Clone Name | rbasdl24 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_192107.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 196 bits (99), Expect = 6e-47 Identities = 234/279 (83%) Strand = Plus / Minus Query: 315 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggtgtttggcc 374 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| ||||| Sbjct: 642 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggtaactggcc 583 Query: 375 ttggcggactgatgatccggaatcgtccagcagatcttcgtatttcttattgaattctgc 434 ||||| |||| ||||| || | ||||||||||||||||||||||| || | ||||| Sbjct: 582 ctggcgtgctgaggatcctgatccatccagcagatcttcgtatttcttgttaagctctgc 523 Query: 435 ttcggtattagatgaatcccaatcaagattgtactcatgagcaatagctttcaaaacctt 494 ||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||| |||||| Sbjct: 522 ttcagtattcgatgagtcccattcaaggccatactcttgagcaatagctttcagaacctt 463 Query: 495 caactttgattccgctgatggagccttaactgaaagcttctcaattatagtgcgattaac 554 || ||||||||| |||||||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct: 462 cagctttgattcagctgatggggccttcactgagagcttctcgattattgtacgattaac 403 Query: 555 accacaatcagggcgcaattccatagcagcagcaacaaa 593 ||| | ||||| |||||||||||||| ||||||||||| Sbjct: 402 accgctgtcaggacgcaattccatagctgcagcaacaaa 364 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 97 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 156 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 869 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 810 Query: 157 ga 158 || Sbjct: 809 ga 808
>dbj|AK073996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071E20, full insert sequence Length = 1236 Score = 196 bits (99), Expect = 6e-47 Identities = 234/279 (83%) Strand = Plus / Minus Query: 315 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggtgtttggcc 374 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| ||||| Sbjct: 763 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggtaactggcc 704 Query: 375 ttggcggactgatgatccggaatcgtccagcagatcttcgtatttcttattgaattctgc 434 ||||| |||| ||||| || | ||||||||||||||||||||||| || | ||||| Sbjct: 703 ctggcgtgctgaggatcctgatccatccagcagatcttcgtatttcttgttaagctctgc 644 Query: 435 ttcggtattagatgaatcccaatcaagattgtactcatgagcaatagctttcaaaacctt 494 ||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||| |||||| Sbjct: 643 ttcagtattcgatgagtcccattcaaggccatactcttgagcaatagctttcagaacctt 584 Query: 495 caactttgattccgctgatggagccttaactgaaagcttctcaattatagtgcgattaac 554 || ||||||||| |||||||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct: 583 cagctttgattcagctgatggggccttcactgagagcttctcgattattgtacgattaac 524 Query: 555 accacaatcagggcgcaattccatagcagcagcaacaaa 593 ||| | ||||| |||||||||||||| ||||||||||| Sbjct: 523 accgctgtcaggacgcaattccatagctgcagcaacaaa 485 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 97 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 156 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 990 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 931 Query: 157 ga 158 || Sbjct: 930 ga 929
>dbj|AK061158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H01, full insert sequence Length = 1162 Score = 196 bits (99), Expect = 6e-47 Identities = 234/279 (83%) Strand = Plus / Minus Query: 315 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggtgtttggcc 374 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| ||||| Sbjct: 760 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggtaactggcc 701 Query: 375 ttggcggactgatgatccggaatcgtccagcagatcttcgtatttcttattgaattctgc 434 ||||| |||| ||||| || | ||||||||||||||||||||||| || | ||||| Sbjct: 700 ctggcgtgctgaggatcctgatccatccagcagatcttcgtatttcttgttaagctctgc 641 Query: 435 ttcggtattagatgaatcccaatcaagattgtactcatgagcaatagctttcaaaacctt 494 ||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||| |||||| Sbjct: 640 ttcagtattcgatgagtcccattcaaggccatactcttgagcaatagctttcagaacctt 581 Query: 495 caactttgattccgctgatggagccttaactgaaagcttctcaattatagtgcgattaac 554 || ||||||||| |||||||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct: 580 cagctttgattcagctgatggggccttcactgagagcttctcgattattgtacgattaac 521 Query: 555 accacaatcagggcgcaattccatagcagcagcaacaaa 593 ||| | ||||| |||||||||||||| ||||||||||| Sbjct: 520 accgctgtcaggacgcaattccatagctgcagcaacaaa 482 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 97 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 156 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 987 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 928 Query: 157 ga 158 || Sbjct: 927 ga 926
