Clone Name | rbasdl21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_476027.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1425 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 1360 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 1301 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 1300 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 1246 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 1187 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 1128 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 1127 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 1069 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 1068 gcgccacaagtagagcagatcggcgtcgcgctgattcac 1030
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 6913 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 6972 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 6973 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 7027 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Plus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 7086 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 7145 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 7146 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 7204 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 7205 gcgccacaagtagagcagatcggcgtcgcgctgattcac 7243
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 137545 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 137604 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 137605 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 137659 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Plus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 137718 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 137777 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 137778 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 137836 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 137837 gcgccacaagtagagcagatcggcgtcgcgctgattcac 137875
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 34377 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 34318 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 34317 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 34263 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 34204 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 34145 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 34144 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 34086 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 34085 gcgccacaagtagagcagatcggcgtcgcgctgattcac 34047
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 29358888 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 29358947 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 29358948 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 29359002 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Plus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 29359061 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 29359120 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 29359121 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 29359179 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 29359180 gcgccacaagtagagcagatcggcgtcgcgctgattcac 29359218
>dbj|AK058553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C11, full insert sequence Length = 1522 Score = 77.8 bits (39), Expect = 4e-11 Identities = 96/115 (83%) Strand = Plus / Minus Query: 243 ggacgccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcgtca 302 ||||||||||||||||||||||||| | || ||||||||||| ||||||||||| || Sbjct: 1360 ggacgccggcgttgcagatgttggcgaaggagcgcatgtgctttatcccgtactgtccca 1301 Query: 303 gcgggccgcaccgctcctcgaacctccgcaccacagacttgaggcagccccagtc 357 ||| || ||| | ||||||||| ||||||||| ||| ||||||| ||||||| Sbjct: 1300 gcgacccacactgatcctcgaacgtccgcaccatcgacctgaggcactcccagtc 1246 Score = 61.9 bits (31), Expect = 2e-06 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand = Plus / Minus Query: 425 aggaggccgccgatcagctccacgctgctgtccacgcgagaccgccgcgccatcgtctcc 484 |||||||| ||||||| ||||||||| ||||||||||| || ||||| ||||| || | Sbjct: 1187 aggaggcccccgatcatctccacgcttctgtccacgcgcgatcgccgtcccatctcctgc 1128 Query: 485 accagccgcctccgtgcctcgactttctcggccgacccttccgccgac-ctccggtactt 543 || |||||| ||| ||||| || ||||| |||| ||| | ||||| | ||||||||||| Sbjct: 1127 acaagccgctcccgagcctccaccttctctgccgtcccct-cgccggctctccggtactt 1069 Query: 544 gtgccagaagtggacgaggtcggcgtcccgctggttcac 582 | |||| |||| || || |||||||| ||||| ||||| Sbjct: 1068 gcgccacaagtagagcagatcggcgtcgcgctgattcac 1030
>emb|AJ131719.1|ZMA131719 Zea mays mRNA for legumain-like protease (see2a) Length = 1864 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 251 gcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcg 299 |||||||||||||| || | |||||||||||||||||||| ||||||| Sbjct: 1390 gcgttgcagatgtttgcgaaggaccgcatgtgcttcatcccatactgcg 1342
>gb|AY104034.1| Zea mays PCO131778 mRNA sequence Length = 1981 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 251 gcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcg 299 |||||||||||||| || | |||||||||||||||||||| ||||||| Sbjct: 1428 gcgttgcagatgtttgcgaaggaccgcatgtgcttcatcccatactgcg 1380
