Clone Name | rbasdl23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 109 bits (55), Expect = 8e-21 Identities = 103/119 (86%) Strand = Plus / Minus Query: 358 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 28046135 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 28046076 Query: 418 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 28046075 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 28046017
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 109 bits (55), Expect = 8e-21 Identities = 103/119 (86%) Strand = Plus / Minus Query: 358 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 90954 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 90895 Query: 418 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 90894 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 90836
>dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full insert sequence Length = 1973 Score = 109 bits (55), Expect = 8e-21 Identities = 103/119 (86%) Strand = Plus / Minus Query: 358 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 417 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 1520 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 1461 Query: 418 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagacc 476 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 1460 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacc 1402
>emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on chromosome 13, complete sequence Length = 61510 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 303 ggtaacaatgggtgcttcctgct 325 ||||||||||||||||||||||| Sbjct: 49840 ggtaacaatgggtgcttcctgct 49862
>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part of a novel gene and the 5' end of a novel gene, complete sequence Length = 170326 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 agaaattatacaaatgattttc 73 |||||||||||||||||||||| Sbjct: 149349 agaaattatacaaatgattttc 149370
>gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cluster, complete sequence Length = 45000 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 aatatccatcccttccattgc 136 ||||||||||||||||||||| Sbjct: 18385 aatatccatcccttccattgc 18405
>gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome 6, complete sequence Length = 190224 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 aaaatttagctacacaacaca 46 ||||||||||||||||||||| Sbjct: 53376 aaaatttagctacacaacaca 53396
>emb|Y10196.1|HSPEX Homo sapiens PHEX gene Length = 242825 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 agaaattatacaaatgattttcccttccc 80 |||||||||| |||| ||||||||||||| Sbjct: 27053 agaaattataaaaatcattttcccttccc 27081
>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70009 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 tgggatgttgatgccagcaaa 374 ||||||||||||||||||||| Sbjct: 39340 tgggatgttgatgccagcaaa 39360
>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence Length = 38476 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 52 agaaattatacaaatgattttcccttccc 80 |||||||||| |||| ||||||||||||| Sbjct: 36694 agaaattataaaaatcattttcccttccc 36722
>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence Length = 200136 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 caagggcagcgataggaact 462 |||||||||||||||||||| Sbjct: 1106 caagggcagcgataggaact 1125
>gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, complete sequence Length = 203519 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaattatacaaatgattttc 73 |||||||||||||||||||| Sbjct: 123572 aaattatacaaatgattttc 123591
>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5' end of the GPR64 gene for G protein-coupled receptor 64 and a CpG island, complete sequence Length = 191318 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aattatacaaatgattttcc 74 |||||||||||||||||||| Sbjct: 54687 aattatacaaatgattttcc 54706
>emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chromosome 1 Contains an H+ transporting ATPase lysosomal accessory protein 2 (ATP6AP2) pseudogene, the 5' end o the CRB1 gene for crumbs homolog 1 (Drosophila) and a mitochondrial ribosomal protein S21 (MRPS21) pseudogene, complete sequence Length = 212888 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 aaaatttagctacacaacac 45 |||||||||||||||||||| Sbjct: 115903 aaaatttagctacacaacac 115884
>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1 Contains 2 novel genes, complete sequence Length = 118873 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 aaaaccgactaatacagcag 391 |||||||||||||||||||| Sbjct: 49203 aaaaccgactaatacagcag 49184
>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), a 40S ribosomal protein S12 (RPS12) pseudogene and a 60S ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 176405 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gatgttgatgccagcaaaac 376 |||||||||||||||||||| Sbjct: 69935 gatgttgatgccagcaaaac 69916
>gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, complete sequence Length = 179812 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 aagggcagcgataggaactt 463 |||||||||||||||||||| Sbjct: 35651 aagggcagcgataggaactt 35632
>emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686C0388 (from clone DKFZp686C0388) Length = 6578 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aattatacaaatgattttcc 74 |||||||||||||||||||| Sbjct: 1757 aattatacaaatgattttcc 1776
>emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chromosome 4 Contains a ribosomal protein S2 (Rps2) pseudogene, complete sequence Length = 198964 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 atggtaacaatgggtgcttc 320 |||||||||||||||||||| Sbjct: 183012 atggtaacaatgggtgcttc 183031
>emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on chromosome X, complete sequence Length = 215381 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 aatggtaacaatgggtgctt 319 |||||||||||||||||||| Sbjct: 204901 aatggtaacaatgggtgctt 204920
>gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105375 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 attatacaaatgattttccc 75 |||||||||||||||||||| Sbjct: 24371 attatacaaatgattttccc 24390
>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20, complete sequence Length = 166824 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ccgggagcatgaccagtgag 434 |||||||||||||||||||| Sbjct: 115610 ccgggagcatgaccagtgag 115629
>gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome 8, complete sequence Length = 228121 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaattatacaaatgattttc 73 |||||||||||||||||||| Sbjct: 203375 aaattatacaaatgattttc 203394
>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence Length = 182904 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 caagggcagcgataggaact 462 |||||||||||||||||||| Sbjct: 137340 caagggcagcgataggaact 137359
>emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 on chromosome 11, complete sequence Length = 37136 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 aagggcagcgataggaactt 463 |||||||||||||||||||| Sbjct: 2063 aagggcagcgataggaactt 2044 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,625,310 Number of Sequences: 3902068 Number of extensions: 3625310 Number of successful extensions: 65112 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65060 Number of HSP's gapped (non-prelim): 52 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)