Clone Name | rbasdl12 |
---|---|
Clone Library Name | barley_pub |
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 281 bits (718), Expect = 2e-75 Identities = 132/163 (80%), Positives = 140/163 (85%) Frame = -1 Query: 658 DWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWXX 479 D WRNEQFWVIGGVSAHLFAVFQG LKVL GVDTNFTVTSK +DEAD FGDLYLFKW Sbjct: 887 DLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEADEFGDLYLFKWTT 946 Query: 478 XXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQN 299 +NMVG+VAGVSDA+NNGYGSWGPLFGKLFF+FWVIVHLYPFLKGLMGRQN Sbjct: 947 LLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQN 1006 Query: 298 RTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 RTPTIVVLWS+LLASIFSLVWVRIDPF+ K GP+LK CGV C Sbjct: 1007 RTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPLLKQCGVDC 1049
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 262 bits (669), Expect = 8e-70 Identities = 122/164 (74%), Positives = 135/164 (82%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 E+WWRNEQFWVIGG+SAHLFAV QG LK+L G+DTNFTVTSKA D D FG+LY FKW Sbjct: 865 EEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDD--DDFGELYAFKWT 922 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN+VG+VAG+SDA+NNGY SWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ Sbjct: 923 TLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 982 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 NRTPTIVV+WSVLLASIFSL+WVRIDPF+ K KGP CG+ C Sbjct: 983 NRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTSKCGINC 1026
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 254 bits (650), Expect = 1e-67 Identities = 118/164 (71%), Positives = 136/164 (82%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 ++WWRNEQFWVIGGVSAHLFAVFQG LKVL G+DTNFTVTSKA ++ D F +LYLFKW Sbjct: 903 DEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGD-FAELYLFKWT 961 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 +N+VG+VAGVS A+N+GY SWGPLFGKLFF+FWVIVHLYPFLKGLMGRQ Sbjct: 962 TLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQ 1021 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 NRTPTIVV+WSVLLASIFSL+WVRIDPF ++ GP + CG+ C Sbjct: 1022 NRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDILECGINC 1065
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 241 bits (615), Expect = 1e-63 Identities = 111/164 (67%), Positives = 137/164 (83%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 +DWWRNEQFWVIGGVSAHLFA+FQG LKVL GVDTNFTVTSKA AD+ + F DLYLFKW Sbjct: 923 DDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKA-ADDGE-FSDLYLFKWT 980 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN++G++ GVSDA++NGY SWGPLFG+LFF+ WVI+HLYPFLKGL+G+Q Sbjct: 981 SLLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQ 1040 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 +R PTI+V+WS+LLASI +L+WVR++PF+AK GPIL+ CG+ C Sbjct: 1041 DRMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 238 bits (606), Expect = 2e-62 Identities = 107/164 (65%), Positives = 138/164 (84%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 +DWWRNEQFWVIGGVSAHLFA+FQG LKVL GV+TNFTVTSKA AD+ + F +LY+FKW Sbjct: 908 DDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKA-ADDGE-FSELYIFKWT 965 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN++G++ G+SDA++NGY SWGPLFG+LFF+FWVI+HLYPFLKGL+G+Q Sbjct: 966 SLLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQ 1025 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 +R PTI+++WS+LLASI +L+WVR++PF+AK GPIL+ CG+ C Sbjct: 1026 DRMPTIILVWSILLASILTLLWVRVNPFVAK-GGPILEICGLDC 1068