>gb|AF082347.1|AF082347 Zea mays C13 endopeptidase NP1 precursor, mRNA, complete cds Length = 1919 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 251 gcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactgcg 299 |||||||||||||| || | |||||||||||||||||||| ||||||| Sbjct: 1425 gcgttgcagatgtttgcgaaggaccgcatgtgcttcatcccatactgcg 1377
>ref|NM_185324.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1359 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 279 tgtgcttcatcccgtactgcgtcagcgggccgcaccgctcctcgaacctccgcaccacag 338 ||||||||||||| |||||| ||||||||| || | |||||||| | ||||||| | Sbjct: 1258 tgtgcttcatcccatactgccccagcgggccacagtgagcctcgaacgtgcgcaccatgg 1199 Query: 339 acttgaggcagccccagtcatccaccacaggctgccctgccgg 381 |||||||||| ||||||| || |||| |||||||| ||||| Sbjct: 1198 acttgaggcaatcccagtcgtcaaccagcggctgccccgccgg 1156
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 279 tgtgcttcatcccgtactgcgtcagcgggccgcaccgctcctcgaacctccgcaccacag 338 ||||||||||||| |||||| ||||||||| || | |||||||| | ||||||| | Sbjct: 360481 tgtgcttcatcccatactgccccagcgggccacagtgagcctcgaacgtgcgcaccatgg 360422 Query: 339 acttgaggcagccccagtcatccaccacaggctgccctgccgg 381 |||||||||| ||||||| || |||| |||||||| ||||| Sbjct: 360421 acttgaggcaatcccagtcgtcaaccagcggctgccccgccgg 360379 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 ctcctcccggacgccggcgttgcag 259 ||||||||||||||||||| ||||| Sbjct: 19314609 ctcctcccggacgccggcgatgcag 19314585
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644B06 Length = 194509 Score = 54.0 bits (27), Expect = 6e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 279 tgtgcttcatcccgtactgcgtcagcgggccgcaccgctcctcgaacctccgcaccacag 338 ||||||||||||| |||||| ||||||||| || | |||||||| | ||||||| | Sbjct: 70434 tgtgcttcatcccatactgccccagcgggccacagtgagcctcgaacgtgcgcaccatgg 70375 Query: 339 acttgaggcagccccagtcatccaccacaggctgccctgccgg 381 |||||||||| ||||||| || |||| |||||||| ||||| Sbjct: 70374 acttgaggcaatcccagtcgtcaaccagcggctgccccgccgg 70332
>gb|AF260827.1|AF260827 Ipomoea batatas cysteine protease mRNA, complete cds Length = 1572 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 248 ccggcgttgcagatgttggctagcgaccgcatgtgcttcatcccgtactg 297 ||||| |||||||||||||| | || |||||||| |||||||||||||| Sbjct: 1412 ccggcattgcagatgttggcaatggagcgcatgtgtttcatcccgtactg 1363
>emb|AJ843978.1| Plantago major partial mRNA for endopeptidase 1 (enp1 gene) Length = 783 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 275 cgcatgtgcttcatcccgtactg 297 ||||||||||||||||||||||| Sbjct: 375 cgcatgtgcttcatcccgtactg 353
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 414 ccgagccgaacaggaggccgcc 435 |||||||||||||||||||||| Sbjct: 1518116 ccgagccgaacaggaggccgcc 1518137
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 atatatttacagcaattacatacttg 71 ||||||||||||||| |||||||||| Sbjct: 5585379 atatatttacagcaagtacatacttg 5585354
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 117585 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 46 atatatttacagcaattacatacttg 71 ||||||||||||||| |||||||||| Sbjct: 12756 atatatttacagcaagtacatacttg 12781
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 atatatttacagcaattacatacttg 71 ||||||||||||||| |||||||||| Sbjct: 5585368 atatatttacagcaagtacatacttg 5585343
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160556 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 atatatttacagcaattacatacttg 71 ||||||||||||||| |||||||||| Sbjct: 138184 atatatttacagcaagtacatacttg 138159
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 46 atatatttacagcaattacatacttg 71 ||||||||||||||| |||||||||| Sbjct: 67506 atatatttacagcaagtacatacttg 67531
>gb|AC092000.3| Homo sapiens BAC clone RP11-346I7 from 7, complete sequence Length = 157101 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 366 caggctgccctgccggccgcacggt 390 |||||||||||||| |||||||||| Sbjct: 44381 caggctgccctgcctgccgcacggt 44405
>ref|XM_728198.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000510.00.0) partial mRNA Length = 465 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 agcaataaaagcatatattta 54 ||||||||||||||||||||| Sbjct: 196 agcaataaaagcatatattta 176
>dbj|AB224691.1| Aspergillus oryzae cDNA, contig sequence: AoEST1540 Length = 939 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 176 cagatgatcaaggatgaaggactag 200 |||||||||||||||||||| |||| Sbjct: 598 cagatgatcaaggatgaagggctag 622
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cagatgatcaaggatgaaggactag 200 |||||||||||||||||||| |||| Sbjct: 1942582 cagatgatcaaggatgaagggctag 1942558
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 ctcctcccggacgccggcgttgcag 259 ||||||||||||||||||| ||||| Sbjct: 19382 ctcctcccggacgccggcgatgcag 19358
>emb|AJ251454.1|ZMA251454 Zea mays see2b gene for putative legumain, exons 1-9 Length = 8994 Score = 42.1 bits (21), Expect = 2.3 Identities = 36/41 (87%) Strand = Plus / Minus Query: 251 gcgttgcagatgttggctagcgaccgcatgtgcttcatccc 291 |||||||||||||| | | |||||||||||||||||||| Sbjct: 5356 gcgttgcagatgtttgggaaggaccgcatgtgcttcatccc 5316
