ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdl01 |
|---|---|
| Clone Library Name | barley_pub |
>AASS_ARATH (Q9SMZ4) Alpha-aminoadipic semialdehyde synthase (LKR/SDH)| (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] Length = 1064 Score = 187 bits (475), Expect = 2e-47 Identities = 90/158 (56%), Positives = 121/158 (76%) Frame = -1 Query: 587 DDELISRLMMLGHCKEKELAVKILKTIKFLGLHEETEIPKDCSSAFSVICQRMEQRMAYG 408 ++E+ R++ LGH KE A K KTI FLG +EE E+P C S F C ME+++AY Sbjct: 909 EEEISKRIIKLGH--SKETAAKAAKTIVFLGFNEEREVPSLCKSVFDATCYLMEEKLAYS 966 Query: 407 HNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLL 228 NEQDMVLLHHEVEVE+ + + EKH ATLLEFG +NG++TTAMA TVG+PAAIGALLL Sbjct: 967 GNEQDMVLLHHEVEVEFLESKRIEKHTATLLEFGDIKNGQTTTAMAKTVGIPAAIGALLL 1026 Query: 227 LQNKVQRKGVIRPLQPEIYIPALEILDASGIKLIERVQ 114 +++K++ +GV+RPL+ E+Y+PAL+IL A GIKL+E+ + Sbjct: 1027 IEDKIKTRGVLRPLEAEVYLPALDILQAYGIKLMEKAE 1064
>LYS9_YEAST (P38999) Saccharopine dehydrogenase [NADP+, L-glutamate-forming]| (EC 1.5.1.10) (Saccharopine reductase) Length = 446 Score = 83.6 bits (205), Expect = 5e-16 Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%) Frame = -1 Query: 584 DELISRLMMLGHCKEKELAVKILKTIKFLGLHEETEIPKDCSSAFSVICQRMEQRMAYGH 405 ++LI+ + K+ E +IL +LGL + +I +A +C R+E+ M Y Sbjct: 293 EDLIASIDSKATWKDDEDRERILSGFAWLGLFSDAKITPR-GNALDTLCARLEELMQYED 351 Query: 404 NEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLL 225 NE+DMV+L H+ +E+ DG TE +TL+++GK ++MA TVG P AI +L Sbjct: 352 NERDMVVLQHKFGIEWADG-TTETRTSTLVDYGKV---GGYSSMAATVGYPVAIATKFVL 407 Query: 224 QNKVQRKGVIRPLQPEIYIPAL-EILDASGIKLIER 120 ++ G++ P PEI P + E+ D GI L E+ Sbjct: 408 DGTIKGPGLLAPYSPEINDPIMKELKDKYGIYLKEK 443
>LYS9_MAGGR (Q9P4R4) Saccharopine dehydrogenase [NADP+, L-glutamate-forming]| (EC 1.5.1.10) (Saccharopine reductase) Length = 450 Score = 74.7 bits (182), Expect = 2e-13 Identities = 43/158 (27%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Frame = -1 Query: 587 DDELISRLMMLGHCKEKELAVKILKTIKFLGLHEETEIPKDCSSAFSVICQRMEQRMAYG 408 + +++S ++ + E +I+ +K+LG+ + +I +A +C +E++M + Sbjct: 293 EQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPR-GNALDTLCATLEEKMQFE 351 Query: 407 HNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLL 228 E+D+V+L H+ E+E DG E ++L E+G +AMA VGVP A+ + Sbjct: 352 EGERDLVMLQHKFEIENKDGS-RETRTSSLCEYGAPIGSGGYSAMAKFVGVPCAVAVKFV 410 Query: 227 LQNKVQRKGVIRPLQPEIYIPAL-EILDASGIKLIERV 117 L + +GV+ P+ +I P + E+ + GI+ E+V Sbjct: 411 LDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKV 448
>AASS_HUMAN (Q9UDR5) Alpha-aminoadipic semialdehyde synthase, mitochondrial| precursor (LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH)] Length = 926 Score = 69.7 bits (169), Expect = 7e-12 Identities = 42/128 (32%), Positives = 71/128 (55%) Frame = -1 Query: 518 LKTIKFLGLHEETEIPKDCSSAFSVICQRMEQRMAYGHNEQDMVLLHHEVEVEYPDGRPT 339 L+ ++LGL + ++P+ S + + + +++YG E+DM+++ + +P G Sbjct: 794 LEAAEWLGLLGDEQVPQ-AESILDALSKHLVMKLSYGPEEKDMIVMRDSFGIRHPSGH-L 851 Query: 338 EKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVIRPLQPEIYIPAL 159 E L+ +G NG S AMA TVG+P A+ A +LL ++ KG++ P EIY P L Sbjct: 852 EHKTIDLVAYGDI-NGFS--AMAKTVGLPTAMAAKMLLDGEIGAKGLMGPFSKEIYGPIL 908 Query: 158 EILDASGI 135 E + A GI Sbjct: 909 ERIKAEGI 916
