ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdl16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187453.1| Oryza sativa (japonica cultivar-group), predic... 432 e-118
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 432 e-118
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 432 e-118
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 432 e-118
5dbj|AK105267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
6gb|AY112421.1| Zea mays CL8980_1 mRNA sequence 311 1e-81
7ref|XM_550093.1| Oryza sativa (japonica cultivar-group), mRNA 80 1e-11
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
9dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
10dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
11dbj|AK072289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-11
12dbj|AK060202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-11
13ref|XM_476339.1| Oryza sativa (japonica cultivar-group), mRNA 78 4e-11
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
15dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
16dbj|AK066040.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
17dbj|AK061192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
18dbj|AP008222.1| Oryza sativa (japonica cultivar-group) genomic D... 78 4e-11
19gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete... 44 0.53
20ref|NM_078963.2| Drosophila melanogaster Rab-protein 3 CG7576-RA... 44 0.53
21gb|AY060449.1| Drosophila melanogaster LP05860 full length cDNA 44 0.53
22dbj|AB112932.1| Drosophila melanogaster rab3 mRNA for Rab3, comp... 44 0.53
23gb|AY109049.1| Zea mays PCO094720 mRNA sequence 44 0.53
24gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22... 44 0.53
25gb|M64621.1|DRORAB3 Drosophila rab3 protein, complete cds 44 0.53
26ref|XM_762506.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 2.1
27gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 8.3
28gb|AC132416.2| Mus musculus BAC clone RP23-251A5 from chromosome... 40 8.3
29ref|NM_010700.1| Mus musculus low density lipoprotein receptor (... 40 8.3
30gb|BC053041.1| Mus musculus low density lipoprotein receptor, mR... 40 8.3
31gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, compl... 40 8.3
32gb|AC161371.4| Mus musculus BAC clone RP23-402N3 from chromosome... 40 8.3
33gb|BC019207.1| Mus musculus low density lipoprotein receptor, mR... 40 8.3
34gb|AC102077.7| Mus musculus chromosome 7, clone RP23-423B21, com... 40 8.3
35emb|Z19521.1|MMLDLRMR M.musculus Ldlr mRNA encoding low density ... 40 8.3
36emb|X64414.1|MMLDLREC Mus musculus mRNA for low density lipoprot... 40 8.3
37gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome ... 40 8.3
38gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosom... 40 8.3
39dbj|AK135100.1| Mus musculus adult male olfactory brain cDNA, RI... 40 8.3
40gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complet... 40 8.3
41dbj|AK149950.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 8.3
42dbj|AK151968.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 8.3
43dbj|AK152103.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 8.3
44dbj|AK160006.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 40 8.3
45dbj|AK166466.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cD... 40 8.3
46gb|AF425607.1|AF425607 Mus musculus low density lipoprotein rece... 40 8.3
47dbj|AK170264.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 8.3
48dbj|AK046714.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 8.3
49dbj|AK037670.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 8.3
50gb|L29568.1|AH005854S3 Bacteriophage LL-H main tail protein gp1... 40 8.3
51gb|AC098808.3| Papio anubis clone RP41-17K4, complete sequence 40 8.3
52gb|AC012527.7| Homo sapiens chromosome 15, clone RP11-44J20, com... 40 8.3
53gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, co... 40 8.3
54ref|XM_310533.2| Anopheles gambiae str. PEST ENSANGP00000017306 ... 40 8.3
55gb|AC006367.3|AC006367 Homo sapiens BAC clone RP11-167L9 from 7p... 40 8.3
56emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22... 40 8.3
57emb|CR974451.9| Mouse DNA sequence from clone RP24-180B11 on chr... 40 8.3
58gb|AY826432.1| Mus musculus mediator of DNA damage checkpoint 1 ... 40 8.3 
>ref|NM_187453.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1248

 Score =  432 bits (218), Expect = e-118
 Identities = 356/403 (88%)
 Strand = Plus / Minus

                                                                        
Query: 207  ccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgaggccgttctcca 266
            |||||||||||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1221 ccagtacaacgttgcggtacagtagtgctcattgcgtattgtcttcgaggctgctctcca 1162