>emb|AJ251453.1|ZMA251453 Zea mays see2a gene for putative legumain, exons 1-9 Length = 6914 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 cgcatgtgcttcatcccgtactgcg 299 ||||||||||||||||| ||||||| Sbjct: 6748 cgcatgtgcttcatcccatactgcg 6724
>emb|AJ131718.1|ZMA131718 Zea mays mRNA for legumain-like protease (see2a) Length = 1569 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 cgcatgtgcttcatcccgtactgcg 299 ||||||||||||||||| ||||||| Sbjct: 1380 cgcatgtgcttcatcccatactgcg 1356
>gb|AF082346.1|AF082346 Hordeum vulgare C13 endopeptidase NP1 precursor, mRNA, partial cds Length = 1485 Score = 42.1 bits (21), Expect = 2.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 253 gttgcagatgttggctagcgaccgcatgtgcttcatcccgtactg 297 |||||||||||| || | || || |||||||||||| |||||||| Sbjct: 1135 gttgcagatgtttgcgaacgccctcatgtgcttcatgccgtactg 1091
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 cgaacaggaggccgccgatca 440 ||||||||||||||||||||| Sbjct: 4139249 cgaacaggaggccgccgatca 4139229
>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence Length = 184603 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tatagcaataaaagcatatattta 54 ||||||| |||||||||||||||| Sbjct: 118768 tatagcattaaaagcatatattta 118745
>ref|XM_467011.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1889 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1576 catgtgcttcataccgtactgagtgagcggtccgca 1541
>ref|XM_467012.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1774 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1460 catgtgcttcataccgtactgagtgagcggtccgca 1425
>ref|XM_450100.1| Oryza sativa (japonica cultivar-group), mRNA Length = 300 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 agaagtggacgaggtcggcg 568 |||||||||||||||||||| Sbjct: 99 agaagtggacgaggtcggcg 118
>gb|AC186002.3| Pan troglodytes BAC clone CH251-86D23 from chromosome 9, complete sequence Length = 162651 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 103535 aataaaagcatatatttaca 103554
>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence Length = 167741 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tatagcaataaaagcatatattta 54 ||||||| |||||||||||||||| Sbjct: 46248 tatagcattaaaagcatatattta 46225
>gb|AC122058.4| Mus musculus BAC clone RP24-468G7 from chromosome 14, complete sequence Length = 143331 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 aggaggaggagctctggacg 625 |||||||||||||||||||| Sbjct: 73216 aggaggaggagctctggacg 73197
>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence Length = 181261 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 593 ggcagctgcctcgaggaggaggag 616 ||||||||||| |||||||||||| Sbjct: 59892 ggcagctgcctggaggaggaggag 59869
>gb|AC122299.5| Mus musculus BAC clone RP23-270L23 from chromosome 5, complete sequence Length = 209091 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 593 ggcagctgcctcgaggaggaggag 616 ||||||||||| |||||||||||| Sbjct: 91897 ggcagctgcctggaggaggaggag 91920
>ref|XM_537015.2| PREDICTED: Canis familiaris similar to CG4338-PA (LOC479890), mRNA Length = 1199 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 594 gcagctgcctcgaggaggaggagc 617 ||||||||| |||||||||||||| Sbjct: 862 gcagctgccccgaggaggaggagc 885
>emb|AL772307.15| Human DNA sequence from clone RP11-416B15 on chromosome 9 Contains a pseudogene similar to part of ribosomal protein L7a (RPL7A) and a CpG island, complete sequence Length = 161380 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 120272 aataaaagcatatatttaca 120253
>emb|AL773545.13| Human DNA sequence from clone RP11-216M21 on chromosome 9 Contains three novel pseudogenes, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A), a pseudogene similar to part of G protein-coupled receptor 116 (GPR116), two novel genes, the 5' end of a novel gene similar to ankyrin repeat domain 20A (ANKRD20A) and three CpG islands, complete sequence Length = 165886 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 16474 aataaaagcatatatttaca 16455
>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a novel gene, two novel pseudogenes, a pseudogene similar to part of myosin V family protein, a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a pseudogene similar to part of prostaglandin E receptor 4 (subtype EP4) (PTGER4) and a CpG island, complete sequence Length = 163569 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 93812 aataaaagcatatatttaca 93831
>emb|AL591438.6| Human DNA sequence from clone RP11-452D2 on chromosome 9 Contains a pseudogene similar to part of ribosomal protein L7a (RPL7A), a novel pseudogene and a CpG island, complete sequence Length = 176097 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 35387 aataaaagcatatatttaca 35406
>emb|AL591479.3| Human DNA sequence from clone RP11-154P18 on chromosome 9 Contains two novel pseudogene, a CDRT15 protein pseudogene, a pseudogene similar to part of meprin A, alpha (PABA peptide hydrolase) (MEP1A) and two CpG islands, complete sequence Length = 178933 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 69045 aataaaagcatatatttaca 69026
