |||| ||||||||||  || || |||||||||||||||| |||||||| |||||| || |
Sbjct: 140895 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 140836

                                                                          
Query: 381    tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440
              | ||   ||| || ||||| |||| |||||| |||||||| || ||||||||||| | ||
Sbjct: 140835 tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 140776

                        
Query: 441    taccgattgt 450
              ||||||||||
Sbjct: 140775 taccgattgt 140766



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>dbj|AK059136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-H06, full
           insert sequence
          Length = 429

 Score =  194 bits (98), Expect = 3e-46
 Identities = 212/250 (84%)
 Strand = Plus / Minus

                                                                       
Query: 201 cccttcaggtttctgaagcttcttcctcatcggtggccaaggtggtgtgtgctgggtatc 260
           |||||||||||||||| ||||| ||||| || | |||| |||  || ||||| ||||| |
Sbjct: 256 cccttcaggtttctgatgcttcctcctcttcagcggccgaggcagtatgtgccgggtacc 197

                                                                       
Query: 261 tccacatgatgtctgcccaggtgctctgcccatcggtcacttccttcacaaccgaagcca 320
           ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||
Sbjct: 196 tccacatgatgtctgcccaggtgctctgcccgtccgtcacttccttcaccactgaggcca 137

                                                                       
Query: 321 cctcgtcgacctcaatacgaatttgatccttgctgtccctgtcacggatagtcacgcttg 380
           |||| ||||||||||  || || |||||||||||||||| |||||||| |||||| || |
Sbjct: 136 cctcatcgacctcaacgcggatctgatccttgctgtcccggtcacggacagtcacactcg 77

                                                                       
Query: 381 tagttgagtcgactgtgatcgccaaggggacgccgatttcgtctgtccttgcatacctct 440
           | ||   ||| || ||||| |||| |||||| |||||||| || ||||||||||| | ||
Sbjct: 76  tggtgttgtcaaccgtgattgccagggggacaccgatttcatcggtccttgcataacgct 17

                     
Query: 441 taccgattgt 450
           ||||||||||
Sbjct: 16  taccgattgt 7



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>gb|BT019201.1| Zea mays clone Contig874.F mRNA sequence
          Length = 885

 Score =  184 bits (93), Expect = 3e-43
 Identities = 411/513 (80%), Gaps = 3/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 224 tcctcatcggtggccaaggtggtgtgtgctgggtatctccacatgatgtctgcccaggtg 283
           ||||| |||| |||| |||  ||||| || ||||| |||||||||||||| |||||||||
Sbjct: 684 tcctcgtcggcggccgaggccgtgtgagccgggtacctccacatgatgtcagcccaggtg 625

                                                                       
Query: 284 ctctgcccatcggtcacttccttcacaaccgaagccacctcgtcgacctcaatacgaatt 343
           |||||||| || |||||||||||||| ||||| ||||||||||| || || |  || || 
Sbjct: 624 ctctgcccgtccgtcacttccttcaccaccgaggccacctcgtccacatccacgcggatc 565

                                                                       
Query: 344 tgatccttgctgtccctgtcacggatagtcacgcttgtagt-tgagtcgactgtgatcgc 402
           || ||||||||||| |  || || |  |||||||| || || ||| || || ||||||||
Sbjct: 564 tggtccttgctgtcacgatcgcgcaccgtcacgctcgtggtgtga-tcaaccgtgatcgc 506

                                                                       
Query: 403 caaggggacgccgatttcgtctgtccttgcatacctcttaccgattgtagtgcctgtgat 462
           || |||||| || || ||||| |||||||| ||||  || || |||||| | ||||| ||
Sbjct: 505 cagggggacaccaatctcgtccgtccttgcgtaccgttttcctattgtattacctgtcat 446

                                                                       
Query: 463 gtcgataatgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaat 522
           |||||| || || |||||||| |||| |||||  || || || || |||||||| |||  
Sbjct: 445 gtcgatgatatgtgaaatcccagctgctgtcagggccttggagatcttcttggcaacagc 386

                                                                       
Query: 523 atcaaatttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagagg 582
            ||||||||||| | |||||||| |||||| ||||| ||||| ||||||||||| |||||
Sbjct: 385 ctcaaatttctcgagcttgaccaatggaaagacggtgcactttattggagcaacgagagg 326

                                                                       
Query: 583 ggggaaacgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagca 642
           ||| || |  || || || | ||||||||| || ||| |||||| |||||| ||||||||
Sbjct: 325 gggaaacctgaacacgtttagctgctcatcctcggtcttgccaggcctttggtagaagca 266

                                                                       
Query: 643 atgttcgaacaagcagtaaataattctccctatgccaaatgatggctctatgacagatgg 702
            || || || | |||||| || || | ||| || ||||| |||||||||||||| || ||
Sbjct: 265 gtgctcaaaaaggcagtatatgatgcgcccgatcccaaaggatggctctatgacggaagg 206

