ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdl01 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ508229.2|HVU508229 Hordeum vulgare subsp. vulgare mRNA for saccharopin dehydrogenase-like protein Length = 1817 Score = 1126 bits (568), Expect = 0.0 Identities = 574/576 (99%) Strand = Plus / Minus Query: 69 ctcggtggactctcatgatctcatcccatgctgacatcctcaggtctgcactctctcgat 128 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1644 ctcggtggactctcatgatctcatcccatgctgacatcctcaggtctccactctctcgat 1585 Query: 129 cagcttgatgcccgacgcatccaagatctccagcgcagggatgtagatctccggttgcag 188 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1584 cagcttgatgcccgacgcttccaagatctccagcgcagggatgtagatctccggttgcag 1525 Query: 189 aggccggatcacgcctttcctctgaaccttgttctggagcaagagcagggctcctatcgc 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1524 aggccggatcacgcctttcctctgaaccttgttctggagcaagagcagggctcctatcgc 1465 Query: 249 tgccggtaccccgacggtgagggccatggcggtggttgacctgccgttctcggtctttcc 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1464 tgccggtaccccgacggtgagggccatggcggtggttgacctgccgttctcggtctttcc 1405 Query: 309 gaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtcggggtactccacctc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1404 gaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtcggggtactccacctc 1345 Query: 369 cacttcatggtggagcagtaccatatcctgctcattgtggccataggccattctctgttc 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1344 cacttcatggtggagcagtaccatatcctgctcattgtggccataggccattctctgttc 1285 Query: 429 cattcgttggcaaataacactgaatgcacttgaacaatccttaggaatctctgtctcctc 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 cattcgttggcaaataacactgaatgcacttgaacaatccttaggaatctctgtctcctc 1225 Query: 489 atgcagccccaagaactttatggttttgagtatcttgacagctagttccttctctttgca 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224 atgcagccccaagaactttatggttttgagtatcttgacagctagttccttctctttgca 1165 Query: 549 atgcccaagcatcattagtcttgaaatcagttcatcatcatgtcctccagtttcttcacc 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1164 atgcccaagcatcattagtcttgaaatcagttcatcatcatgtcctccagtttcttcacc 1105 Query: 609 atttacctttgtgttagatgtggatacattgttgac 644 |||||||||||||||||||||||||||||||||||| Sbjct: 1104 atttacctttgtgttagatgtggatacattgttgac 1069 Score = 109 bits (55), Expect = 1e-20 Identities = 55/55 (100%) Strand = Plus / Minus Query: 1 acttacaacagcgagaatcatcattttatttactcgctgcctctgttgcagcagc 55 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 acttacaacagcgagaatcatcattttatttactcgctgcctctgttgcagcagc 1656
>gb|BT009436.1| Triticum aestivum clone wlmk4.pk0006.c8:fis, full insert mRNA sequence Length = 2336 Score = 930 bits (469), Expect = 0.0 Identities = 538/560 (96%), Gaps = 2/560 (0%) Strand = Plus / Minus Query: 87 tctcatcccatgctgacatcctc--aggtctgcactctctcgatcagcttgatgcccgac 144 ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| | Sbjct: 2158 tctcatcccatcctgacatcctctcaggtctccactctctcgatcagcttgatgcccgcc 2099 Query: 145 gcatccaagatctccagcgcagggatgtagatctccggttgcagaggccggatcacgcct 204 || ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| Sbjct: 2098 gcttccaagatctccagcgcagggatgtagatctccggctccagaggccggatcacccct 2039 Query: 205 ttcctctgaaccttgttctggagcaagagcagggctcctatcgctgccggtaccccgacg 264 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2038 ttcctctggaccttgttctggagcaagagcagggctcctatcgctgccggtaccccgacg 1979 Query: 265 gtgagggccatggcggtggttgacctgccgttctcggtctttccgaactccagcagcgtt 324 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct: 1978 gtgagggccatggcggtggtcgacctgccattctcggtctttccgaactccagcagcgtc 1919 Query: 325 gcttggtgcttctcggtgggtcgcccgtcggggtactccacctccacttcatggtggagc 384 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1918 gcttggtgcttttcggttggtcgcccgtcggggtactccacctcgacttcatggtggagc 1859 Query: 385 agtaccatatcctgctcattgtggccataggccattctctgttccattcgttggcaaata 444 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1858 