ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdm05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TF2L1_MOUSE (Q3UNW5) Transcription factor CP2-like protein 1 (CP... 28 7.3
2CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso... 28 7.3

>TF2L1_MOUSE (Q3UNW5) Transcription factor CP2-like protein 1 (CP2-related|
           transcriptional repressor-1) (CRTR-1)
          Length = 478

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 92  RLPQPQRQNTSGITSLCHHPSVF 160
           +LP PQ+Q+ SG  SLC + ++F
Sbjct: 383 QLPLPQKQDDSGDNSLCVYHAIF 405



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>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 74   DKTKVKRLPQPQRQNTSGITSLCHHPSVFRCL 169
            D    +  PQP R +TSG TS   +  +  CL
Sbjct: 2408 DSQSCRDKPQPMRSSTSGATSFGSNEEISECL 2439


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,897,982
Number of Sequences: 219361
Number of extensions: 577101
Number of successful extensions: 1294
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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