ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdm09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FILA_MOUSE (P11088) Filaggrin (Fragment) 29 8.5
2KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precu... 29 8.5
3KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precu... 29 8.5

>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 273 GRQLQQPHGHHHVHARLHQRQQP 341
           G Q +Q  GH H H   H+ +QP
Sbjct: 169 GHQHEQQRGHQHQHQHQHEHEQP 191



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>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)|
           (KP)
          Length = 634

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 279 QLQQPHGHHHVHARLHQRQQP 341
           Q Q  H HHH H   HQ Q P
Sbjct: 58  QKQHEHHHHHHHQHQHQHQAP 78



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>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)|
           (HRPI) (Fragment)
          Length = 473

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 279 QLQQPHGHHHVHARLHQRQQP 341
           Q Q  H HHH H   HQ Q P
Sbjct: 58  QKQHEHHHHHHHQHQHQHQAP 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,261,440
Number of Sequences: 219361
Number of extensions: 856186
Number of successful extensions: 2990
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2893
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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