>CWLO_BACLD (Q65NQ9) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)|
           (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase)
          Length = 452

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
 Frame = -2

Query: 538 TSTQKRG---SRSELRSTASSPSKR-SKTLDDMPRTHGKTRGPFVKYMKD---IETKLEK 380
           TS QK+     RSE+ S   S  K  +K  D+  +  GK +    K ++    IE K EK
Sbjct: 32  TSQQKQEIQQKRSEVNSGIESKRKEIAKLQDEQKKLEGKIQELDKKALETSNKIEDK-EK 90

Query: 379 ESEKTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLF 212
           E++KT   ++AL  +  E  +R EER++ +KN      E G S+  +   +    F
Sbjct: 91  ENKKTKKEVEALKKEIKETEKRIEERSKVIKNRVRSLQENGGSQNYLNVLLGAQSF 146

>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4
           kinase)
          Length = 1007

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
 Frame = -2

Query: 517 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 374
           S+S+ R  + SPSKRSK+ D   ++             GK R P      D + K+E +S
Sbjct: 215 SKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSP-----TDDKVKIEDKS 269

Query: 373 EKTDSILQALVNQGNEKVRRSEERA 299
           +  D     ++N+   + R  + R+
Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRS 294

>HISX_NEIMA (Q9JTH9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/69 (21%), Positives = 32/69 (46%)
 Frame = -2

Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377
           + + +    QKRG  + +  T       +K++DD+  T    +  F +   D++T L+  
Sbjct: 32  IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLKAAFERIPNDVQTALQTA 91

Query: 376 SEKTDSILQ 350
           + + +S  Q
Sbjct: 92  ARRVESYHQ 100

>A60DA_DROME (P91927) Calcium-binding mitochondrial protein Anon-60Da|
          Length = 1013

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 3/151 (1%)
 Frame = -2

Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSK-RSKTLDDMPRTHGKTRGPFVKYMKDIETKLEK 380
           +PS   TST ++    +  S     +K   +TLD MP  H +      K  +   TK+  
Sbjct: 264 LPSTFQTSTDRQEKLRQSLSVRLEVAKFLQQTLDQMPVQHKEHSSEEAKQFEAFFTKIRN 323

Query: 379 ESE--KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLFKE 206
            +E    D I++      +E    S  R Q    C+ L +    +   + + +   L   
Sbjct: 324 PTEPVSNDEIIKFAKRFDDEITLDSLSREQLAALCRVLELNTIGTTTLLRFQLRLKLRSL 383

Query: 205 KHNRTVFQNMKIPEARLIWLKRWCRAKNMYA 113
             +  V     +    L+ L++ C+A+ M A
Sbjct: 384 ATDDRVIAREGVDSLDLLELQQACKARGMRA 414

>HISX_NEIMB (Q9JYH8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = -2

Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377
           + + +    QKRG  + +  T       +K++DD+  T       F +   D++T L+  
Sbjct: 32  IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91

Query: 376 SEKTDSILQ 350
           + + +S  Q
Sbjct: 92  ARRVESYHQ 100

>HISX_NEIG1 (Q5F7D8) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = -2

Query: 556 VPSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKE 377
           + + +    QKRG  + +  T       +K++DD+  T       F +   D++T L+  
Sbjct: 32  IVADICADVQKRGDAALIEYTNKFDQTNAKSIDDLILTQADLNAAFERIPNDVQTALQTA 91

Query: 376 SEKTDSILQ 350
           + + +S  Q
Sbjct: 92  ARRVESYHQ 100

>OPTN_MOUSE (Q8K3K8) Optineurin|
          Length = 584

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = -2

Query: 529 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQ 350
           Q    RSE++   +   +    L  +  TH K      K +K IE   ++++EK D +  
Sbjct: 367 QVESMRSEIKMEQAKTEEEKSRLATLQATHNKLLQEHNKALKTIEELTKQQAEKVDKM-- 424

Query: 349 ALVNQGNEKVRRSEERAQS 293
            L+ + +EK+  +E+   S
Sbjct: 425 -LLQELSEKLELAEQALAS 442

>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding|
           protein 19)
          Length = 1895

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 523 RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQAL 344
           +G++       +  +KR  T+D      G T G  + Y+K ++ K E +SEK D+ L+ L
Sbjct: 275 KGAKGSKMFCKACITKRPLTIDGGGNMGGVTTGDALNYLKAVKDKFE-DSEKYDTFLEVL 333