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 123 bits (62), Expect = 7e-25 Identities = 122/142 (85%) Strand = Plus / Plus Query: 401 ccagcagatcttcgtatttcttattgaattctgcttcggtattagatgaatcccaatcaa 460 |||||||||||||||||||||| || | |||||||| ||||| ||||| ||||| |||| Sbjct: 28365504 ccagcagatcttcgtatttcttgttaagctctgcttcagtattcgatgagtcccattcaa 28365563 Query: 461 gattgtactcatgagcaatagctttcaaaaccttcaactttgattccgctgatggagcct 520 | ||||| |||||||||||||||| |||||||| ||||||||| |||||||| |||| Sbjct: 28365564 ggccatactcttgagcaatagctttcagaaccttcagctttgattcagctgatggggcct 28365623 Query: 521 taactgaaagcttctcaattat 542 | ||||| |||||||| ||||| Sbjct: 28365624 tcactgagagcttctcgattat 28365645 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 97 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 156 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 28364422 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 28364481 Query: 157 ga 158 || Sbjct: 28364482 ga 28364483 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 547 cgattaacaccacaatcagggcgcaattccatagcagcagcaacaaa 593 ||||||||||| | ||||| |||||||||||||| ||||||||||| Sbjct: 28365778 cgattaacaccgctgtcaggacgcaattccatagctgcagcaacaaa 28365824 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 315 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 366 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 28364649 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 28364700
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 123 bits (62), Expect = 7e-25 Identities = 122/142 (85%) Strand = Plus / Plus Query: 401 ccagcagatcttcgtatttcttattgaattctgcttcggtattagatgaatcccaatcaa 460 |||||||||||||||||||||| || | |||||||| ||||| ||||| ||||| |||| Sbjct: 80604 ccagcagatcttcgtatttcttgttaagctctgcttcagtattcgatgagtcccattcaa 80663 Query: 461 gattgtactcatgagcaatagctttcaaaaccttcaactttgattccgctgatggagcct 520 | ||||| |||||||||||||||| |||||||| ||||||||| |||||||| |||| Sbjct: 80664 ggccatactcttgagcaatagctttcagaaccttcagctttgattcagctgatggggcct 80723 Query: 521 taactgaaagcttctcaattat 542 | ||||| |||||||| ||||| Sbjct: 80724 tcactgagagcttctcgattat 80745 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 97 gcggcggaggcacgggtggctgcaacaatggcagctcgggccttttctagcacgtctgac 156 ||||||||||| ||| |||||||| |||||||||||||||| ||||| || ||||| ||| Sbjct: 79522 gcggcggaggcgcggttggctgcagcaatggcagctcgggctttttcaagaacgtccgac 79581 Query: 157 ga 158 || Sbjct: 79582 ga 79583 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 547 cgattaacaccacaatcagggcgcaattccatagcagcagcaacaaa 593 ||||||||||| | ||||| |||||||||||||| ||||||||||| Sbjct: 80878 cgattaacaccgctgtcaggacgcaattccatagctgcagcaacaaa 80924 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 315 cgatggcttatctctggaaatggaagagcctggagagctctcaattttaggt 366 ||||||| |||||||||||||||||| |||||||| |||| ||| ||||| Sbjct: 79749 cgatggcatatctctggaaatggaagcaactggagagttctcgattataggt 79800
>dbj|AP001300.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F5N5 Length = 71327 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 273 ctcgggagttttatttttgcttgtgtc 299 ||||||| ||||||||||||||||||| Sbjct: 12026 ctcgggacttttatttttgcttgtgtc 12000
>gb|U76670.1|ATU76670 Arabidopsis thaliana recA-like protein (AtDMC1) gene, complete cds Length = 8017 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 273 ctcgggagttttatttttgcttgtgtc 299 ||||||| ||||||||||||||||||| Sbjct: 5426 ctcgggacttttatttttgcttgtgtc 5452
>dbj|D45415.1|ATHARLIM15 Arabidopsis thaliana ArLIM15 gene for recA-like protein, complete cds (exon1-15) Length = 5135 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 273 ctcgggagttttatttttgcttgtgtc 299 ||||||| ||||||||||||||||||| Sbjct: 2074 ctcgggacttttatttttgcttgtgtc 2100
>ref|NM_202181.1| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.2 mRNA, complete cds Length = 1421 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 742 gaaagcttctcaatgatagtacgattgacaccagaatc 705
>ref|NM_202182.1| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.3 mRNA, complete cds Length = 1299 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 595 gaaagcttctcaatgatagtacgattgacaccagaatc 558