                                            
Query: 703 agtgaacttccttttgatgttcctttttcttct 735
           ||| || |||| | || || |||||||||||||
Sbjct: 205 agtaaatttcc-tctggtgctcctttttcttct 174



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>gb|AY105462.1| Zea mays PCO098051 mRNA sequence
          Length = 1406

 Score =  176 bits (89), Expect = 7e-41
 Identities = 410/513 (79%), Gaps = 3/513 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  tcctcatcggtggccaaggtggtgtgtgctgggtatctccacatgatgtctgcccaggtg 283
            ||||| |||| |||| |||  ||||| || ||||| |||||||||||||| |||||||||
Sbjct: 1152 tcctcgtcggcggccgaggccgtgtgagccgggtacctccacatgatgtcagcccaggtg 1093

                                                                        
Query: 284  ctctgcccatcggtcacttccttcacaaccgaagccacctcgtcgacctcaatacgaatt 343
            |||||||| || |||||||||||||| ||||| ||||||||||| || || |  || || 
Sbjct: 1092 ctctgcccgtccgtcacttccttcaccaccgaggccacctcgtccacatccacgcggatc 1033

                                                                        
Query: 344  tgatccttgctgtccctgtcacggatagtcacgcttgtagt-tgagtcgactgtgatcgc 402
            || ||||||||||| |  || || |  |||||||| || || ||| || || ||||||||
Sbjct: 1032 tggtccttgctgtcacgatcgcgcaccgtcacgctcgtggtgtga-tcaaccgtgatcgc 974

                                                                        
Query: 403  caaggggacgccgatttcgtctgtccttgcatacctcttaccgattgtagtgcctgtgat 462
            || |||||| || || || || |||||||| ||||  || || |||||| | ||||| ||
Sbjct: 973  cagggggacaccaatctcatccgtccttgcgtaccgttttcctattgtattacctgtcat 914

                                                                        
Query: 463  gtcgataatgtgagaaatccctgctgttgtcaaagcttttgaaattttcttggcgacaat 522
            |||||| || || |||||||| |||| |||||  || || || || |||||||| |||  
Sbjct: 913  gtcgatgatatgtgaaatcccagctgctgtcagggccttggagatcttcttggcaacagc 854

                                                                        
Query: 523  atcaaatttctcaaccttgaccagtggaaacacggtacacttgattggagcaacaagagg 582
             ||||||||||| | |||||||| |||||| ||||| ||||| ||||||||||| |||||
Sbjct: 853  ctcaaatttctcgagcttgaccaatggaaagacggtgcactttattggagcaacgagagg 794

                                                                        
Query: 583  ggggaaacgaaaaacattcaactgctcatcatctgtcctgccagtcctttgatagaagca 642
            ||| || |  || || || | ||||||||| || ||| |||||| |||||| ||||||||
Sbjct: 793  gggaaacctgaacacgtttagctgctcatcctcggtcttgccaggcctttggtagaagca 734

                                                                        
Query: 643  atgttcgaacaagcagtaaataattctccctatgccaaatgatggctctatgacagatgg 702
             || || || | |||||| || || | ||| || ||||| |||||||||||||| || ||
Sbjct: 733  gtgctcaaaaaggcagtatatgatgcgcccgatcccaaaggatggctctatgacggaagg 674

                                             
Query: 703  agtgaacttccttttgatgttcctttttcttct 735
            ||| || |||| | || || |||||||||||||
Sbjct: 673  agtaaatttcc-tctggtgctcctttttcttct 642



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>ref|XM_483547.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2097

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                        
Query: 347  tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406
            |||||||||||||| || ||||| ||||||||||| |  ||||| ||||| | ||| || 
Sbjct: 1970 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 1911

                                             
Query: 407  gggacgccgatttcgtctgtccttgcatacctc 439
            || || ||||| || ||||||||||||||||||
Sbjct: 1910 ggaacaccgatctcatctgtccttgcatacctc 1878



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 668  ctccctatgccaaatgatggctctatgacagatggagtgaa 708
            ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 1649 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 1609



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                            
Query: 347      tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406
                |||||||||||||| || ||||| ||||||||||| |  ||||| ||||| | ||| || 
Sbjct: 26896838 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 26896779

                                                 
Query: 407      gggacgccgatttcgtctgtccttgcatacctc 439
                || || ||||| || ||||||||||||||||||
Sbjct: 26896778 ggaacaccgatctcatctgtccttgcatacctc 26896746



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 668      ctccctatgccaaatgatggctctatgacagatggagtgaa 708
                ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 26896335 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 26896295



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>dbj|AK119836.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-B03, full
            insert sequence
          Length = 2495

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                        
Query: 347  tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406
            |||||||||||||| || ||||| ||||||||||| |  ||||| ||||| | ||| || 
Sbjct: 2055 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 1996

