Clone Name | rbasdm04 |
---|---|
Clone Library Name | barley_pub |
>CWLO_BACLD (Q65NQ9) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)| (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase) Length = 452 Score = 39.3 bits (90), Expect = 0.009 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%) Frame = -3 Query: 538 TSTQKRG---SRSELRSTASSPSKR-SKTLDDMPRTHGKTRGPFVKYMKD---IETKLEK 380 TS QK+ RSE+ S S K +K D+ + GK + K ++ IE K EK Sbjct: 32 TSQQKQEIQQKRSEVNSGIESKRKEIAKLQDEQKKLEGKIQELDKKALETSNKIEDK-EK 90 Query: 379 ESEKTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLF 212 E++KT ++AL + E +R EER++ +KN E G S+ + + F Sbjct: 91 ENKKTKKEVEALKKEIKETEKRIEERSKVIKNRVRSLQENGGSQNYLNVLLGAQSF 146
>CSN5_DEBHA (Q6BMQ3) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| Length = 469 Score = 35.8 bits (81), Expect = 0.095 Identities = 18/49 (36%), Positives = 30/49 (61%) Frame = -3 Query: 589 NDDDLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRT 443 NDDD D N+G+ PM T+ + R + ++ R SSP + K L+++ +T Sbjct: 390 NDDD-DDNDGYDKRPMYTNYRSRANLTKPRKLGSSPEEHVKLLNNVNKT 437
>A60DA_DROME (P91927) Calcium-binding mitochondrial protein Anon-60Da| Length = 1013 Score = 34.3 bits (77), Expect = 0.28 Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 3/153 (1%) Frame = -3 Query: 562 GFVPSPMSTSTQKRGSRSELRSTASSPSK-RSKTLDDMPRTHGKTRGPFVKYMKDIETKL 386 G +PS TST ++ + S +K +TLD MP H + K + TK+ Sbjct: 262 GMLPSTFQTSTDRQEKLRQSLSVRLEVAKFLQQTLDQMPVQHKEHSSEEAKQFEAFFTKI 321 Query: 385 EKESE--KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLF 212 +E D I++ +E S R Q C+ L + + + + + L Sbjct: 322 RNPTEPVSNDEIIKFAKRFDDEITLDSLSREQLAALCRVLELNTIGTTTLLRFQLRLKLR 381 Query: 211 KEKHNRTVFQNMKIPEARLIWLKRWCRAKNMYA 113 + V + L+ L++ C+A+ M A Sbjct: 382 SLATDDRVIAREGVDSLDLLELQQACKARGMRA 414
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 33.5 bits (75), Expect = 0.47 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Frame = -3 Query: 517 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 374 S+S+ R + SPSKRSK+ D ++ GK R P D + K+E +S Sbjct: 215 SKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSP-----TDDKVKIEDKS 269 Query: 373 EKTDSILQALVNQGNEKVRRSEERA 299 + D ++N+ + R + R+ Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRS 294
>OPTN_MOUSE (Q8K3K8) Optineurin| Length = 584 Score = 33.5 bits (75), Expect = 0.47 Identities = 23/96 (23%), Positives = 43/96 (44%) Frame = -3 Query: 580 DLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD 401 +L+ + V S Q RSE++ + + L + TH K K +K Sbjct: 350 ELNEKQELVYSNKKLELQVESMRSEIKMEQAKTEEEKSRLATLQATHNKLLQEHNKALKT 409 Query: 400 IETKLEKESEKTDSILQALVNQGNEKVRRSEERAQS 293 IE ++++EK D + L+ + +EK+ +E+ S Sbjct: 410 IEELTKQQAEKVDKM---LLQELSEKLELAEQALAS 442
>HISX_NEIMA (Q9JTH9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/69 (21%), Positives = 32/69 (46%) Frame = -3 Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377 + + + QKRG + + T +K++DD+ T + F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLKAAFERIPNDVQTALQTA 91 Query: 376 SEKTDSILQ 350 + + +S Q Sbjct: 92 ARRVESYHQ 100
>NPM_CHICK (P16039) Nucleophosmin (NPM) (Nucleolar phosphoprotein B23)| (Numatrin) (Nucleolar protein NO38) Length = 294 Score = 32.3 bits (72), Expect = 1.1 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Frame = -3 Query: 589 NDDDLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKY 410 ++DDLD +E + +PM ++ ++ ++ + + T KT+ P K Sbjct: 176 DEDDLDDDEEEIKTPMKKPAREPAGKNMQKAKQNGKDSKPST------PASKTKTPDSKK 229 Query: 409 MKDIETKLEK---ESEKTDSILQALVNQGNEKVRRSEERAQSVKNC 281 K + K K E+ + +QA V++G + + A VKNC Sbjct: 230 DKSLTPKTPKVPLSLEEIKAKMQASVDKGCSLPKLEPKFANYVKNC 275
