ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdl11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY029315.1| Zea mays seven transmembrane protein Mlo4 mRNA, complete cds Length = 1841 Score = 196 bits (99), Expect = 7e-47 Identities = 277/335 (82%), Gaps = 6/335 (1%) Strand = Plus / Minus Query: 373 tcgtccagggacgatgccgacacagtccttgacagcgtgcacaccgtgttggtctcgtgg 432 |||||||| |||| |||||| | ||||| |||||||||||||||||||| |||||||| Sbjct: 1542 tcgtccagcgacgtcgccgacgccgtcctcgacagcgtgcacaccgtgttcgtctcgtga 1483 Query: 433 tcggtctcatagatggtcgtgtcgagggagcagaccgacctcgacgtgagtgtcccgttc 492 || ||||| ||| |||| ||| |||||||| || || || | |||||| ||||||||| Sbjct: 1482 tccgtctcgtaggtggt---gtctagggagcacacggatctggtcgtgagggtcccgttc 1426 Query: 493 cgcatgaagagcggattgtgcc---tcctctctttgatcctcttgcaccagctgtggagg 549 ||| ||||||||||||||| | |||| || || | |||||||||||||||||| || Sbjct: 1425 cgcgagaagagcggattgtgtcggctcctgtccttaaccctcttgcaccagctgtgcagc 1366 Query: 550 gagtccctcacgctctcggagaccagtgacttcttgaacttggaacccatctgggagata 609 || ||||||||| |||| ||||||||||| ||||||||||||||||||||||| || ||| Sbjct: 1365 gactccctcacgttctccgagaccagtgatttcttgaacttggaacccatctgagaaata 1306 Query: 610 atcacgttaagaggcagcgtactgtagctgcaccaaacttgaacaagcaacccagaagcc 669 ||||| || || ||||| || |||||||||||||||| ||||| || | ||||||| | Sbjct: 1305 atcacattcagcggcagtgtgctgtagctgcaccaaaactgaactaggagcccagaaatc 1246 Query: 670 aagcgaataaccaccatgtactggttcttcatgaa 704 || ||||| | |||||||| | || ||||||||| Sbjct: 1245 aaccgaatggcaaccatgtagtagtgcttcatgaa 1211
>gb|AY103929.1| Zea mays PCO095788 mRNA sequence Length = 1679 Score = 176 bits (89), Expect = 7e-41 Identities = 231/277 (83%), Gaps = 6/277 (2%) Strand = Plus / Minus Query: 373 tcgtccagggacgatgccgacacagtccttgacagcgtgcacaccgtgttggtctcgtgg 432 |||||||| |||| |||||| | ||||| |||||||||||||||||||| |||||||| Sbjct: 1544 tcgtccagcgacgtcgccgacgccgtcctcgacagcgtgcacaccgtgttcgtctcgtga 1485 Query: 433 tcggtctcatagatggtcgtgtcgagggagcagaccgacctcgacgtgagtgtcccgttc 492 || ||||| ||| |||| ||| |||||||| || || || | |||||| ||||||||| Sbjct: 1484 tccgtctcgtaggtggt---gtctagggagcacacggatctggtcgtgagggtcccgttc 1428 Query: 493 cgcatgaagagcggattgtgcc---tcctctctttgatcctcttgcaccagctgtggagg 549 ||| ||||||||||||||| | |||| || || | |||||||||||||||||| || Sbjct: 1427 cgcgagaagagcggattgtgtcggctcctgtccttaaccctcttgcaccagctgtgcagc 1368 Query: 550 gagtccctcacgctctcggagaccagtgacttcttgaacttggaacccatctgggagata 609 || ||||||||| |||| ||||||||||| ||||||||||||| ||||||||| || ||| Sbjct: 1367 gactccctcacgttctccgagaccagtgatttcttgaacttgggacccatctgagaaata 1308 Query: 610 atcacgttaagaggcagcgtactgtagctgcaccaaa 646 ||||| || || || || || |||||||||||||||| Sbjct: 1307 atcacattcagcgggagtgtgctgtagctgcaccaaa 1271
>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0084H09, complete sequence Length = 130151 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 528 cctcttgcaccagctgtggagggagtccctcacgctctcggagaccagtgacttcttgaa 587 ||||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct: 42204 cctcttgcaccagctgtggagtgactccctcacactctctgagaccagtgatttcttgaa 42145 Query: 588 cttggaacccatctg 602 |||||| |||||||| Sbjct: 42144 cttggatcccatctg 42130
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 528 cctcttgcaccagctgtggagggagtccctcacgctctcggagaccagtgacttcttgaa 587 ||||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct: 4070542 cctcttgcaccagctgtggagtgactccctcacactctctgagaccagtgatttcttgaa 4070483 Query: 588 cttggaacccatctg 602 |||||| |||||||| Sbjct: 4070482 cttggatcccatctg 4070468
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 101 bits (51), Expect = 3e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 528 cctcttgcaccagctgtggagggagtccctcacgctctcggagaccagtgacttcttgaa 587 ||||||||||||||||||||| || |||||||| ||||| ||||||||||| |||||||| Sbjct: 4079236 cctcttgcaccagctgtggagtgactccctcacactctctgagaccagtgatttcttgaa 4079177 Query: 588 cttggaacccatctg 602 |||||| |||||||| Sbjct: 4079176 cttggatcccatctg 4079162
>gb|AC023484.5| Homo sapiens chromosome 3 clone RP11-454F24 map 3p, complete sequence Length = 192875 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ttataagtcaatacaaagatg 65 ||||||||||||||||||||| Sbjct: 143220 ttataagtcaatacaaagatg 143200