                                             
Query: 407  gggacgccgatttcgtctgtccttgcatacctc 439
            || || ||||| || ||||||||||||||||||
Sbjct: 1995 ggaacaccgatctcatctgtccttgcatacctc 1963



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 668  ctccctatgccaaatgatggctctatgacagatggagtgaa 708
            ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 1734 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 1694



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>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0665C04
          Length = 177054

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                          
Query: 347    tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406
              |||||||||||||| || ||||| ||||||||||| |  ||||| ||||| | ||| || 
Sbjct: 159628 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 159569

                                               
Query: 407    gggacgccgatttcgtctgtccttgcatacctc 439
              || || ||||| || ||||||||||||||||||
Sbjct: 159568 ggaacaccgatctcatctgtccttgcatacctc 159536



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 668    ctccctatgccaaatgatggctctatgacagatggagtgaa 708
              ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 159125 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 159085



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>dbj|AK068997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I18, full
           insert sequence
          Length = 1328

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 347 tccttgctgtccctgtcacggatagtcacgcttgtagttgagtcgactgtgatcgccaag 406
           |||||||||||||| || ||||| ||||||||||| |  ||||| ||||| | ||| || 
Sbjct: 973 tccttgctgtccctctcccggattgtcacgcttgtcgcagagtcaactgttaccgcgaat 914

                                            
Query: 407 gggacgccgatttcgtctgtccttgcatacctc 439
           || || ||||| || ||||||||||||||||||
Sbjct: 913 ggaacaccgatctcatctgtccttgcatacctc 881



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 668 ctccctatgccaaatgatggctctatgacagatggagtgaa 708
           ||||| ||||||||||| ||||| ||||| ||||| |||||
Sbjct: 652 ctcccaatgccaaatgaaggctcaatgactgatggggtgaa 612



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>ref|NM_102728.2| Arabidopsis thaliana ATP binding / glycine-tRNA ligase/ tRNA ligase
            AT1G29880 mRNA, complete cds
          Length = 2394

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 560  cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
            |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 1873 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1821



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>gb|AY050895.1| Arabidopsis thaliana putative glycyl tRNA synthetase (At1g29880)
            mRNA, complete cds
          Length = 2383

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 560  cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
            |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 1872 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1820



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>emb|AJ002062.1|ATGTRNAS Arabidopsis thaliana mRNA for glycyl-tRNA synthetase
          Length = 2190

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 560  cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
            |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 1853 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1801



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>emb|BX815479.1|CNS0AATJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS65ZA08 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2327

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 560  cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
            |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 1869 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1817



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>gb|AC008030.4|AC008030 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete
             sequence
          Length = 101075

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 560   cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
             |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 34896 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 34844



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>gb|AY086930.1| Arabidopsis thaliana clone 29666 mRNA, complete sequence
          Length = 2357

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 560  cacttgattggagcaacaagaggggggaaacgaaaaacattcaactgctcatc 612
            |||||||| ||||| |||||||| |||||||| || |  ||||||||||||||
Sbjct: 1867 cacttgatgggagctacaagaggagggaaacggaacaagttcaactgctcatc 1815



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>gb|AY111321.1| Zea mays CL10918_1 mRNA sequence
          Length = 664

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 347 tccttgctgtccctgtcacggatagtcacgcttgt 381
           |||||||||||||| || |||||||||||| ||||
Sbjct: 444 tccttgctgtccctctctcggatagtcacgtttgt 478



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>gb|L29074.1|HUMFMR1S Homo sapiens fragile X mental retardation syndrome protein (FMR1) gene,
             alternative splice products, complete cds; and
             pseudogene, complete sequence
          Length = 185775

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 627   tcctttgatagaagcaatgtt 647
             |||||||||||||||||||||
Sbjct: 79248 tcctttgatagaagcaatgtt 79228



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>ref|XM_417223.1| PREDICTED: Gallus gallus similar to von Willebrand factor
            (LOC419031), mRNA
          Length = 8613

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 487  tgttgtcaaagcttttgaaat 507
            |||||||||||||||||||||
Sbjct: 1456 tgttgtcaaagcttttgaaat 1436



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>gb|AC117679.8| Mus musculus chromosome 9, clone RP23-435I22, complete sequence
          Length = 213032

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 713    cttttgatgttcctttttctt 733
              |||||||||||||||||||||
Sbjct: 126974 cttttgatgttcctttttctt 126994



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>gb|AC121341.2| Homo sapiens X BAC RP11-655M17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 206   caggtttctgaagcttcttcctcat 230
             |||||||||||||||| ||||||||
Sbjct: 54932 caggtttctgaagctttttcctcat 54956



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>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence
          Length = 174176

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 660    aaataattctccctatgccaa 680
              |||||||||||||||||||||
Sbjct: 141609 aaataattctccctatgccaa 141629


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,826,475
Number of Sequences: 3902068
Number of extensions: 6826475
Number of successful extensions: 128783
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128674
Number of HSP's gapped (non-prelim): 98
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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