ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdk20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain... 32 1.6
2CCNT_DROME (O96433) Cyclin-T 32 1.6

>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 26/70 (37%), Positives = 32/70 (45%)
 Frame = -1

Query: 762 SARGPSIHPRRASSSGETSAPLAASTRSRQQWRGIASMPXXXXXSA*WQPPLSTNRPPLA 583
           +A GPS   RR+ S+G  +APLAAST S    +G +                ST   P  
Sbjct: 373 TAPGPS---RRSWSAGPVTAPLAASTASFSAVKGASETTTKGT---------STELAPAT 420

Query: 582 GA*PPSRSLR 553
           G   PSR LR
Sbjct: 421 GPEEPSRFLR 430



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>CCNT_DROME (O96433) Cyclin-T|
          Length = 1097

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 10/119 (8%)
 Frame = -1

Query: 756 RGPSIHPRRASS----SGETSAPLAASTRSRQQWRGIASMPXXXXXSA*WQPPLSTNRPP 589
           R PS H R +SS    SG  S   ++S+ S  Q  G  SMP     S+   PP+    PP
Sbjct: 418 RMPSSHQRSSSSGLGSSGSGSQRSSSSSSSSSQQPGRPSMPVDYHKSSRGMPPVGVGMPP 477

Query: 588 ------LAGA*PPSRSLRTWSRNPNQSKCPNLCRNQNLSRTQNWIPNLCPNQCRSRSQN 430
                  +G+ P     +        +   +   +++ S++    PN  P    S  QN
Sbjct: 478 HGSHKMTSGSKPQQPQQQPVPHPSASNSSASGMSSKDKSQSNKMYPNAPPPYSNSAPQN 536


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,837,290
Number of Sequences: 219361
Number of extensions: 1288648
Number of successful extensions: 3238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8071525748
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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