>AASS_MOUSE (Q99K67) Alpha-aminoadipic semialdehyde synthase, mitochondrial| precursor (LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH)] Length = 926 Score = 69.3 bits (168), Expect = 9e-12 Identities = 42/128 (32%), Positives = 71/128 (55%) Frame = -1 Query: 518 LKTIKFLGLHEETEIPKDCSSAFSVICQRMEQRMAYGHNEQDMVLLHHEVEVEYPDGRPT 339 L+ ++LGL + ++P+ S + + +++YG E+DM+++ + +P G Sbjct: 794 LEAAEWLGLLGDEQVPQ-AESIVDAFSKHLVSKLSYGPEEKDMIVMRDSFGIRHPSGH-L 851 Query: 338 EKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVIRPLQPEIYIPAL 159 E L+ +G NG S AMA TVG+P A+ A +LL +++ KG++ P EIY P L Sbjct: 852 ENKTIDLVVYGDF-NGFS--AMAKTVGLPTAMAAKMLLDGEIEAKGLMGPFTKEIYGPIL 908 Query: 158 EILDASGI 135 E + A GI Sbjct: 909 ERIKAEGI 916
>FHOD1_MOUSE (Q6P9Q4) FH1/FH2 domain-containing protein (Formin homolog| overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1) Length = 1196 Score = 32.3 bits (72), Expect = 1.2 Identities = 27/96 (28%), Positives = 39/96 (40%) Frame = -3 Query: 468 GLFKCIQCYLPTNGTENGLWPQ*AGYGTAPP*SGGGVPRRATHREAPSNAAGVRKDRERQ 289 G+ +Q +L T GT+ L Q Y +A G + A + AAG R++R + Sbjct: 304 GMEALVQRFLGTAGTDVDLRTQLTLYESALRLEDGDMEEAAA-----AAAAGGRRERRKP 358 Query: 288 VNHRHGPHRRGTGSDRSPALAPEQGSEERRDPASAT 181 + RR P APE GS P +T Sbjct: 359 SSEEGKRSRRSLEGGGCPVRAPEPGSTGSASPVGST 394
>PHNC1_HALMA (Q5V6B8) Phosphonates import ATP-binding protein phnC 1 (EC| 3.6.3.28) Length = 273 Score = 32.0 bits (71), Expect = 1.6 Identities = 28/73 (38%), Positives = 36/73 (49%) Frame = -1 Query: 353 DGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVIRPLQPEI 174 DG + ATL G+T R T AL+ + +GAL L +G I PL P+ Sbjct: 77 DGSSSTGSTATLAYQGETLVDRRT---ALSNVLTGRLGALSWL------RGFIEPLLPQH 127 Query: 173 YIPALEILDASGI 135 PALE LDA G+ Sbjct: 128 PEPALERLDAVGL 140
>NKX23_MOUSE (P97334) Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C)| (Nkx2-C) (Homeobox protein NK-2 homolog 3) Length = 362 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 237 GSYRCRYPDGEGHGGG*PAVLGLSELQQRC 326 GSY C YP G G GGG A + +Q C Sbjct: 286 GSYGCAYPTGGGGGGGGTASAATTAMQPAC 315
>FUT4_PANTR (Q659K9) Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside| 3-L-fucosyltransferase) (Fucosyltransferase 4) (FUCT-IV) (Fuc-TIV) Length = 405 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = -1 Query: 503 FLGLHEETEIPKDCSSAFSVI-CQRMEQRMAYGHNEQDMVLLHHEVEVEYPDGRP 342 F G H P DC F++ C+ + R +YG E VL HH V+ P P Sbjct: 73 FAGRHSAPRPPPDCRLRFNISGCRLLTDRASYG--EAQAVLFHHRDLVKGPPDWP 125
>FAS1_YARLI (P34229) Fatty acid synthase beta subunit (EC 2.3.1.86) [Includes:| 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.61); Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9); [Acyl-carrier-protein] acetyltransferase (EC 2. Length = 2086 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = -1 Query: 374 EVEVEYPDGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLLLQNKVQRKGVI 195 +VE+E+PD + + T++ + NG+ T + L G I L+ V R V Sbjct: 1203 QVEIEHPD-----EPENTVISAFEPINGKVTKVLELRKGAGDVISLQLIEARGVDRVPVA 1257 Query: 194 RPL----QPEI-YIPALEILDASGIKLIE 123 PL QP+I Y P +E++ ++ E Sbjct: 1258 LPLEFKYQPQIGYAPIVEVMTDRNTRIKE 1286
