>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 90/104 (86%), Gaps = 2/104 (1%)
 Strand = Plus / Minus

                                                                        
Query: 17   atgcnccacaacctatgctcgnacatacacagatcataganaag-aanattactgctctg 75
            |||| |||||||||||| ||| ||| ||||||||||||   ||| || | || |||||||
Sbjct: 1399 atgctccacaacctatgttcgtacaaacacagatcataccgaaggaaaaata-tgctctg 1341

                                                        
Query: 76   gtcggaaagcagagtcgtggncaaaagtgaagttcacaaaagac 119
            ||||| |||||||||| ||| |||||||||||||||||||||||
Sbjct: 1340 gtcgggaagcagagtcctggacaaaagtgaagttcacaaaagac 1297



 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 17   atgcnccacaacctatgctcgnacatacacagatcataganaagaanattactgctctgg 76
            |||| |||||||||||| | | |||||||||||||||| | || || | |  ||||  ||
Sbjct: 4453 atgctccacaacctatgtttgtacatacacagatcatacagaacaaaaattatgcttagg 4394

                                                
Query: 77   tcggaaagcagagtcgtggncaaaagtgaagttcac 112
            |||||||||||||||||||  |||||||||||||||
Sbjct: 4393 tcggaaagcagagtcgtggagaaaagtgaagttcac 4358



 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 83   agcagagtcgtggncaaaagtgaagttcacaaaagaccttc 123
            |||||||||||||  ||||||||||||||||||||||||||
Sbjct: 5737 agcagagtcgtggagaaaagtgaagttcacaaaagaccttc 5697

>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 89   gtcgtggncaaaagtgaagttcacaaaagaccttcatacgacataggccatt 140
            ||||||| |||||||||||||||||||||| ||||||| || ||||||||||
Sbjct: 1576 gtcgtggacaaaagtgaagttcacaaaagatcttcatatgagataggccatt 1525



 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 69   tgctctggtcggaaagcagagtcgtg 94
            ||||| ||||||||||||||||||||
Sbjct: 1610 tgctccggtcggaaagcagagtcgtg 1585

>ref|NM_104705.2| Arabidopsis thaliana ATTPS10; transferase, transferring glycosyl
           groups / trehalose-phosphatase AT1G60140 (ATTPS10) mRNA,
           complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  caaaagtgaagttcacaaaa 116
           ||||||||||||||||||||
Sbjct: 125 caaaagtgaagttcacaaaa 106

>gb|AC135567.3| Mus musculus BAC clone RP23-312I24 from chromosome 16, complete
             sequence
          Length = 208603

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     atttacatatgcatatatgc 20
             ||||||||||||||||||||
Sbjct: 85767 atttacatatgcatatatgc 85748

>ref|XM_845494.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC608463), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 agtgaagttcacaaaagacc 120
           ||||||||||||||||||||
Sbjct: 215 agtgaagttcacaaaagacc 234

>ref|XM_843482.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC606986), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 agtgaagttcacaaaagacc 120
           ||||||||||||||||||||
Sbjct: 215 agtgaagttcacaaaagacc 234

>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence
          Length = 195446

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atttacatatgcatatatgc 20
              ||||||||||||||||||||
Sbjct: 152904 atttacatatgcatatatgc 152885

>ref|XM_847054.1| PREDICTED: Canis familiaris similar to Transcription intermediary
           factor 1-alpha (TIF1-alpha) (Tripartite motif protein
           24) (RING finger protein 82) (LOC609728), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 agtgaagttcacaaaagacc 120
           ||||||||||||||||||||
Sbjct: 585 agtgaagttcacaaaagacc 604

>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence
          Length = 152251

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      atttacatatgcatatatgc 20
              ||||||||||||||||||||
Sbjct: 124179 atttacatatgcatatatgc 124198

>gb|AF238281.1| Arabidopsis thaliana trehalose-6-phosphate synthase 3 gene, promoter
            region
          Length = 1943

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   caaaagtgaagttcacaaaa 116
            ||||||||||||||||||||
Sbjct: 1290 caaaagtgaagttcacaaaa 1271

>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence
          Length = 116177

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    caaaagtgaagttcacaaaa 116
             ||||||||||||||||||||
Sbjct: 20673 caaaagtgaagttcacaaaa 20692

>emb|AL772245.7| Mouse DNA sequence from clone RP23-332K6 on chromosome 4, complete
             sequence
          Length = 70508

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atttacatatgcatatatgc 20
             ||||||||||||||||||||
Sbjct: 46374 atttacatatgcatatatgc 46393

>gb|AC084326.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-329J17, complete
            sequence
          Length = 149941