>emb|AL354718.10| Human DNA sequence from clone RP11-187C18 on chromosome 9 Contains a pseudogene similar to part of ribosomal protein L7a (RPL7A), three novel genes, three novel pseudogene and two CpG islands, complete sequence Length = 175271 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 103241 aataaaagcatatatttaca 103222
>emb|AL023713.1|HS324L9 Human DNA sequence from clone RP3-324L9 on chromosome 6p22.3-23, complete sequence Length = 73427 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttttctttatatagcaataa 41 |||||||||||||||||||| Sbjct: 54236 ttttctttatatagcaataa 54217
>gb|AC183610.3| Pan troglodytes BAC clone CH251-223D9 from chromosome 9, complete sequence Length = 159456 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 116210 aataaaagcatatatttaca 116229
>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a tumor suppressor deleted in oral cancer-related 1 (DOC-1R) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 163556 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 93827 aataaaagcatatatttaca 93846
>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 aggaggaggagctctggacg 625 |||||||||||||||||||| Sbjct: 308134 aggaggaggagctctggacg 308115
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 agccgaacaggaggccgccgatca 440 |||||||||||||| ||||||||| Sbjct: 3302179 agccgaacaggagggcgccgatca 3302202
>gb|AY062178.1| Oryza sativa subsp. indica C13 cysteine proteinase precursor (NP1) mRNA, complete cds Length = 1642 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1317 catgtgcttcataccgtactgagtgagcggtccgca 1282
>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete sequence Length = 278310 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 78818 aataaaagcatatatttaca 78799
>gb|AC008078.11| Homo sapiens chromosome 15 clone b2176l16 map 15q21, complete sequence Length = 78467 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 82 tgtactgtagtatttacagcaatc 105 |||||| ||||||||||||||||| Sbjct: 62853 tgtactttagtatttacagcaatc 62876
>emb|BX511233.10| Zebrafish DNA sequence from clone CH211-152P11 in linkage group 19, complete sequence Length = 193921 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tacatacttgctgtgcagca 81 |||||||||||||||||||| Sbjct: 37301 tacatacttgctgtgcagca 37320
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 agaagtggacgaggtcggcg 568 |||||||||||||||||||| Sbjct: 1687556 agaagtggacgaggtcggcg 1687575
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 25909252 catgtgcttcataccgtactgagtgagcggtccgca 25909287
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 agaagtggacgaggtcggcg 568 |||||||||||||||||||| Sbjct: 74128 agaagtggacgaggtcggcg 74147
>emb|AL355000.11| Human DNA sequence from clone RP11-78N10 on chromosome 22, complete sequence Length = 219376 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 22354 aataaaagcatatatttaca 22335
>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1282_H11 Length = 143314 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 60593 catgtgcttcataccgtactgagtgagcggtccgca 60628
>emb|Z47793.1|CSCYSPRNS C.sinensis mRNA for putative cystein proteinase Length = 1839 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 ttgaggcagccccagtcatc 360 |||||||||||||||||||| Sbjct: 1313 ttgaggcagccccagtcatc 1294
>dbj|AK101360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035H01, full insert sequence Length = 1888 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1575 catgtgcttcataccgtactgagtgagcggtccgca 1540
>dbj|AK070079.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043E22, full insert sequence Length = 1774 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1460 catgtgcttcataccgtactgagtgagcggtccgca 1425
>gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, complete sequence Length = 207254 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 aggaggaggagctctggacg 625 |||||||||||||||||||| Sbjct: 8642 aggaggaggagctctggacg 8623
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete sequence Length = 176845 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aataaaagcatatatttaca 56 |||||||||||||||||||| Sbjct: 68781 aataaaagcatatatttaca 68762
>dbj|AB081465.1| Oryza sativa (japonica cultivar-group) gene for asparaginyl endopeptidase REP-2, complete cds Length = 4532 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 4252 catgtgcttcataccgtactgagtgagcggtccgca 4217
>dbj|AB081464.1| Oryza sativa (japonica cultivar-group) mRNA for asparaginyl endopeptidase REP-2, complete cds Length = 1682 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 277 catgtgcttcatcccgtactgcgtcagcgggccgca 312 |||||||||||| |||||||| || ||||| ||||| Sbjct: 1365 catgtgcttcataccgtactgagtgagcggtccgca 1330 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,857,691 Number of Sequences: 3902068 Number of extensions: 5857691 Number of successful extensions: 122123 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121433 Number of HSP's gapped (non-prelim): 680 length of query: 662 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 639 effective length of database: 17,143,297,704 effective search space: 10954567232856 effective search space used: 10954567232856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)