                                                                        
Query: 267  gtcgcagttctccatctcctccctggcagcccttccgacggactccctgaggttcttnga 326
            ||| || ||||||||||||||||| ||||||||||| | ||| || || ||   ||| ||
Sbjct: 1161 gtcacacttctccatctcctccctagcagcccttccaatggattctcttagaaccttcga 1102

                                                                        
Query: 327  cgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtgtgaagaggaa 386
            ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct: 1101 cgaaaggagctgttcgatcttcctcacacactcgtcgagatccccgggtgtaaacaagaa 1042

                                                                        
Query: 387  gctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagctgc 446
             ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1041 actggttttaccctccttgtccttgggtattatatcaggtatacctccagcacgagcagc 982

                                                                        
Query: 447  cacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagactc 506
             ||||| || |||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct: 981  gacaactgggactccagaagccatggactccagcactacttgaccaagtgtctcagattc 922

                                                                        
Query: 507  tgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttggag 566
            ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 921  tgaaggcattgcaaacaagtcgccactggcatatgcttgtgagagctcctcgccttggag 862

                                                       
Query: 567  cattccggtgaaaactgcangcatgcctgtgaacattttttcc 609
            |||||| ||||| |||||| ||||||| || |||||| |||||
Sbjct: 861  cattccagtgaatactgcaggcatgccagtaaacattctttcc 819
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  432 bits (218), Expect = e-118
 Identities = 356/403 (88%)
 Strand = Plus / Minus

                                                                           
Query: 207     ccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgaggccgttctcca 266
               |||||||||||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 8713182 ccagtacaacgttgcggtacagtagtgctcattgcgtattgtcttcgaggctgctctcca 8713123

                                                                           
Query: 267     gtcgcagttctccatctcctccctggcagcccttccgacggactccctgaggttcttnga 326
               ||| || ||||||||||||||||| ||||||||||| | ||| || || ||   ||| ||
Sbjct: 8713122 gtcacacttctccatctcctccctagcagcccttccaatggattctcttagaaccttcga 8713063

                                                                           
Query: 327     cgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtgtgaagaggaa 386
               ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct: 8713062 cgaaaggagctgttcgatcttcctcacacactcgtcgagatccccgggtgtaaacaagaa 8713003

                                                                           
Query: 387     gctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagctgc 446
                ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 8713002 actggttttaccctccttgtccttgggtattatatcaggtatacctccagcacgagcagc 8712943

                                                                           
Query: 447     cacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagactc 506
                ||||| || |||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct: 8712942 gacaactgggactccagaagccatggactccagcactacttgaccaagtgtctcagattc 8712883

                                                                           
Query: 507     tgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttggag 566
               ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 8712882 tgaaggcattgcaaacaagtcgccactggcatatgcttgtgagagctcctcgccttggag 8712823

                                                          
Query: 567     cattccggtgaaaactgcangcatgcctgtgaacattttttcc 609
               |||||| ||||| |||||| ||||||| || |||||| |||||
Sbjct: 8712822 cattccagtgaatactgcaggcatgccagtaaacattctttcc 8712780
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>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  432 bits (218), Expect = e-118
 Identities = 356/403 (88%)
 Strand = Plus / Minus

                                                                         
Query: 207   ccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgaggccgttctcca 266
             |||||||||||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 56833 ccagtacaacgttgcggtacagtagtgctcattgcgtattgtcttcgaggctgctctcca 56774

                                                                         
Query: 267   gtcgcagttctccatctcctccctggcagcccttccgacggactccctgaggttcttnga 326
             ||| || ||||||||||||||||| ||||||||||| | ||| || || ||   ||| ||
Sbjct: 56773 gtcacacttctccatctcctccctagcagcccttccaatggattctcttagaaccttcga 56714

                                                                         
Query: 327   cgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtgtgaagaggaa 386
             ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct: 56713 cgaaaggagctgttcgatcttcctcacacactcgtcgagatccccgggtgtaaacaagaa 56654

                                                                         
Query: 387   gctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagctgc 446
              ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 56653 actggttttaccctccttgtccttgggtattatatcaggtatacctccagcacgagcagc 56594