agtaccatatcctgctcattgtggccataggccattctctgttccatacgttggcaaata 1799 Query: 445 acactgaatgcacttgaacaatccttaggaatctctgtctcctcatgcagccccaagaac 504 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1798 acactgaatgcacttgaacaatccttaggaatctgtgtctcctcatgcagccccaagaac 1739 Query: 505 tttatggttttgagtatcttgacagctagttccttctctttgcaatgcccaagcatcatt 564 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1738 ttgatggttttgagtatcttgacagctagttccttttctttgcaatgcccaagcatcatg 1679 Query: 565 agtcttgaaatcagttcatcatcatgtcctccagtttcttcaccatttacctttgtgtta 624 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1678 agtcttgaaatcagttcatcgtcatgtcctccagtttcttcaccatttacctttgtgtta 1619 Query: 625 gatgtggatacattgttgac 644 |||||||||||||||||||| Sbjct: 1618 gatgtggatacattgttgac 1599 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 1 acttacaacagcgagaatcatcattttatttactcgctgcctctgttgcagcagc 55 ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2230 acttacaacggcgagaatcatcattttatttactcactgcctctgttgcagcagc 2176
>gb|DQ478935.1| Zizania latifolia lysine ketoglutarate reductase/saccharopine dehydrogenase biofunctional enzyme (LKR/SDH) mRNA, complete cds Length = 3240 Score = 373 bits (188), Expect = e-100 Identities = 416/492 (84%) Strand = Plus / Minus Query: 107 ctcaggtctgcactctctcgatcagcttgatgcccgacgcatccaagatctccagcgcag 166 ||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| ||| | Sbjct: 3150 ctcaggtctccaccctctccgccagcttgatgcccgacgactccaagatctccaacgctg 3091 Query: 167 ggatgtagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttctgga 226 | |||||||| || |||| |||||||| |||||| ||||||| ||| | ||||||||||| Sbjct: 3090 gaatgtagatttcaggttccagaggcctgatcactcctttccgctggatcttgttctgga 3031 Query: 227 gcaagagcagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttg 286 |||||||||| |||||||| ||||| |||| ||||| ||||| |||||||| ||||| | Sbjct: 3030 gcaagagcagagctcctattgctgctggtattccgacagtgagagccatggcagtggtgg 2971 Query: 287 acctgccgttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtc 346 ||||||| || || ||||||||||||||| || ||||| || ||||| |||||||||| Sbjct: 2970 acctgccattttcaacctttccgaactccagtagggttgcctgatgcttttcggtgggtc 2911 Query: 347 gcccgtcggggtactccacctccacttcatggtggagcagtaccatatcctgctcattgt 406 | || |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct: 2910 ggccatcggggtattccacctccacctcatggtgcagcagcaccatgtcctgttcattgt 2851 Query: 407 ggccataggccattctctgttccattcgttggcaaataacactgaatgcacttgaacaat 466 ||||||| |||| ||||||||||||| |||||||| ||| ||||||||||||||||| Sbjct: 2850 ggccataagccaacctctgttccattctctggcaaatcacatcgaatgcacttgaacaat 2791 Query: 467 ccttaggaatctctgtctcctcatgcagccccaagaactttatggttttgagtatcttga 526 |||||| |||||||||||||||| || ||||||||||| || ||||||| | | || | Sbjct: 2790 tcttagggatctctgtctcctcatatagtcccaagaacttgattgttttgactgttttaa 2731 Query: 527 cagctagttccttctctttgcaatgcccaagcatcattagtcttgaaatcagttcatcat 586 |||||| |||||| || ||||||||||||| ||| ||||| |||||||||||| | | Sbjct: 2730 cagctatttccttttccttgcaatgcccaaaactcaagagtctggaaatcagttcacctt 2671 Query: 587 catgtcctccag 598 | |||||||||| Sbjct: 2670 cttgtcctccag 2659
>ref|XM_468135.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1602 Score = 315 bits (159), Expect = 1e-82 Identities = 408/491 (83%) Strand = Plus / Minus Query: 108 tcaggtctgcactctctcgatcagcttgatgcccgacgcatccaagatctccagcgcagg 167 |||||||| ||||||||| ||||||||| ||||| | ||||||||||||| ||| || Sbjct: 1602 tcaggtctccactctctccgccagcttgatacccgatgactccaagatctccaacgctgg 1543 Query: 168 gatgtagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttctggag 227 ||||| || || |||| |||||||| |||||| |||||| | || | |||||||||||| Sbjct: 1542 aatgtaaatttcaggttccagaggcctgatcactcctttcttttggatcttgttctggag 1483 Query: 228 caagagcagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttga 287 ||| ||||| |||||||| ||||| |||| ||||| ||||| |||||||| ||||| | Sbjct: 1482 caacagcagagctcctattgctgctggtattccgaccgtgagagccatggcagtggtagg 1423 Query: 288 cctgccgttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcg 347 |||||| || || |||||| ||||| || || |||||||||||||| ||||| ||||| Sbjct: 1422 cctgccattttcaacctttccaaactcaagtagggttgcttggtgcttttcggttggtcg 1363 Query: 348 cccgtcggggtactccacctccacttcatggtggagcagtaccatatcctgctcattgtg 407 || || ||||| ||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1362 gccatcagggtattccacctccacctcatggtgcagcagtaccatatcctgctcattgtg 1303 Query: 408 gccataggccattctctgttccattcgttggcaaataacactgaatgcacttgaacaatc 467 | ||| ||||||||||| |||||||| |||||||| ||| |||||||||||||| | Sbjct: 1302 gatataagccattctctgctccattcgctggcaaatcacatcaaatgcacttgaacagtt 1243 Query: 468 cttaggaatctctgtctcctcatgcagccccaagaactttatggttttgagtatcttgac 527 || ||||||| ||||||||||| | ||||||||||| || ||||||| | |||| | Sbjct: 1242 ctctggaatctgtgtctcctcatataatcccaagaacttgattgttttgactgtcttagc 1183 Query: 528 agctagttccttctctttgcaatgcccaagcatcattagtcttgaaatcagttcatcatc 587 ||||| |||||| |||||||||||||||| ||| ||||| |||||||||||| |||| Sbjct: 1182 agctatttccttatctttgcaatgcccaaaactcaagagtctggaaatcagttcaccatc 1123 Query: 588 atgtcctccag 598 |||||||||| Sbjct: 1122 ttgtcctccag 1112
>gb|AF003551.2|AF003551 Zea mays lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme mRNA, complete cds Length = 3518 Score = 309 bits (156), Expect = 6e-81 Identities = 396/476 (83%) Strand = Plus / Minus Query: 112 gtctgcactctctcgatcagcttgatgcccgacgcatccaagatctccagcgcagggatg 171 |||| |||| |||| | ||||||||||||||||| ||||||||||||| || || | | Sbjct: 3356 gtctccactttctcaaccagcttgatgcccgacgactccaagatctccaatgctggaacg 3297 Query: 172 tagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttctggagcaag 231 ||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| ||||| Sbjct: 3296 tagatttccggttgcagaggcctgatcactcctttcgtctggaccttattctttagcaat 3237 Query: 232 agcagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctg 291 |||||||| ||||| ||||| || | |||||||| || |||||||| ||||| |||||| Sbjct: 3236 agcagggcccctattgctgctggaatgccgacggtcagcgccatggcagtggtggacctg 3177 Query: 292 ccgttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccg 351 || || || ||| ||||||||||| ||||| ||||||||||| |||| |||| ||||| Sbjct: 3176 ccattttcaaccttcccgaactccagtagcgtcgcttggtgcttttcggcgggttgcccg 3117 Query: 352 tcggggtactccacctccacttcatggtggagcagtaccatatcctgctcattgtggcca 411 || ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||| Sbjct: 3116 tccgggtattccacctcgacttcgtggtggagcagtaccatgtcttgctcattgtggcca 3057 Query: 412 taggccattctctgttccattcgttggcaaataacactgaatgcacttgaacaatcctta 471 |||||||| |||||||||||||| |||||||| ||| |||| || |||||| ||||| Sbjct: 3056 taggccatcctctgttccattcgctggcaaatcacatcaaatgggctcgaacaaccctta 2997 Query: 472 ggaatctctgtctcctcatgcagccccaagaactttatggttttgagtatcttgacagct 531 || || | ||||| ||||| || ||||||||||| |||||||||| | |||| |||||| Sbjct: 2996 ggtatttgagtctcttcatgtagtcccaagaacttgatggttttgactgtcttaacagct 2937 Query: 532 agttccttctctttgcaatgcccaagcatcattagtcttgaaatcagttcatcatc 587 | |||||| | ||||||| ||| ||| ||| ||||| | |||||| |||||||| Sbjct: 2936 atttccttatttttgcaacacccgagcttcaacagtctggcaatcaggtcatcatc 2881
>gb|AY110274.1| Zea mays CL1148_1 mRNA sequence Length = 3459 Score = 301 bits (152), Expect = 1e-78 Identities = 359/428 (83%) Strand = Plus / Minus Query: 112 gtctgcactctctcgatcagcttgatgcccgacgcatccaagatctccagcgcagggatg 171 |||| |||| |||| | ||||||||||||||||| ||||||||||||| || || | | Sbjct: 3356 gtctccactttctcaaccagcttgatgcccgacgactccaagatctccaatgctggaacg 3297 Query: 172 tagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttctggagcaag 231 ||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| ||||| Sbjct: 3296 tagatttccggttgcagaggcctgatcactcctttcgtctggaccttattctttagcaat 3237 Query: 232 agcagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctg 291 |||||||| ||||| ||||| || | |||||||| || |||||||| ||||| |||||| Sbjct: 3236 agcagggcccctattgctgctggaatgccgacggtcagcgccatggcagtggtggacctg 3177 Query: 292 ccgttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccg 351 || || || ||| ||||||||||| ||||| ||||||||||| |||| |||| ||||| Sbjct: 3176 ccattttcaaccttcccgaactccagtagcgtcgcttggtgcttttcggcgggttgcccg 3117 Query: 352 tcggggtactccacctccacttcatggtggagcagtaccatatcctgctcattgtggcca 411 || ||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||||| Sbjct: 3116 tccgggtattccacctcgacttcgtggtggagcagtaccatgtcttgctcattgtggcca 3057 Query: 412 taggccattctctgttccattcgttggcaaataacactgaatgcacttgaacaatcctta 471 |||||||| |||||||||||||| |||||||| ||| |||| || |||||| ||||| Sbjct: 3056 taggccatcctctgttccattcgctggcaaatcacatcaaatgggctcgaacaaccctta 2997 Query: 472 ggaatctctgtctcctcatgcagccccaagaactttatggttttgagtatcttgacagct 531 || || | ||||| ||||| || ||||||||||| |||||||||| | |||| |||||| Sbjct: 2996 ggtatttgagtctcttcatgtagtcccaagaacttgatggttttgactgtcttaacagct 2937 Query: 532 agttcctt 539 | |||||| Sbjct: 2936 atttcctt 2929
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 129 bits (65), Expect = 1e-26 Identities = 140/165 (84%) Strand = Plus / Minus Query: 234 cagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctgcc 293 |||||||||||| ||||| || | || ||||| ||||||||||| ||||| || ||||| Sbjct: 254470 cagggctcctattgctgctggaataccaacggtcagggccatggcagtggtggatctgcc 254411 Query: 294 gttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtc 353 || || ||| || |||||||||||||| ||||||||||| ||||||||| ||||||| Sbjct: 254410 attttcaaccttcccaaactccagcagcgtcgcttggtgcttttcggtgggttgcccgtc 254351 Query: 354 ggggtactccacctccacttcatggtggagcagtaccatatcctg 398 ||||| |||||||| ||||| ||||||||||||||||| ||||| Sbjct: 254350 cgggtattccacctcgacttcgtggtggagcagtaccatgtcctg 254306 Score = 67.9 bits (34), Expect = 4e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 395 cctgctcattgtggccataggccattctctgttccattcgttggcaaataacactgaatg 454 |||||||||| |||||||| ||||| |||||||||||||||| |||||| ||| |||| Sbjct: 247978 cctgctcattatggccataagccatcctctgttccattcgttagcaaatcacatcaaatg 247919 Query: 455 cacttgaacaatccttaggaat 476 ||||||||| || ||||||| Sbjct: 247918 ggcttgaacaacccgtaggaat 247897 Score = 58.0 bits (29), Expect = 4e-05 Identities = 80/97 (82%) Strand = Plus / Minus Query: 502 aactttatggttttgagtatcttgacagctagttccttctctttgcaatgcccaagcatc 561 ||||| |||||||||| | |||| ||||||| |||| | |||||||||||||| | | || Sbjct: 247682 aacttgatggttttgactgtcttaacagctatttccatatctttgcaatgccccaacttc 247623 Query: 562 attagtcttgaaatcagttcatcatcatgtcctccag 598 | ||||| | ||||| ||||||||||| ||| |||| Sbjct: 247622 agcagtctggcaatcaattcatcatcatatccaccag 247586 Score = 44.1 bits (22), Expect = 0.56 Identities = 52/62 (83%) Strand = Plus / Minus Query: 169 atgtagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttctggagc 228 |||||||| || ||||||||||||| ||||| || ||| |||| ||||| ||||| ||| Sbjct: 254631 atgtagatttctggttgcagaggccttatcactccgttcgtctggaccttattctgtagc 254572 Query: 229 aa 230 || Sbjct: 254571 aa 254570 Score = 40.1 bits (20), Expect = 8.8 Identities = 38/44 (86%) Strand = Plus / Minus Query: 117 cactctctcgatcagcttgatgcccgacgcatccaagatctcca 160 |||| |||| |||||||||||||| ||| ||||||||||||| Sbjct: 254764 cactttctcaatcagcttgatgcctaacgactccaagatctcca 254721
>gb|AF271636.1|AF271636 Zea mays lysine ketoglutarate reductase/saccharopine dehydrogenase (LKRSDH) gene, complete cds Length = 15146 Score = 121 bits (61), Expect = 3e-24 Identities = 139/165 (84%) Strand = Plus / Minus Query: 234 cagggctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctgcc 293 |||||| ||||| ||||| || | |||||||| || |||||||| ||||| |||||||| Sbjct: 13221 cagggcccctattgctgctggaatgccgacggtcagcgccatggcagtggtggacctgcc 13162 Query: 294 gttctcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtc 353 || || ||| ||||||||||| ||||| ||||||||||| |||| |||| ||||||| Sbjct: 13161 attttcaaccttcccgaactccagtagcgtcgcttggtgcttttcggcgggttgcccgtc 13102 Query: 354 ggggtactccacctccacttcatggtggagcagtaccatatcctg 398 ||||| |||||||| ||||| ||||||||||||||||| ||||| Sbjct: 13101 cgggtattccacctcgacttcgtggtggagcagtaccatgtcctg 13057 Score = 79.8 bits (40), Expect = 1e-11 Identities = 91/108 (84%) Strand = Plus / Minus Query: 397 tgctcattgtggccataggccattctctgttccattcgttggcaaataacactgaatgca 456 ||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||| Sbjct: 12668 tgctcattgtggccataggccatcctctgttccattcgctggcaaatcacatcaaatggg 12609 Query: 457 cttgaacaatccttaggaatctctgtctcctcatgcagccccaagaac 504 || |||||| ||||||| || | ||||| ||||| || ||||||||| Sbjct: 12608 ctcgaacaacccttaggtatttgagtctcttcatgtagtcccaagaac 12561 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 171 gtagatctccggttgcagaggccggatcacgcctttcctctgaaccttgttct 223 |||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| Sbjct: 13393 gtagatttccggttgcagaggcctgatcactcctttcgtctggaccttattct 13341 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 112 gtctgcactctctcgatcagcttgatgcccgacgcatccaagatctcca 160 |||| |||| |||| | ||||||||||||||||| ||||||||||||| Sbjct: 13537 gtctccactttctcaaccagcttgatgcccgacgactccaagatctcca 13489
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 113 bits (57), Expect = 7e-22 Identities = 135/161 (83%) Strand = Plus / Plus Query: 238 gctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctgccgttc 297 |||||||| ||||| |||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct: 33272198 gctcctattgctgctggtattccgaccgtgagagccatggcagtggtaggcctgccattt 33272257 Query: 298 tcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtcgggg 357 || |||||| ||||| || || |||||||||||||| ||||| ||||| || || ||| Sbjct: 33272258 tcaacctttccaaactcaagtagggttgcttggtgcttttcggttggtcggccatcaggg 33272317 Query: 358 tactccacctccacttcatggtggagcagtaccatatcctg 398 || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 33272318 tattccacctccacctcatggtgcagcagtaccatatcctg 33272358 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 395 cctgctcattgtggccataggccattctctgttccattcgttggcaaataacactgaatg 454 |||||||||||||| ||| ||||||||||| |||||||| |||||||| ||| |||| Sbjct: 33272786 cctgctcattgtggatataagccattctctgctccattcgctggcaaatcacatcaaatg 33272845 Query: 455 cacttgaacaatccttaggaatctctgtctcctcat 490 |||||||||| | || ||||||| ||||||||||| Sbjct: 33272846 cacttgaacagttctctggaatctgtgtctcctcat 33272881 Score = 65.9 bits (33), Expect = 2e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 502 aactttatggttttgagtatcttgacagctagttccttctctttgcaatgcccaagcatc 561 ||||| || ||||||| | |||| |||||| |||||| |||||||||||||||| || Sbjct: 33273347 aacttgattgttttgactgtcttagcagctatttccttatctttgcaatgcccaaaactc 33273406 Query: 562 attagtcttgaaatcagttcatcatcatgtcctccag 598 | ||||| |||||||||||| |||| |||||||||| Sbjct: 33273407 aagagtctggaaatcagttcaccatcttgtcctccag 33273443 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 181 ggttgcagaggccggatcacgcctttcctctgaaccttgttctggagcaa 230 |||| |||||||| |||||| |||||| | || | ||||||||||||||| Sbjct: 33272048 ggttccagaggcctgatcactcctttcttttggatcttgttctggagcaa 33272097 Score = 44.1 bits (22), Expect = 0.56 Identities = 46/54 (85%) Strand = Plus / Plus Query: 107 ctcaggtctgcactctctcgatcagcttgatgcccgacgcatccaagatctcca 160 ||||||||| ||||||||| ||||||||| ||||| | ||||||||||||| Sbjct: 33271878 ctcaggtctccactctctccgccagcttgatacccgatgactccaagatctcca 33271931
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_D08 Length = 163702 Score = 113 bits (57), Expect = 7e-22 Identities = 135/161 (83%) Strand = Plus / Plus Query: 238 gctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctgccgttc 297 |||||||| ||||| |||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct: 101507 gctcctattgctgctggtattccgaccgtgagagccatggcagtggtaggcctgccattt 101566 Query: 298 tcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtcgggg 357 || |||||| ||||| || || |||||||||||||| ||||| ||||| || || ||| Sbjct: 101567 tcaacctttccaaactcaagtagggttgcttggtgcttttcggttggtcggccatcaggg 101626 Query: 358 tactccacctccacttcatggtggagcagtaccatatcctg 398 || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 101627 tattccacctccacctcatggtgcagcagtaccatatcctg 101667 