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 32.0 bits (71), Expect = 1.4 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Frame = -3 Query: 577 LDGNEGFVPS--PMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMK 404 L G++G S P S++++ S S L + P K+ + DD+ H K K K Sbjct: 934 LPGSDGAWKSRRPQSSASESESSCSNLGNIRGEPQKQKHSKDDLKGDHTKRAREKSKAKK 993 Query: 403 DIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESV 239 D + K K + E+ ++ Q K ++++ +C A ++ + Sbjct: 994 DKKHKAPKRKQAFHWQPPLEFGDDEEEEMNGKQVTQDPKEKRHVSEKCEAVKDGI 1048
>HISX_NEIMB (Q9JYH8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = -3 Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377 + + + QKRG + + T +K++DD+ T F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91 Query: 376 SEKTDSILQ 350 + + +S Q Sbjct: 92 ARRVESYHQ 100
>HISX_NEIG1 (Q5F7D8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 429 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/69 (21%), Positives = 31/69 (44%) Frame = -3 Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377 + + + QKRG + + T +K++DD+ T F + D++T L+ Sbjct: 32 IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91 Query: 376 SEKTDSILQ 350 + + +S Q Sbjct: 92 ARRVESYHQ 100
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 31.2 bits (69), Expect = 2.3 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 2/128 (1%) Frame = -3 Query: 580 DLDGNEGFVPSPMSTSTQKR--GSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYM 407 D D E P S T+++ GS + + PSK + D R P +K Sbjct: 1004 DKDKREKDKPKVKSDKTKRKSDGSATAKKDNVLKPSKGPQEKVDGDREKSPRSEPPLK-- 1061 Query: 406 KDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFV 227 K ++E+ K DS+ + +Q +EKV + +A S K+ + A +E V+ Sbjct: 1062 -----KAKEEATKIDSVKPSSSSQKDEKVTGTPRKAHS-KSAKEHQEAKPAKDEKVKKDC 1115 Query: 226 ACDLFKEK 203 + D+ EK Sbjct: 1116 SKDIKSEK 1123
>OPTN_RAT (Q8R5M4) Optineurin (FIP-2-like protein)| Length = 585 Score = 31.2 bits (69), Expect = 2.3 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Frame = -3 Query: 580 DLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD 401 +L+ + V S Q RSE++ + + L + TH K K ++ Sbjct: 351 ELNEKQELVYSNRKLELQVESMRSEIKMEQAKTEEEKSRLATLQATHDKLLQEHNKALRT 410 Query: 400 IETKLEKESEKTDSI-LQALVNQGNEKVRRSEERAQS 293 IE ++++EK D + LQ L +EK+ +E+ S Sbjct: 411 IEELTKQQAEKVDKVQLQEL----SEKLELAEQALAS 443
>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding| protein 19) Length = 1895 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = -3 Query: 523 RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQAL 344 +G++ + +KR T+D G T G + Y+K ++ K E +SEK D+ L+ L Sbjct: 275 KGAKGSKMFCKACITKRPLTIDGGGNMGGVTTGDALNYLKAVKDKFE-DSEKYDTFLEVL 333
>OPTN_PIG (Q7YS99) Optineurin| Length = 574 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/79 (24%), Positives = 35/79 (44%) Frame = -3 Query: 529 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQ 350 Q RSE++ + + L + TH + + +K IE +ESEK D + Sbjct: 358 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKV-- 415 Query: 349 ALVNQGNEKVRRSEERAQS 293 ++ + N K+ +E+ S Sbjct: 416 -VLQELNGKLEMAEKALAS 433
>UVE1_SCHPO (Q10988) UV-damage endonuclease (EC 3.-.-.-) (UVDE)| Length = 599 Score = 30.4 bits (67), Expect = 4.0 Identities = 27/102 (26%), Positives = 43/102 (42%) Frame = -3 Query: 589 NDDDLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKY 410 N+ +L G STST+KR S+ ++T S K +++ + R K Sbjct: 87 NETELANISGPHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKK 146 Query: 409 MKDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKN 284 + + E ESE+ S V Q E+ E +S+KN Sbjct: 147 PVNYNSSSESESEEQISKATKKVKQKEEEEYVEEVDEKSLKN 188