                                                                         
Query: 447   cacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagactc 506
              ||||| || |||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct: 56593 gacaactgggactccagaagccatggactccagcactacttgaccaagtgtctcagattc 56534

                                                                         
Query: 507   tgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttggag 566
             ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 56533 tgaaggcattgcaaacaagtcgccactggcatatgcttgtgagagctcctcgccttggag 56474

                                                        
Query: 567   cattccggtgaaaactgcangcatgcctgtgaacattttttcc 609
             |||||| ||||| |||||| ||||||| || |||||| |||||
Sbjct: 56473 cattccagtgaatactgcaggcatgccagtaaacattctttcc 56431
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  432 bits (218), Expect = e-118
 Identities = 356/403 (88%)
 Strand = Plus / Minus

                                                                           
Query: 207     ccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgaggccgttctcca 266
               |||||||||||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 8711017 ccagtacaacgttgcggtacagtagtgctcattgcgtattgtcttcgaggctgctctcca 8710958

                                                                           
Query: 267     gtcgcagttctccatctcctccctggcagcccttccgacggactccctgaggttcttnga 326
               ||| || ||||||||||||||||| ||||||||||| | ||| || || ||   ||| ||
Sbjct: 8710957 gtcacacttctccatctcctccctagcagcccttccaatggattctcttagaaccttcga 8710898

                                                                           
Query: 327     cgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtgtgaagaggaa 386
               ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct: 8710897 cgaaaggagctgttcgatcttcctcacacactcgtcgagatccccgggtgtaaacaagaa 8710838

                                                                           
Query: 387     gctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagctgc 446
                ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 8710837 actggttttaccctccttgtccttgggtattatatcaggtatacctccagcacgagcagc 8710778

                                                                           
Query: 447     cacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagactc 506
                ||||| || |||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct: 8710777 gacaactgggactccagaagccatggactccagcactacttgaccaagtgtctcagattc 8710718

                                                                           
Query: 507     tgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttggag 566
               ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 8710717 tgaaggcattgcaaacaagtcgccactggcatatgcttgtgagagctcctcgccttggag 8710658

                                                          
Query: 567     cattccggtgaaaactgcangcatgcctgtgaacattttttcc 609
               |||||| ||||| |||||| ||||||| || |||||| |||||
Sbjct: 8710657 cattccagtgaatactgcaggcatgccagtaaacattctttcc 8710615
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>dbj|AK105267.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D07, full
            insert sequence
          Length = 2031

 Score =  432 bits (218), Expect = e-118
 Identities = 356/403 (88%)
 Strand = Plus / Minus

                                                                        
Query: 207  ccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgaggccgttctcca 266
            |||||||||||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1761 ccagtacaacgttgcggtacagtagtgctcattgcgtattgtcttcgaggctgctctcca 1702

                                                                        
Query: 267  gtcgcagttctccatctcctccctggcagcccttccgacggactccctgaggttcttnga 326
            ||| || ||||||||||||||||| ||||||||||| | ||| || || ||   ||| ||
Sbjct: 1701 gtcacacttctccatctcctccctagcagcccttccaatggattctcttagaaccttcga 1642

                                                                        
Query: 327  cgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtgtgaagaggaa 386
            ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || | |||
Sbjct: 1641 cgaaaggagctgttcgatcttcctcacacactcgtcgagatccccgggtgtaaacaagaa 1582

                                                                        
Query: 387  gctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagctgc 446
             ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1581 actggttttaccctccttgtccttgggtattatatcaggtatacctccagcacgagcagc 1522

                                                                        
Query: 447  cacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagactc 506
             ||||| || |||||||||||||||||||||||||||||||| || || |||||||| ||
Sbjct: 1521 gacaactgggactccagaagccatggactccagcactacttgaccaagtgtctcagattc 1462

                                                                        
Query: 507  tgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttggag 566
            ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1461 tgaaggcattgcaaacaagtcgccactggcatatgcttgtgagagctcctcgccttggag 1402