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 395 cctgctcattgtggccataggccattctctgttccattcgttggcaaataacactgaatg 454 |||||||||||||| ||| ||||||||||| |||||||| |||||||| ||| |||| Sbjct: 102095 cctgctcattgtggatataagccattctctgctccattcgctggcaaatcacatcaaatg 102154 Query: 455 cacttgaacaatccttaggaatctctgtctcctcat 490 |||||||||| | || ||||||| ||||||||||| Sbjct: 102155 cacttgaacagttctctggaatctgtgtctcctcat 102190 Score = 65.9 bits (33), Expect = 2e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 502 aactttatggttttgagtatcttgacagctagttccttctctttgcaatgcccaagcatc 561 ||||| || ||||||| | |||| |||||| |||||| |||||||||||||||| || Sbjct: 102656 aacttgattgttttgactgtcttagcagctatttccttatctttgcaatgcccaaaactc 102715 Query: 562 attagtcttgaaatcagttcatcatcatgtcctccag 598 | ||||| |||||||||||| |||| |||||||||| Sbjct: 102716 aagagtctggaaatcagttcaccatcttgtcctccag 102752 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 181 ggttgcagaggccggatcacgcctttcctctgaaccttgttctggagcaa 230 |||| |||||||| |||||| |||||| | || | ||||||||||||||| Sbjct: 101357 ggttccagaggcctgatcactcctttcttttggatcttgttctggagcaa 101406 Score = 44.1 bits (22), Expect = 0.56 Identities = 46/54 (85%) Strand = Plus / Plus Query: 107 ctcaggtctgcactctctcgatcagcttgatgcccgacgcatccaagatctcca 160 ||||||||| ||||||||| ||||||||| ||||| | ||||||||||||| Sbjct: 101187 ctcaggtctccactctctccgccagcttgatacccgatgactccaagatctcca 101240
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 113 bits (57), Expect = 7e-22 Identities = 135/161 (83%) Strand = Plus / Plus Query: 238 gctcctatcgctgccggtaccccgacggtgagggccatggcggtggttgacctgccgttc 297 |||||||| ||||| |||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct: 12948 gctcctattgctgctggtattccgaccgtgagagccatggcagtggtaggcctgccattt 13007 Query: 298 tcggtctttccgaactccagcagcgttgcttggtgcttctcggtgggtcgcccgtcgggg 357 || |||||| ||||| || || |||||||||||||| ||||| ||||| || || ||| Sbjct: 13008 tcaacctttccaaactcaagtagggttgcttggtgcttttcggttggtcggccatcaggg 13067 Query: 358 tactccacctccacttcatggtggagcagtaccatatcctg 398 || ||||||||||| |||||||| ||||||||||||||||| Sbjct: 13068 tattccacctccacctcatggtgcagcagtaccatatcctg 13108 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Plus Query: 395 cctgctcattgtggccataggccattctctgttccattcgttggcaaataacactgaatg 454 |||||||||||||| ||| ||||||||||| |||||||| |||||||| ||| |||| Sbjct: 13536 cctgctcattgtggatataagccattctctgctccattcgctggcaaatcacatcaaatg 13595 Query: 455 cacttgaacaatccttaggaatctctgtctcctcat 490 |||||||||| | || ||||||| ||||||||||| Sbjct: 13596 cacttgaacagttctctggaatctgtgtctcctcat 13631 Score = 65.9 bits (33), Expect = 2e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 502 aactttatggttttgagtatcttgacagctagttccttctctttgcaatgcccaagcatc 561 ||||| || ||||||| | |||| |||||| |||||| |||||||||||||||| || Sbjct: 14097 aacttgattgttttgactgtcttagcagctatttccttatctttgcaatgcccaaaactc 14156 Query: 562 attagtcttgaaatcagttcatcatcatgtcctccag 598 | ||||| |||||||||||| |||| |||||||||| Sbjct: 14157 aagagtctggaaatcagttcaccatcttgtcctccag 14193 Score = 44.1 bits (22), Expect = 0.56 Identities = 43/50 (86%) Strand = Plus / Plus Query: 181 ggttgcagaggccggatcacgcctttcctctgaaccttgttctggagcaa 230 |||| |||||||| |||||| |||||| | || | ||||||||||||||| Sbjct: 12798 ggttccagaggcctgatcactcctttcttttggatcttgttctggagcaa 12847 Score = 44.1 bits (22), Expect = 0.56 Identities = 46/54 (85%) Strand = Plus / Plus Query: 107 ctcaggtctgcactctctcgatcagcttgatgcccgacgcatccaagatctcca 160 ||||||||| ||||||||| ||||||||| ||||| | ||||||||||||| Sbjct: 12628 ctcaggtctccactctctccgccagcttgatacccgatgactccaagatctcca 12681
>gb|AC150204.30| Medicago truncatula clone mth2-69i3, complete sequence Length = 115027 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 366 ctccacttcatggtggagcagtaccatatcctgct 400 ||||||||||||||| | |||||||||||||||| Sbjct: 96231 ctccacttcatggtgcaaaagtaccatatcctgct 96197
