>STRH_STRPN (P49610) Beta-N-acetylhexosaminidase precursor (EC 3.2.1.52)|
          Length = 1312

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 401 IGAAAVLVGFA--GINIPSDVLQPSRHEQEAPIVTIVDDSQHSPSDRNST 258
           +GAA+VL+GFA     + +D + P+  E +  I T+ D  Q S +    T
Sbjct: 16  VGAASVLIGFAFQAQTVAADGVTPTTTENQPTIHTVSDSPQSSENRTEET 65

>PEX1_PICPA (P46463) Peroxisome biosynthesis protein PAS1 (Peroxin-1)|
          Length = 1157

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 140 VVAWGKPDRTGLASPGIQCLVITLGQEPETSQTATMKQHP 259
           +V  G PDRTGL S  I+ L  ++ Q  +T   A    HP
Sbjct: 273 LVGPGTPDRTGLTSSKIKQLNDSIDQAAQTQTNAAGSSHP 312

>LPXD_CHLCV (Q823E0) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase|
           (EC 2.3.1.-)
          Length = 359

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -1

Query: 234 WLVSGSCPSVITKHCMPGLARPVRSGFP--HATTPQWKGWILSSA*QIVQPHAREGKIIC 61
           +LV    PS+  + C+     PV SGFP  H T              ++ P A  GK +C
Sbjct: 79  FLVVSEFPSIAFQKCIELFIPPVESGFPGIHPTA-------------VIHPTAHIGKDVC 125

Query: 60  IISVGVL 40
           I    V+
Sbjct: 126 IEPYAVI 132

>BTF3_MOUSE (Q64152) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 204

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = -2

Query: 467 IQVPIAALVDTLTGHA---------PGLLNYIGAAAVLVGFAGINIPSDVLQPSRHEQEA 315
           +Q  +AA   T+TGHA         P +LN +GA ++      +   ++ L     + +A
Sbjct: 121 VQASLAANTFTITGHAETKQLTEMLPSILNQLGADSL----TSLRRLAEALPKQSVDGKA 176

Query: 314 PIVTIVDDSQHSPSDRNSTDAVS 246
           P+ T  DD    P    + D  S
Sbjct: 177 PLATGEDDDDEVPDLVENFDEAS 199

>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556|
          Length = 348

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 253 ASVEFLSLGECCESSTMVTMGASCSC-REGCSTSDGMLMPA--KPTNTAAAP 399
           +S E  S G   +  +   + A CS  R GC T+ G L+PA   P ++A++P
Sbjct: 194 SSSETRSPGGTVQPKSPAPLAARCSASRAGCPTAAGSLLPAPRPPASSASSP 245

>MT_STENE (P55953) Metallothionein (MT)|
          Length = 64

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 262 EFLSLGECCESSTMV--TMGASCSCREGCSTSDG 357
           E  + GECC+  T       A+C C +GC    G
Sbjct: 21  ECCTTGECCKDGTCCGKCTNAACKCADGCKCGSG 54

>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 206

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = -2

Query: 467 IQVPIAALVDTLTGHA---------PGLLNYIGAAAVLVGFAGINIPSDVLQPSRHEQEA 315
           +Q  +AA   T+TGHA         P +LN +GA ++      +   ++ L     + +A
Sbjct: 123 VQASLAANTFTITGHAETKQLTEMLPSILNQLGADSL----TSLRRLAEALPKQSVDGKA 178

Query: 314 PIVTIVDDSQHSPSDRNSTDAVS 246
           P+ T  DD    P    + D  S
Sbjct: 179 PLATGEDDDDEVPDLVENFDEAS 201

>ATS8_MOUSE (P57110) ADAMTS-8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 8) (ADAM-TS
           8) (ADAM-TS8) (METH-2)
          Length = 905

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
 Frame = +1

Query: 208 TWTRT*NKPDS----YYETASV----EFLSLGECCESSTMVTMGASCSCREGCS 345
           +W R  NKP      +Y+TA +     F   GE C++  M  +G  C   + CS
Sbjct: 310 SWQRRFNKPSDRHPEHYDTAILFTRQNFCGKGEQCDTLGMADVGTICDPDKSCS 363

>ZYX_CHICK (Q04584) Zyxin|
          Length = 542

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
 Frame = -3

Query: 397 ELLLY*SVLLASTSHP-----MCYSLLGMSRKHPLLPLSMTRSIRPVIGILRMLFHSSCL 233
           EL L    L+    HP         L G  RK    PLS T+   P +  L  LFH  C 
Sbjct: 326 ELELLTQKLMKDMDHPPPVEAATSELCGFCRK----PLSRTQ---PAVRALDCLFHVECF 378

Query: 232 ACFRFLSKCNYQALY 188
            CF+   +   Q  Y
Sbjct: 379 TCFKCEKQLQGQQFY 393

>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29|
           (F-box/LRR-repeat protein 9) (F-box and leucine-rich
           repeat protein 9) (F-box protein FBL9)
          Length = 223

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 22/66 (33%), Positives = 33/66 (50%)
 Frame = +3

Query: 102 VTRMTISIPSIAVS*HGENLTEPAWRAQAYNAW*LHLDKNLKQARQLL*NSIRRIPITGR 281
           V R   S+  +A+S H   L++  W AQA ++W      NL    QL+  ++  I    R
Sbjct: 121 VARGCPSLEHLALS-HCSRLSDKGW-AQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACR 178

Query: 282 MLRVID 299
            LRV+D
Sbjct: 179 QLRVLD 184

>K0256_MOUSE (Q6A098) Protein KIAA0256|
          Length = 1086

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -2

Query: 236 SGLFQVLVQV*LPSIVCLGSPGRFGQVFPMLRH--RNGRDGYCHPRNKL 96
           S  FQ    V   S  C   P + GQ FP+  H  RNG  G   P+ +L
Sbjct: 131 SSTFQAANTVNAISTECTERPNQLGQAFPLSSHRSRNGNRGPVVPKPQL 179

>CH60_PHOLL (Q7MAZ7) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 548

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 422 APGLLNYIGAAAVLVGFAGINIPSDV-LQPSRHEQEAPIVTIVDDSQHSPS 273
           A G +  +  AA +VG  G N   +V ++ +    EAP+  IVD+S   PS
Sbjct: 413 AGGGVALVRVAAAIVGLKGDNEDQNVGIRVAMRAMEAPLRQIVDNSGEEPS 463

>MAM4_SCHPO (P87014) Protein-S-isoprenylcysteine O-methyltransferase (EC|
           2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase)
           (Prenylcysteine carboxyl methyltransferase) (pcCMT)
           (Prenylated protein carboxyl methyltransferase) (PPMT)
          Length = 236

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 238 SYYETASVEFLSLGECCESSTMVTMGASCS 327
           S Y+T+++ FL LG+   SS MV  G S S
Sbjct: 115 SVYQTSALGFLCLGQYLRSSAMVQAGQSFS 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,252,103
Number of Sequences: 219361
Number of extensions: 1747981
Number of successful extensions: 4604
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4597
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)