                                                       
Query: 567  cattccggtgaaaactgcangcatgcctgtgaacattttttcc 609
            |||||| ||||| |||||| ||||||| || |||||| |||||
Sbjct: 1401 cattccagtgaatactgcaggcatgccagtaaacattctttcc 1359
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>gb|AY112421.1| Zea mays CL8980_1 mRNA sequence
          Length = 736

 Score =  311 bits (157), Expect = 1e-81
 Identities = 323/379 (85%)
 Strand = Plus / Plus

                                                                       
Query: 197 tcttcttctgccagtacaacgtcgcggtgcggtagtgctcgttgcgtatcgtcttcgagg 256
           |||||||| |||||||| |  |||| | || |||| |||| ||||| ||  |||||||||
Sbjct: 229 tcttcttccgccagtacgatatcgcagggctgtagggctcattgcggattttcttcgagg 288

                                                                       
Query: 257 ccgttctccagtcgcagttctccatctcctccctggcagcccttccgacggactccctga 316
           | | ||||||||| || ||||||||||| |||||||||||| |||| ||||  |||||||
Sbjct: 289 ctgctctccagtcacacttctccatctcttccctggcagcctttccaacggtttccctga 348

                                                                       
Query: 317 ggttcttngacgagaggagctgttcgatcttnctcacgcactcgtcgagatccccgggtg 376
           | | ||| ||   |||||  || || ||||| ||||||||||| |||||||| || ||||
Sbjct: 349 gatcctttgaactgaggacttgctctatcttcctcacgcactcatcgagatctcccggtg 408

                                                                       
Query: 377 tgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccag 436
           | || || ||||| || || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 409 taaacagaaagcttgttttaccctccttgtccttgggtattatatcaggtatccctccag 468

                                                                       
Query: 437 cacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgaggg 496
           ||||||| || || || || |||||||||||||||||||||||||||||||| |||||||
Sbjct: 469 cacgagcagcgacgactgggactccagaagccatggactccagcactacttgcccgaggg 528

                                                                       
Query: 497 tctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcct 556
           |||| || ||||||||||||||||| || ||| ||||||| |||||||| ||||||||||
Sbjct: 529 tctcggattctgaaggcattgcaaatacatccgcactggcgtacgcttgtgagagctcct 588

                              
Query: 557 cgccttggagcattccggt 575
           | |||||||||||||||||
Sbjct: 589 caccttggagcattccggt 607



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                    
Query: 56  ggacatatgagtgcagctagccatac-aagctcgcaagctg 95
           |||||||||| |||||||||||| || || |||||||||||
Sbjct: 86  ggacatatgaatgcagctagccacacaaaactcgcaagctg 126
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>ref|XM_550093.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1605

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                        
Query: 376  gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
            ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 1164 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 1105

                                                                        
Query: 436  gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
            ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 1104 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 1045

                                                                        
Query: 496  gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
            || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 1044 gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 985

                                               
Query: 556  tcgccttggagcattccggtgaaaactgcangcat 590
            |||||||| | |||||| ||||| || ||| ||||
Sbjct: 984  tcgccttgcatcattccagtgaacacggcaggcat 950



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 234  ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
            ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 1306 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 1256
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                           
Query: 376     gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
               ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 2277316 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 2277257

                                                                           
Query: 436     gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
               ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 2277256 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 2277197

                                                                           
Query: 496     gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
               || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 2277196 gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 2277137

                                                  
Query: 556     tcgccttggagcattccggtgaaaactgcangcat 590
               |||||||| | |||||| ||||| || ||| ||||
Sbjct: 2277136 tcgccttgcatcattccagtgaacacggcaggcat 2277102



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                  
Query: 234     ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
               ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 2277458 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 2277408
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0024G09
          Length = 175565

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                        
Query: 376  gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
            ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 6366 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 6307

                                                                        
Query: 436  gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
            ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 6306 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 6247

                                                                        
Query: 496  gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
            || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 6246 gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 6187

                                               
Query: 556  tcgccttggagcattccggtgaaaactgcangcat 590
            |||||||| | |||||| ||||| || ||| ||||
Sbjct: 6186 tcgccttgcatcattccagtgaacacggcaggcat 6152