>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence Length = 199991 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 305 ttccgaactccagcagcgttgcttggtgcttctc 338 |||||| |||| ||||||||||||||||||||| Sbjct: 97894 ttccgagctccgacagcgttgcttggtgcttctc 97927
>dbj|AK139178.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730059F07 product:unclassifiable, full insert sequence Length = 3309 Score = 44.1 bits (22), Expect = 0.56 Identities = 31/34 (91%) Strand = Plus / Plus Query: 305 ttccgaactccagcagcgttgcttggtgcttctc 338 |||||| |||| ||||||||||||||||||||| Sbjct: 2943 ttccgagctccgacagcgttgcttggtgcttctc 2976
>emb|BX649631.8| Zebrafish DNA sequence from clone CH211-186M12 in linkage group 22, complete sequence Length = 168355 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 caacagcgagaatcatcatttt 27 |||||||||||||||||||||| Sbjct: 97300 caacagcgagaatcatcatttt 97321
>emb|BX537168.4| Zebrafish DNA sequence from clone DKEY-105O6 in linkage group 4, complete sequence Length = 200744 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 287 acctgccgttctcggtctttcc 308 |||||||||||||||||||||| Sbjct: 87827 acctgccgttctcggtctttcc 87806
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 122 tctcgatcagcttgatgcccgacgc 146 ||||||||||| ||||||||||||| Sbjct: 61977 tctcgatcagcatgatgcccgacgc 61953
>emb|BX511222.10| Zebrafish DNA sequence from clone DKEY-250J7 in linkage group 18, complete sequence Length = 151023 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 acttacaacagcgagaatcat 21 ||||||||||||||||||||| Sbjct: 19097 acttacaacagcgagaatcat 19117
>emb|BX321919.10| Zebrafish DNA sequence from clone CH211-236B8, complete sequence Length = 163495 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 acttacaacagcgagaatcat 21 ||||||||||||||||||||| Sbjct: 150687 acttacaacagcgagaatcat 150707
>gb|DQ016668.1| Helianthus annuus putative germacrene synthase 2 mRNA, complete cds Length = 1944 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 512 ttttgagtatcttgacagcta 532 ||||||||||||||||||||| Sbjct: 1506 ttttgagtatcttgacagcta 1486
>gb|AC022224.22|AC022224 Homo sapiens 12p BAC RP11-248B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109491 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 aatcatcattttatttactcg 36 ||||||||||||||||||||| Sbjct: 26839 aatcatcattttatttactcg 26859
>ref|NM_190623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1665 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtactccacctccacttcat 376 |||||||||||||||||||| Sbjct: 642 gtactccacctccacttcat 623
>gb|AC010848.14| Drosophila melanogaster clone BACR20N11, complete sequence Length = 175978 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ctcgctgcctctgttgcagc 52 |||||||||||||||||||| Sbjct: 140540 ctcgctgcctctgttgcagc 140559
>ref|NM_017580.1| Homo sapiens zinc finger, RAN-binding domain containing 1 (ZRANB1), mRNA Length = 2710 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tctctgtctcctcatgcagc 495 |||||||||||||||||||| Sbjct: 2685 tctctgtctcctcatgcagc 2666
>gb|AC117810.8| Mus musculus chromosome 18, clone RP24-571D2, complete sequence Length = 207527 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgtgttagatgtggatacat 637 |||||||||||||||||||| Sbjct: 94528 tgtgttagatgtggatacat 94509
>gb|AY347786.1| Malus x domestica clone 33-6 transducin-like mRNA, partial cds Length = 234 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 caagaactttatggttttga 517 |||||||||||||||||||| Sbjct: 72 caagaactttatggttttga 91
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 tcgatcagcttgatgcccga 143 |||||||||||||||||||| Sbjct: 656914 tcgatcagcttgatgcccga 656895
>emb|AL137069.15| Human DNA sequence from clone RP11-167C5 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 171852 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 aaataacactgaatgcactt 459 |||||||||||||||||||| Sbjct: 128987 aaataacactgaatgcactt 128968
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tctcgatcagcttgatgccc 141 |||||||||||||||||||| Sbjct: 4064785 tctcgatcagcttgatgccc 4064804