>OPTN_PIG (Q7YS99) Optineurin|
          Length = 574

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -2

Query: 529 QKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSILQ 350
           Q    RSE++   +   +    L  +  TH +    +   +K IE    +ESEK D +  
Sbjct: 358 QVESMRSEIKMEQAKTEEEKSKLTTLQLTHNRLLQEYNNALKTIEELKRRESEKVDKV-- 415

Query: 349 ALVNQGNEKVRRSEERAQS 293
            ++ + N K+  +E+   S
Sbjct: 416 -VLQELNGKLEMAEKALAS 433

>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 21/103 (20%), Positives = 42/103 (40%)
 Frame = -2

Query: 547  PMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEK 368
            P S++++   S S L +    P K+  + DD+   H K      K  KD + K  K  + 
Sbjct: 946  PQSSASESESSCSNLGNIRGEPQKQKHSKDDLKGDHTKRAREKSKAKKDKKHKAPKRKQA 1005

Query: 367  TDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESV 239
                         E+    ++  Q  K  ++++ +C A ++ +
Sbjct: 1006 FHWQPPLEFGDDEEEEMNGKQVTQDPKEKRHVSEKCEAVKDGI 1048

>Y4095_ARATH (Q9M160) Protein At4g00950|
          Length = 291

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 553 PSPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTH 440
           P   STS+    S S L S +SSP +  K+L+  PR H
Sbjct: 55  PKQHSTSSSSSSSSSPLTSYSSSPFETHKSLELPPRLH 92

>RGS1_HUMAN (Q08116) Regulator of G-protein signaling 1 (RGS1) (Early response|
           protein 1R20) (B-cell activation protein BL34)
          Length = 196

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = -2

Query: 460 DDMPRTHGKTRGPFVK-YMKDIETKLE---KESEKTDSILQALVNQGNEKVRRSEERAQS 293
           D M +   KT G  +K Y++ +   LE   K S+  D +  A V Q ++ + +     Q+
Sbjct: 23  DKMQKRRPKTFGMDMKAYLRSMIPHLESGMKSSKSKDVLSAAEVMQWSQSLEKLLAN-QT 81

Query: 292 VKNCQNLAIECGASEESVEYFVACDLFKE 206
            +N     ++   SEE++E+++AC+ +K+
Sbjct: 82  GQNVFGSFLKSEFSEENIEFWLACEDYKK 110

>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (Protein grappa) (DOT1-like protein)
            (dDOT1L)
          Length = 1848

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 556  QSLHCHPGHHHYLTPNNLLSQEHKQMNHPQRPH 654
            Q  H H  HHH+  P + L Q H Q  HP + H
Sbjct: 1233 QQQHQHHHHHHHHHPQHRLPQ-HVQHQHPHQHH 1264

>SPD5_CAEEL (P91349) Spindle-defective protein 5|
          Length = 1198

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 418 VKYMKDIETKLEKESEKTDSILQALVNQGNEKVRRSEERAQSVKN 284
           + Y+ D+ETKL    ++ D   QALV   N+  +   E    VKN
Sbjct: 289 LNYIDDLETKLADAKKENDKARQALVEYMNKCSKLEHEIRTMVKN 333

>SCONB_EMENI (Q00659) Sulfur metabolite repression control protein|
          Length = 678

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   KTQEDTHDSRHKRTHMTQDIRLANTDHSAFISRHL 111
           +T+ DTHD  H  ++     + AN + + F++RH+
Sbjct: 39  ETEPDTHDHNHSFSNAKAPAKFANQNVAPFLARHI 73

>AMY2_SCHPO (O42918) Probable alpha-amylase meu7 precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (Meiotic
           expression up-regulated protein 7)
          Length = 774

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 550 WVQSLHCHPGHHHYLTPNNLLSQEHKQMNHPQRPH 654
           W    HCH G      P+N+   +HK   H +  H
Sbjct: 364 WKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCH 398

>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
 Frame = -2

Query: 517 SRSELRSTASSPSKRSKTLDDMPRTH------------GKTRGPFVKYMKDIETKLEKES 374
           S+S+ R  + SPSKRSK+ D   ++             GK R P  + MK  E    K+ 
Sbjct: 216 SKSKERRKSKSPSKRSKSQDQARKSKSPPLRRRSQEKVGKARSPAEEKMKSEEKGKIKDR 275