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 234  ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
            ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 6508 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 6458
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0019D06
          Length = 167405

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                         
Query: 376   gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
             ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 60900 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 60841

                                                                         
Query: 436   gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
             ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 60840 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 60781

                                                                         
Query: 496   gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
             || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 60780 gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 60721

                                                
Query: 556   tcgccttggagcattccggtgaaaactgcangcat 590
             |||||||| | |||||| ||||| || ||| ||||
Sbjct: 60720 tcgccttgcatcattccagtgaacacggcaggcat 60686



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                                
Query: 234   ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
             ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 61042 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 60992
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>dbj|AK072289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016G12, full
            insert sequence
          Length = 1606

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                        
Query: 376  gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
            ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 1165 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 1106

                                                                        
Query: 436  gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
            ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 1105 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 1046

                                                                        
Query: 496  gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
            || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 1045 gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 986

                                               
Query: 556  tcgccttggagcattccggtgaaaactgcangcat 590
            |||||||| | |||||| ||||| || ||| ||||
Sbjct: 985  tcgccttgcatcattccagtgaacacggcaggcat 951



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 234  ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
            ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 1307 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 1257
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>dbj|AK060202.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-G08, full
            insert sequence
          Length = 1633

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 171/215 (79%)
 Strand = Plus / Minus

                                                                        
Query: 376  gtgaagaggaagctggtcttgccctccttgtccttgggtattatatcaggtatgcctcca 435
            ||||| |||||||||||||| || ||||  || |  || ||||||||||| |  || |||
Sbjct: 1089 gtgaacaggaagctggtcttcccttcctgatcttctggaattatatcaggaacaccacca 1030

                                                                        
Query: 436  gcacgagctgccacaaccggtactccagaagccatggactccagcactacttgtccgagg 495
            ||||||||||| || ||||| |||||||| | |||||||||||| |||||||| || || 
Sbjct: 1029 gcacgagctgcaacgaccgggactccagatgacatggactccaggactacttgaccaagt 970

                                                                        
Query: 496  gtctcagactctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcc 555
            || || ||||| || |||||  | || || || || |||||||| || || || ||||| 
Sbjct: 969  gtttcggactccgagggcatcacgaaaacatcaccgctggcatatgcctgtgatagctct 910

                                               
Query: 556  tcgccttggagcattccggtgaaaactgcangcat 590
            |||||||| | |||||| ||||| || ||| ||||
Sbjct: 909  tcgccttgcatcattccagtgaacacggcaggcat 875



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 234  ctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctc 284
            ||||||||| ||| |||| || || | |||||||||||| |||||||||||
Sbjct: 1231 ctcgttgcggatcttcttggaagctgctctccagtcgcacttctccatctc 1181
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>ref|XM_476339.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2132

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                        
Query: 385  aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
            ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 1359 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 1300

                                                                        
Query: 445  gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
            || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 1299 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 1240

                                                                       
Query: 505  tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
            || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 1239 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 1181
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
             complete sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                         
Query: 385   aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
             ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 19629 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 19570

                                                                         
Query: 445   gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
             || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 19569 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 19510

                                                                        
Query: 505   tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
             || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 19509 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 19451
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1026C12
          Length = 170240

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                         
Query: 385   aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
             ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 18928 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 18869

                                                                         
Query: 445   gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
             || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 18868 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 18809

                                                                        
Query: 505   tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
             || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 18808 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 18750
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>dbj|AK066040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013048L15, full
            insert sequence
          Length = 2131

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                        
Query: 385  aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
            ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 1358 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 1299

                                                                        
Query: 445  gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
            || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 1298 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 1239

                                                                       
Query: 505  tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
            || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 1238 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 1180
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>dbj|AK061192.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F08, full
           insert sequence
          Length = 1294

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                       
Query: 385 aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
           ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 548 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 489

                                                                       
Query: 445 gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
           || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 488 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 429

                                                                      
Query: 505 tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
           || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 428 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 370
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>dbj|AP008222.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
             fosmid clone:OSJNOa219C16
          Length = 39990

