ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdl06 |
|---|---|
| Clone Library Name | barley_pub |
>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84| homolog Length = 383 Score = 154 bits (388), Expect = 3e-37 Identities = 72/141 (51%), Positives = 101/141 (71%), Gaps = 2/141 (1%) Frame = -3 Query: 684 NITHKINKLSFGTEFPGAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKIDSNQF 505 N+TH I LSFG ++PG VNPLD T P + +QYF+KVVPT+Y + G + +NQF Sbjct: 241 NMTHYIKHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQF 300 Query: 504 SVTEHFR--DGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAG 331 SVT H + +G + + PGVF Y+ SP+ V TE++RSF H+LT +CAI+GG+FTVAG Sbjct: 301 SVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360 Query: 330 IIDSFIYHGQKALKKKMEIGK 268 +IDS IYH +A++KK+++GK Sbjct: 361 LIDSLIYHSARAIQKKIDLGK 381
>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84| Length = 383 Score = 154 bits (388), Expect = 3e-37 Identities = 72/141 (51%), Positives = 101/141 (71%), Gaps = 2/141 (1%) Frame = -3 Query: 684 NITHKINKLSFGTEFPGAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKIDSNQF 505 N+TH I LSFG ++PG VNPLD T P + +QYF+KVVPT+Y + G + +NQF Sbjct: 241 NMTHYIQHLSFGEDYPGIVNPLDHTNVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQF 300 Query: 504 SVTEHFR--DGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAG 331 SVT H + +G + + PGVF Y+ SP+ V TE++RSF H+LT +CAI+GG+FTVAG Sbjct: 301 SVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAG 360 Query: 330 IIDSFIYHGQKALKKKMEIGK 268 +IDS IYH +A++KK+++GK Sbjct: 361 LIDSLIYHSARAIQKKIDLGK 381
>ERGI1_BRARE (Q4V8Y6) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 105 bits (261), Expect = 2e-22 Identities = 59/145 (40%), Positives = 90/145 (62%), Gaps = 6/145 (4%) Frame = -3 Query: 684 NITHKINKLSFGTEFP-----GAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKI 520 ++TH I+KL+FG + GA N L GA Q + ++ Y +K+VPT+Y ++ G++ Sbjct: 145 DMTHIIHKLAFGAKLQVQHVQGAFNALGGADRLQSNALASHDYILKIVPTVYEELGGKQR 204 Query: 519 DSNQFSVT-EHFRDGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIF 343 S Q++V + + + R P ++F YD SPI V +TE R F ++T +CAI+GG F Sbjct: 205 FSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRRPFYRFITTICAIIGGTF 264 Query: 342 TVAGIIDSFIYHGQKALKKKMEIGK 268 TVAGIIDS I+ +A KK++IGK Sbjct: 265 TVAGIIDSCIFTASEAW-KKIQIGK 288
>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 99.8 bits (247), Expect = 7e-21 Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 6/145 (4%) Frame = -3 Query: 684 NITHKINKLSFGTEFP-----GAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKI 520 ++ H I+KLSFG GA N L GA + ++ Y +K+VPT+Y D+ G++ Sbjct: 145 DMRHIIHKLSFGNTLQVDNIHGAFNALGGADKLASKALESHDYVLKIVPTVYEDLNGKQQ 204 Query: 519 DSNQFSVTEH-FRDGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIF 343 S Q++V + + R P ++F YD SPI V +TE + ++T +CAI+GG F Sbjct: 205 FSYQYTVANKAYVAYSHTGRVVPAIWFRYDLSPITVKYTERRQPMYRFITTVCAIIGGTF 264 Query: 342 TVAGIIDSFIYHGQKALKKKMEIGK 268 TVAGI+DSFI+ +A KK+++GK Sbjct: 265 TVAGILDSFIFTASEAW-KKIQLGK 288
>ERGI1_MOUSE (Q9DC16) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 97.4 bits (241), Expect = 4e-20 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%) Frame = -3 Query: 684 NITHKINKLSFGTEFP-----GAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKI 520 ++TH I+KLSFG GA N L GA ++ Y +K+VPT+Y D G++ Sbjct: 145 DMTHTIHKLSFGDTLQVQNVHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQR 204 Query: 519 DSNQFSVT-EHFRDGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIF 343 S Q++V + + + R P ++F YD SPI V +TE + ++T +CAI+GG F Sbjct: 205 YSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTF 264 Query: 342 TVAGIIDSFIYHGQKALKKKMEIGK 268 TVAGI+DS I+ +A KK+++GK Sbjct: 265 TVAGILDSCIFTASEAW-KKIQLGK 288