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 513 tttgagtatcttgacagctagttc 536 ||||||||| |||||||||||||| Sbjct: 134556 tttgagtattttgacagctagttc 134579
>emb|AL033545.2|ATF7K2 Arabidopsis thaliana DNA chromosome 4, BAC clone F7K2 (ESSA project) Length = 106702 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 513 tttgagtatcttgacagctagttc 536 ||||||||| |||||||||||||| Sbjct: 85748 tttgagtattttgacagctagttc 85771
>emb|BX324125.5| Zebrafish DNA sequence from clone DKEY-185M11, complete sequence Length = 196525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 gagaatcatcattttattta 32 |||||||||||||||||||| Sbjct: 195079 gagaatcatcattttattta 195098
>emb|CR858818.1| Pongo pygmaeus mRNA; cDNA DKFZp470P094 (from clone DKFZp470P094) Length = 2854 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tcggggtactccacctccac 371 |||||||||||||||||||| Sbjct: 1450 tcggggtactccacctccac 1431
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 ggcggtggttgacctgccgttctc 299 |||||| ||||||||||||||||| Sbjct: 1271370 ggcggtagttgacctgccgttctc 1271393
>gb|AC104444.2| Homo sapiens chromosome 3 clone RP11-420K5, complete sequence Length = 161054 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 agaactttatggttttgagt 519 |||||||||||||||||||| Sbjct: 59120 agaactttatggttttgagt 59139
>gb|AC090625.5| Homo sapiens chromosome 11, clone RP4-683L5, complete sequence Length = 142522 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 agttcatcatcatgtcctcc 596 |||||||||||||||||||| Sbjct: 108849 agttcatcatcatgtcctcc 108830
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtactccacctccacttcat 376 |||||||||||||||||||| Sbjct: 36628828 gtactccacctccacttcat 36628809
>gb|AC154717.2| Mus musculus BAC clone RP24-369E16 from chromosome 17, complete sequence Length = 159625 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 539 tctctttgcaatgcccaagc 558 |||||||||||||||||||| Sbjct: 84277 tctctttgcaatgcccaagc 84258
>gb|AC154187.2| Mus musculus BAC clone RP24-444N2 from chromosome 17, complete sequence Length = 224908 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 tctctttgcaatgcccaagc 558 |||||||||||||||||||| Sbjct: 195296 tctctttgcaatgcccaagc 195315
>gb|AC138391.2| Homo sapiens chromosome 3 clone RP11-167C9, complete sequence Length = 184254 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acctccacttcatggtggag 383 |||||||||||||||||||| Sbjct: 134017 acctccacttcatggtggag 133998
>gb|AC092058.3| Homo sapiens chromosome 3 clone RP11-667E17, complete sequence Length = 200898 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 agaactttatggttttgagt 519 |||||||||||||||||||| Sbjct: 16308 agaactttatggttttgagt 16289
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtactccacctccacttcat 376 |||||||||||||||||||| Sbjct: 102094 gtactccacctccacttcat 102075
>emb|AJ252060.1|HSA252060 Homo sapiens mRNA for TRABID protein (TRABID gene) Length = 2745 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 476 tctctgtctcctcatgcagc 495 |||||||||||||||||||| Sbjct: 2720 tctctgtctcctcatgcagc 2701
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 gcacttgaacaatccttagg 473 |||||||||||||||||||| Sbjct: 2594282 gcacttgaacaatccttagg 2594301
>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete sequence Length = 315815 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ctcgctgcctctgttgcagc 52 |||||||||||||||||||| Sbjct: 68644 ctcgctgcctctgttgcagc 68663 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,451,847 Number of Sequences: 3902068 Number of extensions: 5451847 Number of successful extensions: 111178 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110937 Number of HSP's gapped (non-prelim): 232 length of query: 644 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 621 effective length of database: 17,143,297,704 effective search space: 10645987874184 effective search space used: 10645987874184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