>gb|AC024167.6| Homo sapiens chromosome 3 clone RP11-453F3 map 3p, complete sequence Length = 188719 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ttataagtcaatacaaagatg 65 ||||||||||||||||||||| Sbjct: 75452 ttataagtcaatacaaagatg 75432
>emb|CR387919.7| Zebrafish DNA sequence from clone DKEY-120I24, complete sequence Length = 110378 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 532 ttgcaccagctgtggagggagtccctcac 560 |||||||||||| |||||| ||||||||| Sbjct: 22515 ttgcaccagctgaggagggggtccctcac 22487
>emb|AL645749.6| Mouse DNA sequence from clone RP23-195A2 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 54152 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ttactatgaagcttaggcagg 219 ||||||||||||||||||||| Sbjct: 16545 ttactatgaagcttaggcagg 16525
>gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190456 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 ttataagtcaatacaaagatg 65 ||||||||||||||||||||| Sbjct: 11735 ttataagtcaatacaaagatg 11715
>gb|AY228237.1| Andes virus strain CHI-7913 segment S nucleoprotein and putative non-structural protein genes, complete cds Length = 1802 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 209 gcttaggcaggaatggacact 229 ||||||||||||||||||||| Sbjct: 759 gcttaggcaggaatggacact 739
>gb|AC102918.11| Mus musculus chromosome 7, clone RP24-273E13, complete sequence Length = 128992 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 639 gcaccaaacttgaacaagcaa 659 ||||||||||||||||||||| Sbjct: 75890 gcaccaaacttgaacaagcaa 75870
>ref|NM_100975.2| Arabidopsis thaliana MLO4; calmodulin binding AT1G11000 (MLO4) mRNA, complete cds Length = 1971 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 tggttcttcatgaagcaaga 710 |||||||||||||||||||| Sbjct: 1245 tggttcttcatgaagcaaga 1226
>gb|AE010340.1| Methanopyrus kandleri AV19 section 39 of 157 of the complete genome Length = 6420 Score = 40.1 bits (20), Expect = 9.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 ctcctcgtcatcgacagtgatcgcggtc 366 ||||||||||||||||| ||||| |||| Sbjct: 1027 ctcctcgtcatcgacagcgatcgtggtc 1000
>gb|AE008987.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 13 of 256 of the complete sequence Length = 10619 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catgaggagcaatcacttgc 152 |||||||||||||||||||| Sbjct: 7494 catgaggagcaatcacttgc 7475
>gb|AC147253.3| Mus musculus BAC clone RP24-134K1 from chromosome Y, complete sequence Length = 183653 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 27597 cagttacacacatatatact 27616
>gb|AC099704.7| Mus musculus chromosome 15, clone RP23-256A2, complete sequence Length = 204704 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 gttcttcaagttcagtagag 249 |||||||||||||||||||| Sbjct: 11663 gttcttcaagttcagtagag 11682
>gb|AC142226.3| Mus musculus BAC clone RP24-243A16 from chromosome Y, complete sequence Length = 155805 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 125655 cagttacacacatatatact 125674
>gb|AC140405.4| Mus musculus BAC clone RP24-176I18 from chromosome Y, complete sequence Length = 197287 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 66684 cagttacacacatatatact 66703
>gb|AC104396.7| Mus musculus BAC clone RP23-413J8 from chromosome 3, complete sequence Length = 195860 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 cacacatatatactgggtaa 177 |||||||||||||||||||| Sbjct: 127892 cacacatatatactgggtaa 127873
>gb|AC117234.4| Mus musculus BAC clone RP23-410J2 from chromosome 6, complete sequence Length = 193027 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 695 tcttcatgaagcaagaattt 714 |||||||||||||||||||| Sbjct: 18588 tcttcatgaagcaagaattt 18569
>gb|AC131773.3| Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence Length = 168423 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 gttcttcaagttcagtagag 249 |||||||||||||||||||| Sbjct: 127719 gttcttcaagttcagtagag 127700
>gb|BT010322.1| Arabidopsis thaliana At1g11000 mRNA, complete cds Length = 1722 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 tggttcttcatgaagcaaga 710 |||||||||||||||||||| Sbjct: 1175 tggttcttcatgaagcaaga 1156
>emb|AL596245.3| Human DNA sequence from clone RP11-573C10 on chromosome X, complete sequence Length = 175618 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 ttgtgcctcctctctttgat 527 |||||||||||||||||||| Sbjct: 10890 ttgtgcctcctctctttgat 10909