>ADCA_STRP3 (Q8K847) Zinc-binding protein adcA precursor| Length = 515 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Frame = -1 Query: 479 EIPKDCSSAFSVICQR--MEQRMAYGHNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFG 306 E+ KD ++A S Q+ + Q A+G+ D L + PD P+ K ATL ++ Sbjct: 195 ELDKDYTAALSDAKQKSFVTQHAAFGYMALDYGLNQISINGVIPDAEPSAKRIATLSKYV 254 Query: 305 K---------TENGRSTTA--MALTVGVPAAI 243 K EN S A +A GV AA+ Sbjct: 255 KKYGIKYIYFEENASSKVAKTLAKEAGVKAAV 286
>CACB2_RAT (Q8VGC3) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 655 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -3 Query: 357 PRRATHREAPSNAAGVRKDRERQVNHRHGPHRRGTGSDRSPALAPEQGSEERRDPA 190 PR A+ E V+K + R + H HR GTG S + ++E RD A Sbjct: 506 PRSASQAEEEPCLEPVKKSQHRSSSATHQNHRSGTGRGLSRQETFDSETQESRDSA 561
>CACB2_MOUSE (Q8CC27) Voltage-dependent L-type calcium channel beta-2 subunit| (CAB2) (Calcium channel, voltage-dependent, beta 2 subunit) Length = 655 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -3 Query: 357 PRRATHREAPSNAAGVRKDRERQVNHRHGPHRRGTGSDRSPALAPEQGSEERRDPA 190 PR A+ E V+K + R + H HR GTG S + ++E RD A Sbjct: 506 PRSASQAEEEPCLEPVKKSQHRSSSATHQNHRSGTGRGLSRQETFDSETQESRDSA 561
>ESPL1_MOUSE (P60330) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein| ESPL1) (Extra spindle poles-like 1 protein) Length = 2118 Score = 30.4 bits (67), Expect = 4.7 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Frame = -2 Query: 451 SVLFANEWNREWPMATMSRIWYCSTMKWRWSTPTGDPPRSTKQRCWSSERPRTAGQPPPW 272 S LFA+ W W+ +K S P +P + +Q+C R R A PPP Sbjct: 1280 SELFASSWG-----------WHPPLVK---SLPVLEPAKIRRQKCSGRGRRRIASVPPPL 1325 Query: 271 --PSPSGYRQR*EPCS 230 S G + PC+ Sbjct: 1326 HNSSQKGLEEEGPPCT 1341
>ADCA_STRP8 (Q8P1N2) Zinc-binding protein adcA precursor| Length = 515 Score = 30.4 bits (67), Expect = 4.7 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Frame = -1 Query: 479 EIPKDCSSAFSVICQR--MEQRMAYGHNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFG 306 E+ KD ++A S Q+ + Q A+G+ D L + PD P+ K ATL ++ Sbjct: 195 ELDKDYTAALSDAKQKSFVTQHAAFGYMALDYGLNQISINGVTPDAEPSAKRIATLSKYV 254 Query: 305 K---------TENGRSTTA--MALTVGVPAAI 243 K EN S A +A GV AA+ Sbjct: 255 KKYGIKYIYFEENASSKVAKTLAKEAGVKAAV 286
>ADCA_STRP6 (Q5XD15) Zinc-binding protein adcA precursor| Length = 515 Score = 30.4 bits (67), Expect = 4.7 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Frame = -1 Query: 479 EIPKDCSSAFSVICQR--MEQRMAYGHNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFG 306 E+ KD ++A S Q+ + Q A+G+ D L + PD P+ K ATL ++ Sbjct: 195 ELDKDYTAALSDAKQKSFVTQHAAFGYMALDYGLNQISINGVTPDAEPSAKRIATLSKYV 254 Query: 305 K---------TENGRSTTA--MALTVGVPAAI 243 K EN S A +A GV AA+ Sbjct: 255 KKYGIKYIYFEENASSKVAKTLAKEAGVKAAV 286