>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,| nonerythroid) Length = 3924 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Frame = -3 Query: 583 DDLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLD-DMPRTHGKTRGPFVKYM 407 DDL+ + T K G + E + S K K + D ++ K P + Sbjct: 1609 DDLNTCVPLPKEQLQTVQDKAGKKCEALAVGRSSEKEGKDIPPDETQSTQKQHKPSLGIK 1668 Query: 406 KDIETKLEKESEKTDSILQALVNQGNEKVRRSEE 305 K + KL+++ ++ + LQA + K SEE Sbjct: 1669 KPVRRKLKEKQKQKEEGLQASAEKAELKKGSSEE 1702 Score = 29.6 bits (65), Expect = 6.8 Identities = 28/114 (24%), Positives = 46/114 (40%) Frame = -3 Query: 550 SPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESE 371 S + TS QK + + +P RSK+ D KT+ P VK ET+ E Sbjct: 3329 SDLDTSVQKTVAPQGQDMASIAPDNRSKSESDASSLDSKTKCP-VKTRSYTETETESRER 3387 Query: 370 KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLFK 209 + L++ K+ S +S + ++ES E+F DL++ Sbjct: 3388 AEELELESEEGATRPKILTSRLPVKSRSTTSSCRGGTSPTKESKEHFF--DLYR 3439
>SPD5_CAEEL (P91349) Spindle-defective protein 5| Length = 1198 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 418 VKYMKDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKN 284 + Y+ D+ETKL ++ D QALV N+ + E VKN Sbjct: 289 LNYIDDLETKLADAKKENDKARQALVEYMNKCSKLEHEIRTMVKN 333
>SCONB_EMENI (Q00659) Sulfur metabolite repression control protein| Length = 678 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = +1 Query: 7 KTQEDTHDSRHKRTHMTQDIRLANTDHSAFISRHL 111 +T+ DTHD H ++ + AN + + F++RH+ Sbjct: 39 ETEPDTHDHNHSFSNAKAPAKFANQNVAPFLARHI 73
>RGS1_HUMAN (Q08116) Regulator of G-protein signaling 1 (RGS1) (Early response| protein 1R20) (B-cell activation protein BL34) Length = 196 Score = 30.0 bits (66), Expect = 5.2 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Frame = -3 Query: 460 DDMPRTHGKTRGPFVK-YMKDIETKLE---KESEKTDSILQALVNQGNEKVRRSEERAQS 293 D M + KT G +K Y++ + LE K S+ D + A V Q ++ + + Q+ Sbjct: 23 DKMQKRRPKTFGMDMKAYLRSMIPHLESGMKSSKSKDVLSAAEVMQWSQSLEKLLAN-QT 81 Query: 292 VKNCQNLAIECGASEESVEYFVACDLFKE 206 +N ++ SEE++E+++AC+ +K+ Sbjct: 82 GQNVFGSFLKSEFSEENIEFWLACEDYKK 110
>Y4095_ARATH (Q9M160) Protein At4g00950| Length = 291 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -3 Query: 553 PSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTH 440 P STS+ S S L S +SSP + K+L+ PR H Sbjct: 55 PKQHSTSSSSSSSSSPLTSYSSSPFETHKSLELPPRLH 92
>OPTN_HUMAN (Q96CV9) Optineurin (Optic neuropathy-inducing protein)| (E3-14.7K-interacting protein) (FIP-2) (Huntingtin-interacting protein HYPL) (NEMO-related protein) (Transcription factor IIIA-interacting protein) (TFIIIA-IntP) Length = 577 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/96 (23%), Positives = 40/96 (41%) Frame = -3 Query: 580 DLDGNEGFVPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD 401 +L+ + V + Q SE++ + L + TH K +K Sbjct: 347 ELNEKQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKT 406 Query: 400 IETKLEKESEKTDSILQALVNQGNEKVRRSEERAQS 293 IE KESEK D +A++ + +EK+ +E+ S Sbjct: 407 IEELTRKESEKVD---RAVLKELSEKLELAEKALAS 439
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 29.6 bits (65), Expect = 6.8 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%) Frame = -3 Query: 517 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 374 S+S+ R + SPSKRSK+ D ++ GK R P + MK E K+ Sbjct: 216 SKSKERRKSKSPSKRSKSQDQARKSKSPPLRRRSQEKVGKARSPAEEKMKSEEKGKIKDR 275 Query: 373 EKTDSILQALVNQGNEKVRRSEERAQS 293 +K+ + NE+ R ++++S Sbjct: 276 KKSPIV--------NERSRDRSKKSKS 294