>ref|NM_102353.2| Arabidopsis thaliana unknown protein AT1G25420 transcript variant AT1G25420.1 mRNA, complete cds Length = 1305 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 558 gaaagcttctcaatgatagtacgattgacaccagaatc 521
>gb|AC158619.12| Mus musculus 10 BAC RP23-291O3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 250421 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 59 ctttaaccttgttaacaagttctgcc 84 |||||||||| ||||||||||||||| Sbjct: 203139 ctttaaccttattaacaagttctgcc 203164
>gb|AY143866.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds Length = 972 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 476 gaaagcttctcaatgatagtacgattgacaccagaatc 439
>gb|AY095990.1| Arabidopsis thaliana At1g25420/F2J7_16 mRNA, complete cds Length = 1082 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 512 gaaagcttctcaatgatagtacgattgacaccagaatc 475
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 59 ctttaaccttgttaacaagttctgcc 84 |||||||||| ||||||||||||||| Sbjct: 192475 ctttaaccttattaacaagttctgcc 192450
>emb|BX817810.1|CNS0AB5Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1296 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 592 gaaagcttctcaatgatagtacgattgacaccagaatc 555
>gb|AY088569.1| Arabidopsis thaliana clone 7917 mRNA, complete sequence Length = 1306 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 526 gaaagcttctcaattatagtgcgattaacaccacaatc 563 |||||||||||||| ||||| ||||| |||||| |||| Sbjct: 558 gaaagcttctcaatgatagtacgattgacaccagaatc 521
>ref|XM_480332.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2091 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 578 tagcagcagcaacaaactctttccc 602 |||| |||||||||||||||||||| Sbjct: 545 tagctgcagcaacaaactctttccc 521
>gb|AY622606.1| Candida dubliniensis MTL alpha 2, OPB alpha, PIK alpha, and MTL alpha 1 genes, complete cds; and PAP alpha gene, partial cds Length = 8593 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 44 atcattgagttgtaactttaacctt 68 ||||||||||||||||| ||||||| Sbjct: 6574 atcattgagttgtaactgtaacctt 6550
>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence Length = 187269 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 37681 caacaatggcagctcgggcct 37661
>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence Length = 208499 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tctggaaatggaagagcctggagag 351 ||||||||||| ||||||||||||| Sbjct: 97403 tctggaaatggcagagcctggagag 97427
>gb|AC129215.3| Mus musculus BAC clone RP24-435H23 from chromosome 5, complete sequence Length = 140936 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 5293 caacaatggcagctcgggcct 5313
>gb|AC121855.3| Mus musculus BAC clone RP24-97C18 from chromosome 6, complete sequence Length = 192062 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 tcaattttaggtgtttggcct 375 ||||||||||||||||||||| Sbjct: 123122 tcaattttaggtgtttggcct 123102
>gb|AC122271.4| Mus musculus BAC clone RP23-222D3 from 18, complete sequence Length = 199493 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 574 tccatagcagcagcaacaaactctt 598 ||||||||||||||||||| ||||| Sbjct: 71739 tccatagcagcagcaacaagctctt 71715
>gb|BC038396.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone MGC:18969 IMAGE:3987227), complete cds Length = 2449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 2014 caacaatggcagctcgggcct 1994
>gb|BC023072.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone IMAGE:5357477), with apparent retained intron Length = 2903 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 2474 caacaatggcagctcgggcct 2454
>gb|BC021421.1| Mus musculus TRAF type zinc finger domain containing 1, mRNA (cDNA clone IMAGE:5012211), containing frame-shift errors Length = 1271 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 814 caacaatggcagctcgggcct 794
>dbj|AK150038.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530123D08 product:FLN29 gene product, full insert sequence Length = 2447 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 2039 caacaatggcagctcgggcct 2019
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 tggtggcagcatatgttcttg 247 ||||||||||||||||||||| Sbjct: 40958 tggtggcagcatatgttcttg 40978