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                         
Query: 385   aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
             ||||||||||| |||||||  ||||  ||||| ||||||||||| |||||||||||||||
Sbjct: 19629 aagctggtcttaccctcctgatcctctggtataatatcaggtattcctccagcacgagct 19570

                                                                         
Query: 445   gccacaaccggtactccagaagccatggactccagcactacttgtccgagggtctcagac 504
             || || || || ||||| || | ||| | ||||| ||| ||    || || || || |||
Sbjct: 19569 gcaactacgggaactcctgatgacatagcctccaacacaacaaaaccaagcgtttctgac 19510

                                                                        
Query: 505   tctgaaggcattgcaaacacgtccccactggcatacgcttgcgagagctcctcgccttg 563
             || ||||||||  ||||||| |||||||||||||| || ||||| ||||| || |||||
Sbjct: 19509 tcagaaggcatcacaaacacatccccactggcataggcctgcgatagctcttctccttg 19451
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>gb|AC009343.9| Drosophila melanogaster clone BACR08L17, complete sequence
          Length = 182492

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 378   gaagaggaagctggtcttgccc 399
             ||||||||||||||||||||||
Sbjct: 91757 gaagaggaagctggtcttgccc 91778
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>ref|NM_078963.2| Drosophila melanogaster Rab-protein 3 CG7576-RA (Rab3), mRNA
          Length = 3751

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 378 gaagaggaagctggtcttgccc 399
           ||||||||||||||||||||||
Sbjct: 723 gaagaggaagctggtcttgccc 702
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>gb|AY060449.1| Drosophila melanogaster LP05860 full length cDNA
          Length = 3762

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 378 gaagaggaagctggtcttgccc 399
           ||||||||||||||||||||||
Sbjct: 723 gaagaggaagctggtcttgccc 702
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>dbj|AB112932.1| Drosophila melanogaster rab3 mRNA for Rab3, complete cds
          Length = 663

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 378 gaagaggaagctggtcttgccc 399
           ||||||||||||||||||||||
Sbjct: 117 gaagaggaagctggtcttgccc 96
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>gb|AY109049.1| Zea mays PCO094720 mRNA sequence
          Length = 805

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 79/98 (80%)
 Strand = Plus / Minus

                                                                       
Query: 385 aagctggtcttgccctccttgtccttgggtattatatcaggtatgcctccagcacgagct 444
           ||||||||| | |||||||  ||||  ||||| ||||||||||| ||||| || ||||| 
Sbjct: 122 aagctggtcctcccctcctgatcctcaggtatgatatcaggtattcctccggcgcgagcc 63

                                                 
Query: 445 gccacaaccggtactccagaagccatggactccagcac 482
            | || ||||| ||||| || | ||||| |||||||||
Sbjct: 62  ccgactaccggaactcctgatgacatggcctccagcac 25



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 tgctcgttgcgtatcgtcttcgaggccgttctccagtcgcagttctccatctcctccctg 291
           ||||||||||| ||| || |||  |||| || ||||||  | ||||||||||||| ||||
Sbjct: 275 tgctcgttgcggatcttcctcgtcgccgctcgccagtcaaacttctccatctccttcctg 216

                
Query: 292 gcagc 296
           |||||
Sbjct: 215 gcagc 211
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>gb|AE003828.4| Drosophila melanogaster chromosome 2R, section 22 of 73 of the complete
             sequence
          Length = 257907

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 378   gaagaggaagctggtcttgccc 399
             ||||||||||||||||||||||
Sbjct: 83671 gaagaggaagctggtcttgccc 83692
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>gb|M64621.1|DRORAB3 Drosophila rab3 protein, complete cds
          Length = 2306

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 378 gaagaggaagctggtcttgccc 399
           ||||||||||||||||||||||
Sbjct: 703 gaagaggaagctggtcttgccc 682
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>ref|XM_762506.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_442_21022_14681)
            partial mRNA
          Length = 6342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 548  agagctcctcgccttggagca 568
            |||||||||||||||||||||
Sbjct: 5827 agagctcctcgccttggagca 5807
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 218     tcgcggtgcggtagtgctcg 237
               ||||||||||||||||||||
Sbjct: 3204972 tcgcggtgcggtagtgctcg 3204953
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>gb|AC132416.2| Mus musculus BAC clone RP23-251A5 from chromosome 6, complete sequence
          Length = 157472