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 236 bits (603), Expect = 3e-62 Identities = 107/164 (65%), Positives = 136/164 (82%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 +DWWRNEQFWVIGGVS+HLFA+FQG LKVL GV TNFTVTSKA AD+ + F +LY+FKW Sbjct: 926 DDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKA-ADDGE-FSELYIFKWT 983 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN+VG++ GVSDA+NNGY SWGPLFG+LFF+ WVIVHLYPFLKGL+G+Q Sbjct: 984 SLLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQ 1043 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 +R PTI+++WS+LLASI +L+WVR++PF++K GP+L+ CG+ C Sbjct: 1044 DRVPTIILVWSILLASILTLLWVRVNPFVSK-DGPVLEICGLDC 1086
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 235 bits (599), Expect = 1e-61 Identities = 109/149 (73%), Positives = 125/149 (83%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 EDWWRNEQFWVIGG SAHLFAVFQG LKVL G+DTNFTVTSKA ++ D F +LY+FKW Sbjct: 918 EDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGD-FAELYIFKWT 976 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 +N++GIVAGVS AVN+GY SWGPLFGKLFF+ WVI HLYPFLKGL+GRQ Sbjct: 977 ALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQ 1036 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFI 215 NRTPTIV++WSVLLASIFSL+WVRI+PF+ Sbjct: 1037 NRTPTIVIVWSVLLASIFSLLWVRINPFV 1065
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 234 bits (597), Expect = 2e-61 Identities = 104/164 (63%), Positives = 134/164 (81%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 +DWWRNEQFWVIGG S+HLFA+FQG LKVL GV+TNFTVTSKA D AF +LY+FKW Sbjct: 922 DDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADD--GAFSELYIFKWT 979 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN++G++ GVSDA++NGY SWGPLFG+LFF+ WVIVHLYPFLKG++G+Q Sbjct: 980 TLLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQ 1039 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAKPKGPILKPCGVQC 170 ++ PTI+V+WS+LLASI +L+WVR++PF+AK GP+L+ CG+ C Sbjct: 1040 DKMPTIIVVWSILLASILTLLWVRVNPFVAK-GGPVLEICGLNC 1082
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 233 bits (595), Expect = 3e-61 Identities = 110/151 (72%), Positives = 129/151 (85%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 ED WRNEQFWVIGGVSAHLFAVFQGFLK+L G+DTNFTVTSK AD+ + FG+LY+ KW Sbjct: 822 EDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKT-ADDLE-FGELYIVKWT 879 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 IN+VG+VAG SDA+N GY +WGPLFGK+FF+FWVI+HLYPFLKGLMGRQ Sbjct: 880 TLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQ 939 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIAK 209 NRTPTIV+LWS+LLAS+FSLVWVRI+PF++K Sbjct: 940 NRTPTIVILWSILLASVFSLVWVRINPFVSK 970
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 230 bits (586), Expect = 3e-60 Identities = 105/150 (70%), Positives = 123/150 (82%) Frame = -1 Query: 661 EDWWRNEQFWVIGGVSAHLFAVFQGFLKVLGGVDTNFTVTSKAGADEADAFGDLYLFKWX 482 EDWWRNEQFWVIGG SAHLFAVFQG LKV G+DTNFTVTSKA ++ D F +LY+FKW Sbjct: 905 EDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGD-FAELYVFKWT 963 Query: 481 XXXXXXXXXXXINMVGIVAGVSDAVNNGYGSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 302 +N+VGIVAGVS A+N+GY SWGPL GKL F+FWV+ HLYPFLKGL+GRQ Sbjct: 964 SLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQ 1023 Query: 301 NRTPTIVVLWSVLLASIFSLVWVRIDPFIA 212 NRTPTIV++WS LLASIFSL+WVRI+PF++ Sbjct: 1024 NRTPTIVIVWSALLASIFSLLWVRINPFVS 1053