>gb|AC007768.5| Homo sapiens chromosome 18, clone RP11-540M4, complete sequence Length = 175579 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 tggtggcagcatatgttcttg 247 ||||||||||||||||||||| Sbjct: 128090 tggtggcagcatatgttcttg 128110
>dbj|AK003586.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110008K06 product:hypothetical protein, full insert sequence Length = 933 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 523 caacaatggcagctcgggcct 503
>ref|NM_172275.1| Mus musculus TRAF type zinc finger domain containing 1 (Trafd1), mRNA Length = 2449 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 2014 caacaatggcagctcgggcct 1994
>dbj|AK042299.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630079M19 product:hypothetical protein, full insert sequence Length = 1124 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 716 caacaatggcagctcgggcct 696
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 578 tagcagcagcaacaaactctttccc 602 |||| |||||||||||||||||||| Sbjct: 4381134 tagctgcagcaacaaactctttccc 4381158
>dbj|AP005164.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03 Length = 183623 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 578 tagcagcagcaacaaactctttccc 602 |||| |||||||||||||||||||| Sbjct: 143928 tagctgcagcaacaaactctttccc 143952
>dbj|AK211451.1| Mus musculus cDNA, clone:Y2G0121M21, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000042312, based on BLAT search Length = 405 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 164 caacaatggcagctcgggcct 144
>dbj|AK212088.1| Mus musculus cDNA, clone:Y2G0123N06, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000042312, based on BLAT search Length = 408 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 caacaatggcagctcgggcct 139 ||||||||||||||||||||| Sbjct: 168 caacaatggcagctcgggcct 148
>dbj|AP003882.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1134_B10 Length = 115074 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 578 tagcagcagcaacaaactctttccc 602 |||| |||||||||||||||||||| Sbjct: 28310 tagctgcagcaacaaactctttccc 28334
>dbj|AK072367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075K04, full insert sequence Length = 2090 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 578 tagcagcagcaacaaactctttccc 602 |||| |||||||||||||||||||| Sbjct: 545 tagctgcagcaacaaactctttccc 521
>ref|XM_509728.1| PREDICTED: Pan troglodytes similar to KIAA0865 protein (LOC452655), mRNA Length = 1065 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aggcacaaatcattgagttg 55 |||||||||||||||||||| Sbjct: 401 aggcacaaatcattgagttg 382
>gb|AC161798.6| Mus musculus chromosome 7, clone RP23-267I20, complete sequence Length = 182519 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 86509 tggctgcaacaatggcagct 86528
>ref|NM_177250.2| Mus musculus leucine rich repeat neuronal 6D (Lrrn6d), mRNA Length = 2943 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gtccaggcggcggcggaggc 107 |||||||||||||||||||| Sbjct: 1404 gtccaggcggcggcggaggc 1385
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 91809 ggcggcggcggaggcacggg 91828
>gb|AC134572.4| Mus musculus BAC clone RP23-435M15 from chromosome 3, complete sequence Length = 202037 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agttttatttttgcttgtgt 298 |||||||||||||||||||| Sbjct: 175194 agttttatttttgcttgtgt 175175
>gb|AC132428.3| Mus musculus BAC clone RP23-203K20 from chromosome 7, complete sequence Length = 194926 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 18280 tggctgcaacaatggcagct 18261
>ref|XM_540117.2| PREDICTED: Canis familiaris similar to Potassium channel subfamily K member 3 (Acid-sensitive potassium channel protein TASK-1) (TWIK-related acid-sensitive K(+) channel 1) (Two pore potassium channel KT3.1) (LOC483002), mRNA Length = 1188 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ggcggcggcggaggcacgggtggc 116 ||||||||||| |||||||||||| Sbjct: 811 ggcggcggcgggggcacgggtggc 834
>gb|AC122299.5| Mus musculus BAC clone RP23-270L23 from chromosome 5, complete sequence Length = 209091 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 124499 tggctgcaacaatggcagct 124518
>gb|AC131726.3| Mus musculus BAC clone RP23-132P9 from 3, complete sequence Length = 190554 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agttttatttttgcttgtgt 298 |||||||||||||||||||| Sbjct: 21254 agttttatttttgcttgtgt 21235