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 582   tgcangcatgcctgtgaacattt 604
             |||| ||||||||||||||||||
Sbjct: 38580 tgcaggcatgcctgtgaacattt 38558
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>ref|NM_010700.1| Mus musculus low density lipoprotein receptor (Ldlr), mRNA
          Length = 2834

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2402 ttgccctccttgtccttggg 2421
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>gb|BC053041.1| Mus musculus low density lipoprotein receptor, mRNA (cDNA clone
            MGC:62289 IMAGE:5704871), complete cds
          Length = 4494

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2549 ttgccctccttgtccttggg 2568
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>gb|AC161216.4| Mus musculus chromosome 7, clone RP23-8K23, complete sequence
          Length = 228889

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 565    agcattccggtgaaaactgc 584
              ||||||||||||||||||||
Sbjct: 186807 agcattccggtgaaaactgc 186788
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>gb|AC161371.4| Mus musculus BAC clone RP23-402N3 from chromosome 9, complete sequence
          Length = 203708

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ttgccctccttgtccttggg 413
             ||||||||||||||||||||
Sbjct: 61773 ttgccctccttgtccttggg 61754
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>gb|BC019207.1| Mus musculus low density lipoprotein receptor, mRNA (cDNA clone
            MGC:29127 IMAGE:5052599), complete cds
          Length = 4471

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2522 ttgccctccttgtccttggg 2541
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>gb|AC102077.7| Mus musculus chromosome 7, clone RP23-423B21, complete sequence
          Length = 229721

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   agcattccggtgaaaactgc 584
             ||||||||||||||||||||
Sbjct: 83157 agcattccggtgaaaactgc 83138
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>emb|Z19521.1|MMLDLRMR M.musculus Ldlr mRNA encoding low density lipoprotein receptor
          Length = 2834

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2402 ttgccctccttgtccttggg 2421
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>emb|X64414.1|MMLDLREC Mus musculus mRNA for low density lipoprotein receptor precursor
          Length = 4467

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2523 ttgccctccttgtccttggg 2542
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>gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome 6, complete sequence
          Length = 294389

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 582    tgcangcatgcctgtgaacattt 604
              |||| ||||||||||||||||||
Sbjct: 115626 tgcaggcatgcctgtgaacattt 115648
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>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete
             sequence
          Length = 198197

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   ttctccatctcctccctggc 293
             ||||||||||||||||||||
Sbjct: 48909 ttctccatctcctccctggc 48890
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>dbj|AK135100.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430588H09 product:transmembrane
            6 superfamily member 1, full insert sequence
          Length = 3419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 565  agcattccggtgaaaactgc 584
            ||||||||||||||||||||
Sbjct: 2490 agcattccggtgaaaactgc 2509
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>gb|AC095050.3| Homo sapiens BAC clone RP11-287F9 from 4, complete sequence
          Length = 220878

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 552    ctcctcgccttggagcattc 571
              ||||||||||||||||||||
Sbjct: 179430 ctcctcgccttggagcattc 179449
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>dbj|AK149950.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:G530109H06 product:low density lipoprotein
            receptor, full insert sequence
          Length = 3468

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2542 ttgccctccttgtccttggg 2561
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>dbj|AK151968.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830044C16 product:low density lipoprotein
            receptor, full insert sequence
          Length = 4497

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2571 ttgccctccttgtccttggg 2590
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>dbj|AK152103.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched
            library, clone:I830047K21 product:low density lipoprotein
            receptor, full insert sequence
          Length = 4467

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2540 ttgccctccttgtccttggg 2559
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>dbj|AK160006.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
            library, clone:I420043N04 product:low density lipoprotein
            receptor, full insert sequence
          Length = 4461

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2542 ttgccctccttgtccttggg 2561
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>dbj|AK166466.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length
            enriched library, clone:G930025L18 product:low density
            lipoprotein receptor, full insert sequence
          Length = 4476