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    atttacatatgcatatatg 19
            |||||||||||||||||||
Sbjct: 9934 atttacatatgcatatatg 9916

>ref|NM_145076.3| Mus musculus tripartite motif protein 24 (Trim24), mRNA
          Length = 4053

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 880 gtgaagttcacaaaagacc 898

>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence
          Length = 196932

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   gtgaagttcacaaaagacc 120
             |||||||||||||||||||
Sbjct: 51331 gtgaagttcacaaaagacc 51349

>gb|BC052541.1| Mus musculus cDNA clone IMAGE:1225275
          Length = 1817

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 102  gtgaagttcacaaaagacc 120
            |||||||||||||||||||
Sbjct: 1232 gtgaagttcacaaaagacc 1214

>gb|BC056959.1| Mus musculus tripartite motif protein 24, mRNA (cDNA clone
           MGC:66731 IMAGE:5698079), complete cds
          Length = 4032

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 858 gtgaagttcacaaaagacc 876

>dbj|AK133144.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4931400M17 product:tripartite motif
           protein 24, full insert sequence
          Length = 3258

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 460 gtgaagttcacaaaagacc 478

>gb|AC083803.8| Homo sapiens 3q BAC RP11-142C12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 142719

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    ctgctctggtcggaaagca 86
             |||||||||||||||||||
Sbjct: 35971 ctgctctggtcggaaagca 35989

>gb|AC090787.7| Homo sapiens chromosome 18, clone RP11-373G16, complete sequence
          Length = 187770

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    aagtgaagttcacaaaaga 118
              |||||||||||||||||||
Sbjct: 115457 aagtgaagttcacaaaaga 115475

>gb|S78221.1| nuclear protein TIF1 isoform [mice, mRNA, 4053 nt]
          Length = 4053

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 880 gtgaagttcacaaaagacc 898

>gb|S78219.1| nuclear protein TIF1 [mice, mRNA, 3951 nt]
          Length = 3951

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 880 gtgaagttcacaaaagacc 898

>dbj|AK084870.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
           library, clone:D430004I05 product:tripartite motif
           protein 24, full insert sequence
          Length = 2712

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 872 gtgaagttcacaaaagacc 890

>dbj|AB221637.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
           days
           neonate,strain=BALB/c),(tissue_type=testis,
           dev_stage=adult, strain=C57BL/6J), clone:V01Y037G13
          Length = 3156

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 580 gtgaagttcacaaaagacc 598

>gb|AC012152.13| Homo sapiens 3 BAC CTC-552C10 (Cal Tech Human BAC Library C) complete
             sequence
          Length = 180194

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    ctgctctggtcggaaagca 86
             |||||||||||||||||||
Sbjct: 12171 ctgctctggtcggaaagca 12153

>ref|XM_575434.1| PREDICTED: Rattus norvegicus similar to tripartite motif protein 24
           (LOC500083), mRNA
          Length = 840

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 645 gtgaagttcacaaaagacc 663

>gb|AC128716.2| Homo sapiens 3 BAC RP13-526J3 (Roswell Park Cancer institute Human BAC
             Library) complete sequence
          Length = 64931

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   aagtgaagttcacaaaaga 118
             |||||||||||||||||||
Sbjct: 50141 aagtgaagttcacaaaaga 50159

>gb|BC038640.1| Mus musculus cDNA clone IMAGE:1379357
          Length = 1808

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 102  gtgaagttcacaaaagacc 120
            |||||||||||||||||||
Sbjct: 1223 gtgaagttcacaaaagacc 1205

>emb|AL683816.6| Mouse DNA sequence from clone RP23-120E8 on chromosome 4, complete
            sequence
          Length = 216639

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    atttacatatgcatatatg 19
            |||||||||||||||||||
Sbjct: 2632 atttacatatgcatatatg 2650

>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete
              sequence
          Length = 228428

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      atttacatatgcatatatg 19
              |||||||||||||||||||
Sbjct: 158746 atttacatatgcatatatg 158764

>gb|M64429.1|MUSBRAF Mouse B-raf oncogene mRNA, complete cds
          Length = 2050

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 102 gtgaagttcacaaaagacc 120
           |||||||||||||||||||
Sbjct: 614 gtgaagttcacaaaagacc 632

>gb|AC112493.2| Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164480

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 1      atttacatatgcatatatg 19
              |||||||||||||||||||
Sbjct: 119693 atttacatatgcatatatg 119711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 776,830
Number of Sequences: 3902068
Number of extensions: 776830
Number of successful extensions: 59768
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59713
Number of HSP's gapped (non-prelim): 54
length of query: 140
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 119
effective length of database: 17,151,101,840
effective search space: 2040981118960
effective search space used: 2040981118960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)