>41_HUMAN (P11171) Protein 4.1 (Band 4.1) (P4.1) (EPB4.1) (4.1R)| Length = 864 Score = 31.6 bits (70), Expect = 2.2 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = +3 Query: 342 TMTQKEKKSFPKSGPQDPYPLLTA----SDTPATMPTMLIMMSVVGGISRVVHLKR 497 T+T + ++ SG DP LLTA S+TP++ T I +V GGIS KR Sbjct: 764 TITYEAAQTDDNSGDLDPGVLLTAQTITSETPSSTTTTQITKTVKGGISETRIEKR 819
>ENO_NEOFR (P42894) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 436 Score = 31.6 bits (70), Expect = 2.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 470 DQQGCPLEEVEVTECIGLISARLGGDSEVGVHSAQHLEEALE 595 D +G P EVEVT GL A + + GVH A L + ++ Sbjct: 13 DSRGNPTVEVEVTTDKGLFRAAVPSGASTGVHEALELRDGIK 54
>ACKA_PHOLL (Q7N2I1) Acetate kinase (EC 2.7.2.1) (Acetokinase)| Length = 400 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 210 LAMKGSILTHTREKMEASRTDQSTTMVGVRFCLPMSPLRNG*RWTMTQKEKKSFP 374 +A G + H EK AS T + G++ +P +PL N ++ KK FP Sbjct: 85 IAAIGHRIVHGGEKFTASVTINDEVIQGIKDAVPFAPLHNPAHLIGIEEAKKGFP 139
>NASP_HUMAN (P49321) Nuclear autoantigenic sperm protein (NASP)| Length = 788 Score = 31.2 bits (69), Expect = 2.9 Identities = 18/57 (31%), Positives = 28/57 (49%) Frame = +2 Query: 116 YNAPKVQCVQAIDN*AESALYSTRLKNGSLGLGNEGVDPDPHKGEDGGEQDRPEHND 286 Y +C +A +S L R++NG LG EGV + +GE ++ E+ND Sbjct: 77 YGETANECGEAFFFYGKSLLELARMENGVLGNALEGVHVEEEEGEKTEDESLVENND 133
>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox| protein PBX4) Length = 378 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +3 Query: 351 QKEKKSFPKSGPQDPYPLLTASDTPATMPTMLIMMSVVGGI 473 Q +S P GP P PL SD T+ T+ + GG+ Sbjct: 303 QSSCQSTPSPGPCGPLPLTNGSDVVLTLRTLAFLQPPTGGV 343
>VRK2_HUMAN (Q86Y07) Serine/threonine-protein kinase VRK2 (EC 2.7.11.1)| (Vaccinia-related kinase 2) Length = 508 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Frame = +3 Query: 144 KPLTTKLNQHCTPHGLRMGPLGLAMKG-SILTHTREKMEASRTDQSTTMV 290 KP L + PHG+ +GPL + KG SI HT + +T V Sbjct: 303 KPNYQALKKILNPHGIPLGPLDFSTKGQSINVHTPNSQKVDSQKAATKQV 352
>MURA_DESDG (Q315P9) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 416 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +2 Query: 458 RGGRDQQGCPLEEVEVTECIGLISARLGGDSEVGVHSAQHLEEALEDGEQ 607 RGGR +G P+ ++ L+ A L E V HL+ E E+ Sbjct: 353 RGGRQLRGAPVMASDLRASASLVLAGLAAQGETHVQRIYHLDRGYESIEE 402
>ENO_DROME (P15007) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 500 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 470 DQQGCPLEEVEVTECIGLISARLGGDSEVGVHSAQHLEE 586 D +G P EV++T +GL A + + GVH A L + Sbjct: 80 DSRGNPTVEVDLTTELGLFRAAVPSGASTGVHEALELRD 118
>ENO_CUNEL (O74286) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) (Fragment) Length = 436 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +2 Query: 470 DQQGCPLEEVEVTECIGLISARLGGDSEVGVHSAQHLEEALE 595 D +G P EVEVT G+ A + + GVH A L + ++ Sbjct: 13 DSRGNPTVEVEVTTDKGVFRAGVPSGASTGVHEALELRDGVK 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,095,113 Number of Sequences: 219361 Number of extensions: 1821596 Number of successful extensions: 5913 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5609 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5896 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)