Query: 373 EKTDSILQALVNQGNEKVRRSEERAQS 293
           +K+  +        NE+ R   ++++S
Sbjct: 276 KKSPIV--------NERSRDRSKKSKS 294

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = -2

Query: 481 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 317
           S+R K+LD+M +   + R    K MKD + KLE E E        ++L+  + +  E++R
Sbjct: 491 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 547

Query: 316 RSEE 305
           R EE
Sbjct: 548 RMEE 551

>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 22/84 (26%), Positives = 38/84 (45%)
 Frame = -2

Query: 535 STQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKTDSI 356
           ST  R SR+  R+  S    RSK+L    ++ GK++    +      TK       +DSI
Sbjct: 161 STSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRHSDSI 220

Query: 355 LQALVNQGNEKVRRSEERAQSVKN 284
            ++   +  +    SE + Q+ K+
Sbjct: 221 ARSPC-KSPKGYTNSETKVQTAKH 243

>MIAA_BUCAI (P57632) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 315

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 271 AIECGASEESVEYFVACDLFKEKHNRTVFQNMKIPEARLIWLKRW 137
           +I C    +  EY    + +K+  N+ +    K+ + +L WLK W
Sbjct: 241 SIRCIGYRQMWEYLEYKNSYKDMFNKIIHATRKLAKHQLTWLKNW 285

>LAP4_DROME (Q7KRY7) Protein lap4 (Protein scribble) (Protein smell-impaired)|
          Length = 1851

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
 Frame = -2

Query: 541  STSTQK-RGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKD----IETKLE-- 383
            +TST+K     S+L+ST +S     +  +++      T+ P  K + D     E+ +E  
Sbjct: 1682 TTSTEKDEEEESQLQSTPASRDGAEEQQEEVRAKPTPTKVP--KSVSDKKRFFESAMEDQ 1739

Query: 382  -KESEKTDSILQALVNQGNEKVRRSEER 302
             K ++KTD +   L     EK+R+ EER
Sbjct: 1740 HKPTQKTDKVFSFLSKDEVEKLRQEEER 1767

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = -2

Query: 481 SKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESEKT-----DSILQALVNQGNEKVR 317
           S+R K+LD+M +   + R    K MKD + KLE E E        ++L+  + +  E++R
Sbjct: 483 SQRWKSLDEMEK---QQREQVEKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELR 539

Query: 316 RSEE 305
           R EE
Sbjct: 540 RMEE 543

>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,|
            nonerythroid)
          Length = 3924

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 28/114 (24%), Positives = 46/114 (40%)
 Frame = -2

Query: 550  SPMSTSTQKRGSRSELRSTASSPSKRSKTLDDMPRTHGKTRGPFVKYMKDIETKLEKESE 371
            S + TS QK  +       + +P  RSK+  D      KT+ P VK     ET+ E    
Sbjct: 3329 SDLDTSVQKTVAPQGQDMASIAPDNRSKSESDASSLDSKTKCP-VKTRSYTETETESRER 3387

Query: 370  KTDSILQALVNQGNEKVRRSEERAQSVKNCQNLAIECGASEESVEYFVACDLFK 209
              +  L++       K+  S    +S     +       ++ES E+F   DL++
Sbjct: 3388 AEELELESEEGATRPKILTSRLPVKSRSTTSSCRGGTSPTKESKEHFF--DLYR 3439



 Score = 29.6 bits (65), Expect = 10.0
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
 Frame = -2

Query: 556  VPSP---MSTSTQKRGSRSELRSTASSPSKRSKTLD-DMPRTHGKTRGPFVKYMKDIETK 389
            VP P   + T   K G + E  +   S  K  K +  D  ++  K   P +   K +  K
Sbjct: 1615 VPLPKEQLQTVQDKAGKKCEALAVGRSSEKEGKDIPPDETQSTQKQHKPSLGIKKPVRRK 1674

Query: 388  LEKESEKTDSILQALVNQGNEKVRRSEE 305
            L+++ ++ +  LQA   +   K   SEE
Sbjct: 1675 LKEKQKQKEEGLQASAEKAELKKGSSEE 1702


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,944,505
Number of Sequences: 219361
Number of extensions: 1698205
Number of successful extensions: 4666
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4656
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)