ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdl04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY112270.1| Zea mays CL38706_1 mRNA sequence 96 8e-17
2dbj|AK103883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
3gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome... 60 4e-06
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
5gb|AC113206.10| Mus musculus chromosome 6, clone RP23-320B19, co... 42 1.0
6emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chr... 42 1.0
7emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in... 40 4.1
8gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, com... 40 4.1
9gb|AC011797.8| Homo sapiens, clone RP11-17L5, complete sequence 40 4.1

>gb|AY112270.1| Zea mays CL38706_1 mRNA sequence
          Length = 821

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                       
Query: 116 catcatccttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaac 175
           ||||| ||||||| ||||||||||| ||| || ||||||||  | |||||||||||||||
Sbjct: 107 catcacccttctagtgacgccttgcctggtaaacctcttattgtatgcttgcactggaac 166

                                           
Query: 176 cagataacatctgacggagaagattctgaagt 207
           || |||||||||||  ||||||||||||||||
Sbjct: 167 caaataacatctgaaagagaagattctgaagt 198



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>dbj|AK103883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150A11, full
           insert sequence
          Length = 1117

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 93/111 (83%)
 Strand = Plus / Minus

                                                                       
Query: 123 cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaaccagataa 182
           ||||||||||||||||||| || | |||||||||| | ||||| ||||||||||||||||
Sbjct: 866 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaaccagataa 807

                                                              
Query: 183 catctgacggagaagattctgaagtacaacatgacgcatccacgattgatg 233
           | || ||   || |||||||||||| || | ||| ||||| || |||||||
Sbjct: 806 cctcagaaatagtagattctgaagtgcatcttgaagcatcaacaattgatg 756



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>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02,
             complete sequence
          Length = 109969

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 123   cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaacc 176
             ||||||||||||||||||| || | |||||||||| | ||||| ||||||||||
Sbjct: 73771 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaacc 73718



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                     
Query: 123     cttctaatgacgccttgcatgggaagcctcttatcatgtgcttgcactggaacc 176
               ||||||||||||||||||| || | |||||||||| | ||||| ||||||||||
Sbjct: 9091774 cttctaatgacgccttgcaaggtaggcctcttatcgtatgcttacactggaacc 9091721



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>gb|AC113206.10| Mus musculus chromosome 6, clone RP23-320B19, complete sequence
          Length = 247349

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 191    ggagaagattctgaagtacaa 211
              |||||||||||||||||||||
Sbjct: 149338 ggagaagattctgaagtacaa 149358



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>emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chromosome 13 Contains the 5'
              end of the HTR2A gene for 5-hydroxytryptamine (serotonin)
              receptor 2A and a novel gene, complete sequence
          Length = 204056

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 150    ctcttatcatgtgcttgcact 170
              |||||||||||||||||||||
Sbjct: 175248 ctcttatcatgtgcttgcact 175228



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>emb|AL732511.6| Zebrafish DNA sequence from clone CH211-140G4 in linkage group 19
             Contains two CpG islands, complete sequence
          Length = 175786

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    ttccaattgtaacatacatg 89
             ||||||||||||||||||||
Sbjct: 87108 ttccaattgtaacatacatg 87127



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>gb|AC069082.9| Homo sapiens chromosome 15, clone RP11-716C8, complete sequence
          Length = 163533

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    aacatgcttattattctttc 254
              ||||||||||||||||||||
Sbjct: 107842 aacatgcttattattctttc 107861



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>gb|AC011797.8| Homo sapiens, clone RP11-17L5, complete sequence
          Length = 158389

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  aacatgcttattattctttc 254
            ||||||||||||||||||||
Sbjct: 8512 aacatgcttattattctttc 8531


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,402,868
Number of Sequences: 3902068
Number of extensions: 2402868
Number of successful extensions: 41359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41329
Number of HSP's gapped (non-prelim): 29
length of query: 309
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 287
effective length of database: 17,147,199,772
effective search space: 4921246334564
effective search space used: 4921246334564
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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