>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2498 Score = 29.6 bits (65), Expect = 6.8 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 8/126 (6%) Frame = -3 Query: 589 NDDDLDGNEGF-----VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPR-THGKTR 428 N +D +G E PSP + G S R+T+S + D + + Sbjct: 713 NPEDSEGAENSSDTESAPSPSPAEAARLGDDSVDRTTSSVSMEAPPEQDAASKPASDSSP 772 Query: 427 GPFVKYMKDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQS--VKNCQNLAIECGA 254 P V+ K ET+ + K + ++ NE+ EER+QS +K+ NL ++ A Sbjct: 773 SPIVENTKPPETQYAELKVKEE------ISTENEQTMEVEERSQSAELKSALNLQVQTKA 826 Query: 253 SEESVE 236 E Sbjct: 827 EPYETE 832
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = -3 Query: 481 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 317 S+R K+LD+M + + R K MKD + KLE E E ++L+ + + E++R Sbjct: 491 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 547 Query: 316 RSEE 305 R EE Sbjct: 548 RMEE 551
>MIAA_BUCAI (P57632) tRNA delta(2)-isopentenylpyrophosphate transferase (EC| 2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPTase) (IPPT) Length = 315 Score = 29.6 bits (65), Expect = 6.8 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -3 Query: 271 AIECGASEESVEYFVACDLFKEKHNRTVFQNMKIPEARLIWLKRW 137 +I C + EY + +K+ N+ + K+ + +L WLK W Sbjct: 241 SIRCIGYRQMWEYLEYKNSYKDMFNKIIHATRKLAKHQLTWLKNW 285
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = -3 Query: 535 STQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSI 356 ST R SR+ R+ S RSK+L ++ GK++ + TK +DSI Sbjct: 161 STSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSI 220 Query: 355 LQALVNQGNEKVRRSEERAQSVKN 284 ++ + + SE + Q+ K+ Sbjct: 221 ARSPC-KSPKGYTNSETKVQTAKH 243
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%) Frame = -3 Query: 481 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 317 S+R K+LD+M + + R K MKD + KLE E E ++L+ + + E++R Sbjct: 483 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 539 Query: 316 RSEE 305 R EE Sbjct: 540 RMEE 543
>LAP4_DROME (Q7KRY7) Protein lap4 (Protein scribble) (Protein smell-impaired)| Length = 1851 Score = 29.6 bits (65), Expect = 6.8 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%) Frame = -3 Query: 541 STSTQK-RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD----IETKLE-- 383 +TST+K S+L+ST +S + +++ T+ P K + D E+ +E Sbjct: 1682 TTSTEKDEEEESQLQSTPASRDGAEEQQEEVRAKPTPTKVP--KSVSDKKRFFESAMEDQ 1739 Query: 382 -KESEKTDSILQALVNQGNEKVRRSEER 302 K ++KTD + L EK+R+ EER Sbjct: 1740 HKPTQKTDKVFSFLSKDEVEKLRQEEER 1767
>YJEP_ECOLI (P39285) Hypothetical mscS family protein yjeP precursor| Length = 1107 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = -3 Query: 385 EKESEKTDSILQALVNQGNEKVRRSEERA 299 EKES++ D+ LQAL NQ N + + ERA Sbjct: 212 EKESQQLDAYLQALRNQLNSQRQLEAERA 240
>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54| kDa nuclear protein) (p54) Length = 484 Score = 29.3 bits (64), Expect = 8.9 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = -3 Query: 550 SPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESE 371 +P S+ ++ SRS RS + S S+R R+H + RG + K +++ E Sbjct: 260 TPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKE 319 Query: 370 KTDS 359 K S Sbjct: 320 KKRS 323
>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase| 1) (Cyclophilin) (BmCYP-1) Length = 843 Score = 29.3 bits (64), Expect = 8.9 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -3 Query: 586 DDDLDGNEGFVPSPMSTSTQKRGSRSELRSTASS--PSKRSKTLD 458 D D SP S+S+ S S+ RSTASS SKRS + D Sbjct: 788 DSDRHSRRSRKRSPSSSSSSSESSSSDSRSTASSSASSKRSSSSD 832 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,817,625 Number of Sequences: 219361 Number of extensions: 1322488 Number of successful extensions: 3804 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3800 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)