Clone Name | rbasdl04 |
---|---|
Clone Library Name | barley_pub |
>gb|AY112270.1| Zea mays CL38706_1 mRNA sequence Length = 821 Score = 95.6 bits (48), Expect = 8e-17 Identities = 81/92 (88%) Strand = Plus / Plus Query: 116 catcatccttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaac 175 ||||| ||||||| ||||||||||| ||| || |||||||| | ||||||||||||||| Sbjct: 107 catcacccttctagtgacgccttgcctggtaaacctcttattgtatgcttgcactggaac 166 Query: 176 cagataacatctgacggagaagattctgaagt 207 || ||||||||||| |||||||||||||||| Sbjct: 167 caaataacatctgaaagagaagattctgaagt 198
>dbj|AK103883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150A11, full insert sequence Length = 1117 Score = 77.8 bits (39), Expect = 2e-11 Identities = 93/111 (83%) Strand = Plus / Minus Query: 123 cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaaccagataa 182 ||||||||||||||||||| || | |||||||||| | ||||| |||||||||||||||| Sbjct: 866 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaaccagataa 807 Query: 183 catctgacggagaagattctgaagtacaacatgacgcatccacgattgatg 233 | || || || |||||||||||| || | ||| ||||| || ||||||| Sbjct: 806 cctcagaaatagtagattctgaagtgcatcttgaagcatcaacaattgatg 756
>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02, complete sequence Length = 109969 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 123 cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaacc 176 ||||||||||||||||||| || | |||||||||| | ||||| |||||||||| Sbjct: 73771 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaacc 73718
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 4e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 123 cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaacc 176 ||||||||||||||||||| || | |||||||||| | ||||| |||||||||| Sbjct: 9091774 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaacc 9091721
>gb|AC113206.10| Mus musculus chromosome 6, clone RP23-320B19, complete sequence Length = 247349 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ggagaagattctgaagtacaa 211 ||||||||||||||||||||| Sbjct: 149338 ggagaagattctgaagtacaa 149358
>emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chromosome 13 Contains the 5' end of the HTR2A gene for 5-hydroxytryptamine (serotonin) receptor 2A and a novel gene, complete sequence Length = 204056 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 ctcttatcatgtgcttgcact 170 ||||||||||||||||||||| Sbjct: 175248 ctcttatcatgtgcttgcact 175228
>emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in linkage group 19 Contains two CpG islands, complete sequence Length = 175786 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 ttccaattgtaacatacatg 89 |||||||||||||||||||| Sbjct: 87108 ttccaattgtaacatacatg 87127
>gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, complete sequence Length = 163533 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 aacatgcttattattctttc 254 |||||||||||||||||||| Sbjct: 107842 aacatgcttattattctttc 107861
>gb|AC011797.8| Homo sapiens, clone RP11-17L5, complete sequence Length = 158389 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 aacatgcttattattctttc 254 |||||||||||||||||||| Sbjct: 8512 aacatgcttattattctttc 8531 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,402,868 Number of Sequences: 3902068 Number of extensions: 2402868 Number of successful extensions: 41359 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41329 Number of HSP's gapped (non-prelim): 29 length of query: 309 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 287 effective length of database: 17,147,199,772 effective search space: 4921246334564 effective search space used: 4921246334564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)