ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdl23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
2dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
4emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on ch... 46 0.11
5emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on ch... 44 0.42
6gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cl... 42 1.6
7gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome... 42 1.6
8emb|Y10196.1|HSPEX Homo sapiens PHEX gene 42 1.6
9gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Canc... 42 1.6
10gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-... 42 1.6
11gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, comple... 40 6.5
12gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, comple... 40 6.5
13emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chro... 40 6.5
14emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chr... 40 6.5
15emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chr... 40 6.5
16emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chro... 40 6.5
17gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, co... 40 6.5
18emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686... 40 6.5
19emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chr... 40 6.5
20emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on ch... 40 6.5
21gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Can... 40 6.5
22emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in... 40 6.5
23gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome... 40 6.5
24gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, comple... 40 6.5
25emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 ... 40 6.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                            
Query: 358      atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417
                ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 28046135 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 28046076

                                                                           
Query: 418      ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476
                ||||||||||| || || || ||||||| |||||| || ||||||||||| || |||||
Sbjct: 28046075 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 28046017



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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0547F09
          Length = 140615

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                         
Query: 358   atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417
             ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 90954 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 90895

                                                                        
Query: 418   ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476
             ||||||||||| || || || ||||||| |||||| || ||||||||||| || |||||
Sbjct: 90894 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 90836



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>dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full
            insert sequence
          Length = 1973

 Score =  109 bits (55), Expect = 8e-21
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                        
Query: 358  atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417
            ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 1520 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 1461

                                                                       
Query: 418  ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476
            ||||||||||| || || || ||||||| |||||| || ||||||||||| || |||||
Sbjct: 1460 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 1402



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>emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on chromosome 13, complete
             sequence
          Length = 61510

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 303   ggtaacaatgggtgcttcctgct 325
             |||||||||||||||||||||||
Sbjct: 49840 ggtaacaatgggtgcttcctgct 49862



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>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part
              of a novel gene and the 5' end of a novel gene, complete
              sequence
          Length = 170326

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 52     agaaattatacaaatgattttc 73
              ||||||||||||||||||||||
Sbjct: 149349 agaaattatacaaatgattttc 149370



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>gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cluster, complete
             sequence
          Length = 45000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   aatatccatcccttccattgc 136
             |||||||||||||||||||||
Sbjct: 18385 aatatccatcccttccattgc 18405



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>gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome 6, complete sequence
          Length = 190224

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaaatttagctacacaacaca 46
             |||||||||||||||||||||
Sbjct: 53376 aaaatttagctacacaacaca 53396



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>emb|Y10196.1|HSPEX Homo sapiens PHEX gene
          Length = 242825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 52    agaaattatacaaatgattttcccttccc 80
             |||||||||| |||| |||||||||||||
Sbjct: 27053 agaaattataaaaatcattttcccttccc 27081



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>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 354   tgggatgttgatgccagcaaa 374
             |||||||||||||||||||||
Sbjct: 39340 tgggatgttgatgccagcaaa 39360



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>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence
          Length = 38476

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 52    agaaattatacaaatgattttcccttccc 80
             |||||||||| |||| |||||||||||||
Sbjct: 36694 agaaattataaaaatcattttcccttccc 36722



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>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence
          Length = 200136

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  caagggcagcgataggaact 462
            ||||||||||||||||||||
Sbjct: 1106 caagggcagcgataggaact 1125



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>gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, complete sequence
          Length = 203519

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     aaattatacaaatgattttc 73
              ||||||||||||||||||||
Sbjct: 123572 aaattatacaaatgattttc 123591



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>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the
             5' end of the GPR64 gene for G protein-coupled receptor 64
             and a CpG island, complete sequence
          Length = 191318

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    aattatacaaatgattttcc 74
             ||||||||||||||||||||
Sbjct: 54687 aattatacaaatgattttcc 54706



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>emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chromosome 1 Contains an H+
              transporting ATPase lysosomal accessory protein 2 (ATP6AP2)
              pseudogene, the 5' end o the CRB1 gene for crumbs homolog 1
              (Drosophila) and a mitochondrial ribosomal protein S21
              (MRPS21) pseudogene, complete sequence
          Length = 212888

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     aaaatttagctacacaacac 45
              ||||||||||||||||||||
Sbjct: 115903 aaaatttagctacacaacac 115884



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>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1
             Contains 2 novel genes, complete sequence
          Length = 118873

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   aaaaccgactaatacagcag 391
             ||||||||||||||||||||
Sbjct: 49203 aaaaccgactaatacagcag 49184



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>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part
             of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), a 40S ribosomal protein S12 (RPS12)
             pseudogene and a 60S ribosomal protein L37 (RPL37)
             pseudogene, complete sequence
          Length = 176405

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   gatgttgatgccagcaaaac 376
             ||||||||||||||||||||
Sbjct: 69935 gatgttgatgccagcaaaac 69916



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>gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, complete sequence
          Length = 179812

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   aagggcagcgataggaactt 463
             ||||||||||||||||||||
Sbjct: 35651 aagggcagcgataggaactt 35632



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>emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686C0388 (from clone
            DKFZp686C0388)
          Length = 6578

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   aattatacaaatgattttcc 74
            ||||||||||||||||||||
Sbjct: 1757 aattatacaaatgattttcc 1776



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>emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chromosome 4 Contains a
              ribosomal protein S2 (Rps2) pseudogene, complete sequence
          Length = 198964

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    atggtaacaatgggtgcttc 320
              ||||||||||||||||||||
Sbjct: 183012 atggtaacaatgggtgcttc 183031



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>emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on chromosome X, complete
              sequence
          Length = 215381

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    aatggtaacaatgggtgctt 319
              ||||||||||||||||||||
Sbjct: 204901 aatggtaacaatgggtgctt 204920



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>gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 105375

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    attatacaaatgattttccc 75
             ||||||||||||||||||||
Sbjct: 24371 attatacaaatgattttccc 24390



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>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20,
              complete sequence
          Length = 166824

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    ccgggagcatgaccagtgag 434
              ||||||||||||||||||||
Sbjct: 115610 ccgggagcatgaccagtgag 115629



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>gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome 8, complete sequence
          Length = 228121

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     aaattatacaaatgattttc 73
              ||||||||||||||||||||
Sbjct: 203375 aaattatacaaatgattttc 203394



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>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence
          Length = 182904

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 443    caagggcagcgataggaact 462
              ||||||||||||||||||||
Sbjct: 137340 caagggcagcgataggaact 137359



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>emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 on chromosome 11, complete
            sequence
          Length = 37136

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  aagggcagcgataggaactt 463
            ||||||||||||||||||||
Sbjct: 2063 aagggcagcgataggaactt 2044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,625,310
Number of Sequences: 3902068
Number of extensions: 3625310
Number of successful extensions: 65112
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65060
Number of HSP's gapped (non-prelim): 52
length of query: 480
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 458
effective length of database: 17,147,199,772
effective search space: 7853417495576
effective search space used: 7853417495576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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