>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence Length = 190130 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gtccaggcggcggcggaggc 107 |||||||||||||||||||| Sbjct: 133691 gtccaggcggcggcggaggc 133710
>ref|XM_738042.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000399.01.0) partial mRNA Length = 2373 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ttttatttttgcttgtgtcg 300 |||||||||||||||||||| Sbjct: 613 ttttatttttgcttgtgtcg 594
>ref|XM_661388.1| Cryptosporidium hominis TU502 ZW18 protein (Chro.30014) partial mRNA Length = 3627 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 caaaaccttcaactttgatt 505 |||||||||||||||||||| Sbjct: 2492 caaaaccttcaactttgatt 2511
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 atcgtccagcagatcttcgt 415 |||||||||||||||||||| Sbjct: 145588 atcgtccagcagatcttcgt 145569
>emb|AL590083.8| Human DNA sequence from clone RP11-475D8 on chromosome X Contains a novel gene, the GPR23 gene for G protein-coupled receptor 23 and a 60S ribosomal protein L7 (RPL7) pseudogene, complete sequence Length = 127780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 agttttatttttgcttgtgt 298 |||||||||||||||||||| Sbjct: 72308 agttttatttttgcttgtgt 72289
>emb|AL353143.14| Human DNA sequence from clone RP11-383F12 on chromosome 13 Contains part of a novel gene (including KIAA0865), possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and a novel gene, complete sequence Length = 170276 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aggcacaaatcattgagttg 55 |||||||||||||||||||| Sbjct: 146067 aggcacaaatcattgagttg 146048
>emb|AL033529.25|HS27O5 Human DNA sequence from clone RP1-27O5 on chromosome 1p34.1-35.3 Contains the 3' end of the ZBTB8 gene for zinc finger and BTB domain containing 8, the 3' end of the gene for archease (ARCH) and two CpG islands, complete sequence Length = 147167 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 aaaccttcaactttgattcc 507 |||||||||||||||||||| Sbjct: 25661 aaaccttcaactttgattcc 25642
>emb|X56779.1|LSYFISP L.stagnalis L. mRNA for Yol Fer gene Length = 1147 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 586 gcaacaaactctttcccata 605 |||||||||||||||||||| Sbjct: 70 gcaacaaactctttcccata 51
>emb|AL606634.2|OSJN00066 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072N21, complete sequence Length = 130433 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 86426 ggcggcggcggaggcacggg 86407
>emb|AL590146.2| Zebrafish DNA sequence from clone RP71-20I5 in linkage group 9 Contains a gene for a novel protein similar to human FLJ20730 protein, a gene for a novel protein similar to rat steroid sensitive gene-1 protein (SSG-1), a gene for a novel protein similar to vertebrate coagulation factor V and VIII, a gene for a novel protein similar to human G-protein coupled receptor RE2, a gene for a novel transcript and a CpG island, complete sequence Length = 121086 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 agttttatttttgcttgtgt 298 |||||||||||||||||||| Sbjct: 35641 agttttatttttgcttgtgt 35660
>emb|AL713962.14| Mouse DNA sequence from clone RP23-3D5 on chromosome 11, complete sequence Length = 230198 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 gcagcatatgttcttgaact 251 |||||||||||||||||||| Sbjct: 55473 gcagcatatgttcttgaact 55454
>gb|AC091521.19| Mus musculus chromosome 1 clone rp23-145f9, complete sequence Length = 198784 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 112961 tggctgcaacaatggcagct 112942
>gb|AC105343.4| Homo sapiens BAC clone RP11-423J7 from 4, complete sequence Length = 155217 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 ttccgctgatggagccttaactga 527 |||| ||||||||||||||||||| Sbjct: 87533 ttcctctgatggagccttaactga 87510
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tccaggcggcggcggaggca 108 |||||||||||||||||||| Sbjct: 4159906 tccaggcggcggcggaggca 4159887
>ref|XM_625319.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_50), partial mRNA Length = 3627 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 caaaaccttcaactttgatt 505 |||||||||||||||||||| Sbjct: 2492 caaaaccttcaactttgatt 2511
>gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone BACR09N24, complete sequence Length = 158758 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgaaagcttctcaatta 541 |||||||||||||||||||| Sbjct: 13300 aactgaaagcttctcaatta 13319
>gb|AC092225.1|AC092225 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone BACR18J08, complete sequence Length = 186803 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgaaagcttctcaatta 541 |||||||||||||||||||| Sbjct: 158710 aactgaaagcttctcaatta 158729
>dbj|AK042286.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630078J04 product:hypothetical Cysteine-rich flanking region, C-terminal/Leucine-rich repeat/Leucine-rich repeat, typical subtype containing protein, full insert sequence Length = 2178 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gtccaggcggcggcggaggc 107 |||||||||||||||||||| Sbjct: 2105 gtccaggcggcggcggaggc 2086
>dbj|AK040952.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530050P17 product:hypothetical Cysteine-rich flanking region, C-terminal/Cysteine-rich flanking region, N-terminal/Leucine-rich repeat/Immunoglobulin and major histocompatibility complex domain/Immunoglobulin C-2 type/Leucine-rich repeat, typical subtype/Immunoglobulin subtype containing protein, full insert sequence Length = 2943 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gtccaggcggcggcggaggc 107 |||||||||||||||||||| Sbjct: 1404 gtccaggcggcggcggaggc 1385
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 8275913 ggcggcggcggaggcacggg 8275894
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 7725146 ggcggcggcggaggcacggg 7725127
>ref|NM_015011.1| Homo sapiens myosin heavy chain Myr 8 (MYR8), mRNA Length = 6874 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aggcacaaatcattgagttg 55 |||||||||||||||||||| Sbjct: 3560 aggcacaaatcattgagttg 3541
>gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, complete sequence Length = 195635 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ctttcaaaaccttcaacttt 501 |||||||||||||||||||| Sbjct: 52761 ctttcaaaaccttcaacttt 52742
>ref|XM_342474.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA A930018P22 (LOC362175), mRNA Length = 814 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccaggcggcggcggaggcac 109 |||||||||||||||||||| Sbjct: 307 ccaggcggcggcggaggcac 288
>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22 Length = 77758 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccaatcaagattgtactcat 472 |||||||||||||||||||| Sbjct: 72574 ccaatcaagattgtactcat 72593
>dbj|AK120678.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162H21, full insert sequence Length = 1558 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 155 ggcggcggcggaggcacggg 174
>gb|AE003642.3| Drosophila melanogaster chromosome 2L, section 51 of 83 of the complete sequence Length = 276521 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 aactgaaagcttctcaatta 541 |||||||||||||||||||| Sbjct: 104935 aactgaaagcttctcaatta 104916
>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete sequence Length = 233270 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 56538 tggctgcaacaatggcagct 56519
>dbj|AB020672.2| Homo sapiens mRNA for KIAA0865 protein, partial cds Length = 6864 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 aggcacaaatcattgagttg 55 |||||||||||||||||||| Sbjct: 3560 aggcacaaatcattgagttg 3541
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggcggcggcggaggcacggg 112 |||||||||||||||||||| Sbjct: 7795233 ggcggcggcggaggcacggg 7795214
>emb|X69752.1|CHRCRBCL R.cathartica chloroplast rbcL gene for ribulose-1,5-biphosphate-carboxylase and promoter region Length = 956 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ttcgtatttcttattgaatt 430 |||||||||||||||||||| Sbjct: 90 ttcgtatttcttattgaatt 71
>gb|AC167659.7| Mus musculus chromosome 7, clone RP23-165I8, complete sequence Length = 248723 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tggctgcaacaatggcagct 132 |||||||||||||||||||| Sbjct: 91606 tggctgcaacaatggcagct 91587 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,922,823 Number of Sequences: 3902068 Number of extensions: 5922823 Number of successful extensions: 146104 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145569 Number of HSP's gapped (non-prelim): 530 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)