ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdl08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPDEF_HUMAN (O95238) SAM pointed domain-containing Ets transcrip... 28 5.4

>SPDEF_HUMAN (O95238) SAM pointed domain-containing Ets transcription factor|
           (Prostate-derived Ets factor) (Prostate
           epithelium-specific Ets transcription factor)
           (Prostate-specific Ets)
          Length = 335

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 9   MHICXTTYARTYTDHRXEXYCSGRKAESWXKVKFTKDL 122
           +H C +T   ++TD   +  CSG+    W   +F K+L
Sbjct: 224 IHYCASTSEESWTDSEVDSSCSGQPIHLW---QFLKEL 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,378,804
Number of Sequences: 219361
Number of extensions: 170479
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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