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2541 ttgccctccttgtccttggg 2560
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>gb|AF425607.1|AF425607 Mus musculus low density lipoprotein receptor mRNA, complete cds
          Length = 2855

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2452 ttgccctccttgtccttggg 2471
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>dbj|AK170264.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630039D01
            product:low density lipoprotein receptor, full insert
            sequence
          Length = 4326

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 2393 ttgccctccttgtccttggg 2412
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>dbj|AK046714.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430320J11 product:transmembrane
            6 superfamily member 1, full insert sequence
          Length = 2961

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 565  agcattccggtgaaaactgc 584
            ||||||||||||||||||||
Sbjct: 2409 agcattccggtgaaaactgc 2428
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>dbj|AK037670.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130035N10 product:low density lipoprotein
            receptor, full insert sequence
          Length = 3051

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 394  ttgccctccttgtccttggg 413
            ||||||||||||||||||||
Sbjct: 1126 ttgccctccttgtccttggg 1145
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>gb|L29568.1|AH005854S3 Bacteriophage LL-H  main tail protein gp19 (g17), minor structural
            protein gp75 (g70), minor structural protein gp89 (g88),
            minor structural protein gp58 (g71), and unknown protein
            genes, complete cds
          Length = 12951

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 387  gctggtcttgccctccttgtcctt 410
            |||||||||||||| |||||||||
Sbjct: 7313 gctggtcttgcccttcttgtcctt 7290
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>gb|AC098808.3| Papio anubis clone RP41-17K4, complete sequence
          Length = 157557

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   ccagaagccatggactccag 479
             ||||||||||||||||||||
Sbjct: 88607 ccagaagccatggactccag 88626
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>gb|AC012527.7| Homo sapiens chromosome 15, clone RP11-44J20, complete sequence
          Length = 162955

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   ccagaagccatggactccag 479
             ||||||||||||||||||||
Sbjct: 66264 ccagaagccatggactccag 66245
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>gb|AC131315.16| Mus musculus chromosome 7, clone RP24-535I10, complete sequence
          Length = 213958

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   agcattccggtgaaaactgc 584
             ||||||||||||||||||||
Sbjct: 51986 agcattccggtgaaaactgc 52005
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>ref|XM_310533.2| Anopheles gambiae str. PEST ENSANGP00000017306 (ENSANGG00000014817),
            partial mRNA
          Length = 3432

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  ccccgggtgtgaagaggaag 387
            ||||||||||||||||||||
Sbjct: 3079 ccccgggtgtgaagaggaag 3060
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>gb|AC006367.3|AC006367 Homo sapiens BAC clone RP11-167L9 from 7p14-p15, complete sequence
          Length = 130469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    ccagaagccatggactccag 479
              ||||||||||||||||||||
Sbjct: 124910 ccagaagccatggactccag 124929
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>emb|CT030165.7| M.truncatula DNA sequence from clone MTH2-150K22 on chromosome 3,
              complete sequence
          Length = 134390

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                          
Query: 415    attatatcaggtatgcctccagcacgagctgccacaaccggtactccagaagccatggac 474
              |||||||| || ||||||||||| || |||||||| || ||||  || |||| ||||| |
Sbjct: 124420 attatatctggaatgcctccagcgcgtgctgccaccacaggtatccccgaagacatggcc 124361

                  
Query: 475    tcca 478
              ||||
Sbjct: 124360 tcca 124357
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>emb|CR974451.9| Mouse DNA sequence from clone RP24-180B11 on chromosome 17, complete
             sequence
          Length = 188873

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cagttctccatctcctccct 290
             ||||||||||||||||||||
Sbjct: 79080 cagttctccatctcctccct 79061
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>gb|AY826432.1| Mus musculus mediator of DNA damage checkpoint 1 (Mdc1) gene, complete
             cds
          Length = 15898

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 271   cagttctccatctcctccct 290
             ||||||||||||||||||||
Sbjct: 12957 cagttctccatctcctccct 12938


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,922,503
Number of Sequences: 3902068
Number of extensions: 3922503
Number of successful extensions: 71786
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71534
Number of HSP's gapped (non-prelim): 240
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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