>emb|AL121593.10|HSJ800C24 Human DNA sequence from clone RP4-800C24 on chromosome 20 Contains the RPL12P4 gene for ribosomal protein L12 pseudogene 4, complete sequence Length = 118150 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 ccagtgacttcttgaacttg 591 |||||||||||||||||||| Sbjct: 110124 ccagtgacttcttgaacttg 110143
>emb|CR855258.6| Zebrafish DNA sequence from clone DKEY-2N12 in linkage group 5, complete sequence Length = 141618 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 atggacactgttcttcaagt 240 |||||||||||||||||||| Sbjct: 69150 atggacactgttcttcaagt 69169
>gb|AC184104.1| Mus musculus chromosome UNK clone CH33-226F23, complete sequence Length = 191521 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 144047 cagttacacacatatatact 144028
>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180982 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttttctgcagttactatgaa 208 |||||||||||||||||||| Sbjct: 38171 ttttctgcagttactatgaa 38190
>gb|AC175382.3| Mus musculus BAC clone RP24-188F12 from chromosome y, complete sequence Length = 163669 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 28877 cagttacacacatatatact 28858
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 catgaggagcaatcacttgc 152 |||||||||||||||||||| Sbjct: 138274 catgaggagcaatcacttgc 138255
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 gttgtgaattctgaagatttagta 39 ||||||||||| |||||||||||| Sbjct: 44031 gttgtgaattccgaagatttagta 44008
>gb|AC154994.3| Mus musculus BAC clone RP24-251K18 from chromosome 9, complete sequence Length = 171682 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tcttcaagttcagtagagtt 251 |||||||||||||||||||| Sbjct: 124272 tcttcaagttcagtagagtt 124291
>emb|BX324171.9| Zebrafish DNA sequence from clone DKEYP-57C9 in linkage group 5, complete sequence Length = 151068 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 atggacactgttcttcaagt 240 |||||||||||||||||||| Sbjct: 35407 atggacactgttcttcaagt 35426
>dbj|AP006184.1| Sus scrofa CC chemokine receptor genes (CCR9, CXCR6, FYCO1), complete cds, clone: 0268F11 Length = 141824 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cagttacacacatatatact 171 |||||||||||||||||||| Sbjct: 6874 cagttacacacatatatact 6855
>gb|U95973.1|U95973 Arabidopsis thaliana chromosome 1 BAC T19D16 genomic sequence, complete sequence Length = 115641 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 tggttcttcatgaagcaaga 710 |||||||||||||||||||| Sbjct: 55319 tggttcttcatgaagcaaga 55300
>gb|AF369565.1| Arabidopsis thaliana membrane protein Mlo4 mRNA, complete cds Length = 1953 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 691 tggttcttcatgaagcaaga 710 |||||||||||||||||||| Sbjct: 1227 tggttcttcatgaagcaaga 1208
>emb|AL928887.13| Zebrafish DNA sequence from clone CH211-136O14 in linkage group 23, complete sequence Length = 174456 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgcagttacacacatatata 169 |||||||||||||||||||| Sbjct: 116953 tgcagttacacacatatata 116972
>gb|AC111037.8| Mus musculus chromosome 5, clone RP24-299M10, complete sequence Length = 155488 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 acagagtggccatgagacat 135 |||||||||||||||||||| Sbjct: 89343 acagagtggccatgagacat 89362
>gb|AY365907.1| HIV-1 isolate 114473 from Argentina pol protein (pol) gene, partial cds Length = 1497 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 675 aataaccaccatgtactggttctt 698 ||||| |||||||||||||||||| Sbjct: 1252 aataaacaccatgtactggttctt 1229
>gb|AC162803.2| Mus musculus BAC clone RP23-376G22 from chromosome 9, complete sequence Length = 164863 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tcttcaagttcagtagagtt 251 |||||||||||||||||||| Sbjct: 161692 tcttcaagttcagtagagtt 161673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,371,274 Number of Sequences: 3902068 Number of extensions: 5371274 Number of successful extensions: 131731 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131550 Number of HSP's gapped (non-prelim): 177 length of query: 724 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 701 effective length of database: 17,143,297,704 effective search space: 12017451690504 effective search space used: 12017451690504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