>ERGI1_HUMAN (Q969X5) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 97.1 bits (240), Expect = 5e-20 Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 6/145 (4%) Frame = -3 Query: 684 NITHKINKLSFGTEFP-----GAVNPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGRKI 520 ++TH I+KLSFG GA N L GA ++ Y +K+VPT+Y D G++ Sbjct: 145 DMTHVIHKLSFGDTLQVQNIHGAFNALGGADRLTSNPLASHDYILKIVPTVYEDKSGKQR 204 Query: 519 DSNQFSVT-EHFRDGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAIVGGIF 343 S Q++V + + + R P ++F YD SPI V +TE + ++T +CAI+GG F Sbjct: 205 YSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTF 264 Query: 342 TVAGIIDSFIYHGQKALKKKMEIGK 268 TVAGI+DS I+ +A KK+++GK Sbjct: 265 TVAGILDSCIFTASEAW-KKIQLGK 288
>YMG7_YEAST (Q04651) Hypothetical 40.7 kDa protein in DAK1-ORC1 intergenic| region Length = 352 Score = 79.3 bits (194), Expect = 1e-14 Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 4/110 (3%) Frame = -3 Query: 675 HKINKLSFGTEFPGAVNPLDG-AQWTQPASDGTYQYFIKVVPTIYNDIRGRKIDSNQFSV 499 H IN+ SFG +P NPLD AQ+ Q TY Y+ VVPT++ + G ++D+NQ+SV Sbjct: 201 HVINEFSFGDFYPYIDNPLDNTAQFNQDEPLTTYVYYTSVVPTLFKKL-GAEVDTNQYSV 259 Query: 498 TEH---FRDGNVQPRPQPGVFFFYDFSPIKVIFTEENRSFLHYLTNLCAI 358 ++ ++D + PG+FF Y+F P+ ++ ++ SF+ +L L AI Sbjct: 260 NDYRYLYKDVAAKGDKMPGIFFKYNFEPLSIVVSDVRLSFIQFLVRLVAI 309
>YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I| Length = 390 Score = 73.2 bits (178), Expect = 7e-13 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 17/149 (11%) Frame = -3 Query: 684 NITHKINKLSFGTEFPGAV---NPLDGAQWTQPASDGTYQYFIKVVPTIYNDIRGR--KI 520 +++H I+ LSFG +V NPLDG +D Y+YFIK V + + I Sbjct: 241 DMSHSIHHLSFGPPLDASVHYSNPLDGTVKKVSTADYRYEYFIKCVSYQFMPLSKSTLPI 300 Query: 519 DSNQFSVTEH---FRDGNVQPRPQ--------PGVFFFYDFSPIKVIFTE-ENRSFLHYL 376 D+N+++VT+H R G + P PGV+F +D SP++VI + +F +L Sbjct: 301 DTNKYAVTQHERSIRGGREEKVPTHVNFHGGIPGVWFQFDISPMRVIERQVRGNTFGGFL 360 Query: 375 TNLCAIVGGIFTVAGIIDSFIYHGQKALK 289 +N+ A++GG T+A +D Y QK K Sbjct: 361 SNVLALLGGCVTLASFVDRGYYEVQKLKK 389
>YAE2_YEAST (P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 intergenic| region Length = 415 Score = 67.8 bits (164), Expect = 3e-11 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 30/161 (18%) Frame = -3 Query: 684 NITHKINKLSFGTEFPG----------------AVNPLDGAQWTQPASDGTYQ--YFIKV 559 N H IN LSFG A +PLDG Q + +Q YF K+ Sbjct: 249 NFNHIINHLSFGKPIQSHSKLLGNDKRHGGAVVATSPLDGRQVFPDRNTHFHQFSYFAKI 308 Query: 558 VPTIYNDIRGRKIDSNQFSVTEHFR---DGNVQPRPQ--------PGVFFFYDFSPIKVI 412 VPT Y + I++ QFS T H R G + P PG+F F++ SP+KVI Sbjct: 309 VPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKDHPNTLHVRGGIPGMFVFFEMSPLKVI 368 Query: 411 FTEEN-RSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKAL 292 E++ +++ ++ N +GG+ V ++D Y Q+++ Sbjct: 369 NKEQHGQTWSGFILNCITSIGGVLAVGTVMDKLFYKAQRSI 409
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 35.0 bits (79), Expect = 0.22 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 171 RHLVVFVAHTRDPPPYKPQNLENVRCGPGFICTCLS 278 +H V H PP PQ +V CGPG+ICT ++ Sbjct: 257 KHPVCVRNHVPPHPPPPPQICGSVNCGPGYICTIIN 292
>HB22_MOUSE (P01915) H-2 class II histocompatibility antigen, E-D beta chain| precursor Length = 264 Score = 30.4 bits (67), Expect = 5.3 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = -3 Query: 429 SPIKVIFTEENRSFLHYLTNLCAIVGGIFTVAGIIDSFIYHGQKALKKKMEIGKYR 262 SP + + FL Y+T+ C G V ++ FIY+ ++ L+ ++G+YR Sbjct: 21 SPPVALVRDTRPRFLEYVTSECHFYNGTQHVR-FLERFIYNREENLRFDSDVGEYR 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,468,788 Number of Sequences: 219361 Number of extensions: 2460112 Number of successful extensions: 5779 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5593 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5763 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