>ADCA_STRP1 (Q9A0L9) Zinc-binding protein adcA precursor| Length = 515 Score = 30.4 bits (67), Expect = 4.7 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 13/92 (14%) Frame = -1 Query: 479 EIPKDCSSAFSVICQR--MEQRMAYGHNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFG 306 E+ KD ++A S Q+ + Q A+G+ D L + PD P+ K ATL ++ Sbjct: 195 ELDKDYTAALSDAKQKSFVTQHAAFGYMALDYGLNQISINGVTPDAEPSAKRIATLSKYV 254 Query: 305 K---------TENGRSTTA--MALTVGVPAAI 243 K EN S A +A GV AA+ Sbjct: 255 KKYGIKYIYFEENASSKVAKTLAKEAGVKAAV 286
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 6.1 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -2 Query: 361 STPTGDPPRSTKQRCWSSERPRTAGQPPP 275 ST G PP ST S+ P+T G PPP Sbjct: 153 STAPGPPPPSTPSSGVSTTPPQTGGPPPP 181
>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1885 Score = 29.6 bits (65), Expect = 8.0 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Frame = -1 Query: 560 MLGHCKEKELAVKILKTIKFLGLHEE---TEIPKDCSSAF--SVICQRMEQRMAYGHNEQ 396 +L C+++ K+ K+ +G H + ++ P D F S +C + E+R Q Sbjct: 1521 LLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQ 1580 Query: 395 DMVLLHHEVEVEY-PDGRPTEK 333 + H++ VE+ P R TEK Sbjct: 1581 TLACFPHKILVEFSPWCRYTEK 1602
>DAPB_SYNP6 (Q5N0M4) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 273 Score = 29.6 bits (65), Expect = 8.0 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -1 Query: 407 HNEQDMVLLHHEVEVEYPDGRPTEKHQATLLEFGKTENGRSTTAMALTVGVPAAIGALLL 228 ++ +++ LHH+ + + P G + Q L E GKT N T G A+G + Sbjct: 153 YDHVEILELHHDQKADAPSGTAIKTAQM-LAELGKTFNPPKVTEKETMPGARGAVGPENI 211 Query: 227 LQNKVQRKGVI 195 + V+ G+I Sbjct: 212 RIHSVRLPGLI 222
>RDRP_ACLSP (P27738) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1884 Score = 29.6 bits (65), Expect = 8.0 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Frame = -1 Query: 560 MLGHCKEKELAVKILKTIKFLGLHEE---TEIPKDCSSAF--SVICQRMEQRMAYGHNEQ 396 +L C+++ K+ K+ +G H + ++ P D F S +C + E+R Q Sbjct: 1520 LLDQCRQEFEETKLSKSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQ 1579 Query: 395 DMVLLHHEVEVEY-PDGRPTEK 333 + H++ VE+ P R TEK Sbjct: 1580 TLACFPHKILVEFSPWCRYTEK 1601
>MAP2_RAT (P15146) Microtubule-associated protein 2 (MAP 2) (MAP-2)| Length = 1861 Score = 29.6 bits (65), Expect = 8.0 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = -1 Query: 461 SSAFSVICQRMEQRMAYGHNEQDMVLLHHEVEVEYPDGRP-----TEKHQATLLEFGKTE 297 S F+ Q E+R Y H+E+ VL+ E + E DG P EK + E+ KTE Sbjct: 1315 SVRFAAPVQPEEERRPYPHDEELEVLMAAEAQAEPKDGSPDAPATPEKEEVPFSEY-KTE 1373
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 24.6 bits (52), Expect(2) = 8.9 Identities = 13/40 (32%), Positives = 15/40 (37%) Frame = -3 Query: 252 GSDRSPALAPEQGSEERRDPASATGDLHPCAGDLGCVGHQ 133 G +PAL P G P S+ LH G HQ Sbjct: 133 GGPVAPALPPPVGINSSSSPGSSAAGLHQRHHQPGAPAHQ 172 Score = 23.1 bits (48), Expect(2) = 8.9 Identities = 8/21 (38%), Positives = 14/21 (66%) Frame = -2 Query: 316 WSSERPRTAGQPPPWPSPSGY 254 +S P+ +PPP+ SP+G+ Sbjct: 76 FSLRSPKPEYRPPPFSSPNGH 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,203,623 Number of Sequences: 219361 Number of extensions: 2217516 Number of successful extensions: 7749 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 6978 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7691 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
