ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdk19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC... 357 9e-96
2emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(E... 345 4e-92
3emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-gluc... 329 2e-87
4emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA,... 137 2e-29
5emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS 137 2e-29
6emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 88 1e-14
7gb|AY109289.1| Zea mays PCO135820 mRNA sequence 86 5e-14
8gb|AY768944.1| Oryza sativa (japonica cultivar-group) endo-1,3;1... 80 3e-12
9gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome... 80 3e-12
10emb|X58877.1|OSGNS1 Oryza sativa gns1 gene for beta-glucanase 80 3e-12
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 80 3e-12
12gb|AF323610.1|AF323610 Oryza sativa glucanase (GLU) mRNA, comple... 80 3e-12
13dbj|AK121825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 3e-12
14dbj|AK060867.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 3e-12
15ref|XM_475161.1| Oryza sativa (japonica cultivar-group), predic... 76 5e-11
16gb|M62740.1|BLYGLB2 Hordeum vulgare 1,3-1,4-beta-D glucan 4-gluc... 70 3e-09
17gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, comp... 42 0.71
18emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 42 0.71
19ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal ... 40 2.8 
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
          Length = 6260

 Score =  357 bits (180), Expect = 9e-96
 Identities = 204/216 (94%)
 Strand = Plus / Minus

                                                                        
Query: 4    gccactactactcgcgtacncatctnagctgcctcagcggtcgcatcccaagttccnaac 63
            ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct: 5635 gccactactactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttcccaac 5576

                                                                        
Query: 64   ccaanccntgnacaatacataatgtgcgcatacgtacggngtacacgctcttatacgcnc 123
            |||| || || |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 5575 ccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgcgc 5516

                                                                        
Query: 124  gcgcgtacgtacggacatacnggcactaggtagctgctacctcatcanaagctgatggng 183
            |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct: 5515 gcgcgtacgtacggacatacgggcactaggtagctgctacctcatcagaagctgatgggg 5456

                                                
Query: 184  tagacgtgctgcatgttgnggtagaagagcccccag 219
            |||||||||||||||||| |||||||||||||||||
Sbjct: 5455 tagacgtgctgcatgttggggtagaagagcccccag 5420
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>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
          Length = 4643

 Score =  345 bits (174), Expect = 4e-92
 Identities = 198/210 (94%)
 Strand = Plus / Minus

                                                                        
Query: 10   actactcgcgtacncatctnagctgcctcagcggtcgcatcccaagttccnaacccaanc 69
            ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct: 4222 actactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttcccaacccaagc 4163

                                                                        
Query: 70   cntgnacaatacataatgtgcgcatacgtacggngtacacgctcttatacgcncgcgcgt 129
            | || |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 4162 cctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgt 4103

                                                                        
Query: 130  acgtacggacatacnggcactaggtagctgctacctcatcanaagctgatggngtagacg 189
            |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 4102 acgtacggacatacgggcactaggtagctgctacctcatcagaagctgatggggtagacg 4043

                                          
Query: 190  tgctgcatgttgnggtagaagagcccccag 219
            |||||||||||| |||||||||||||||||
Sbjct: 4042 tgctgcatgttggggtagaagagcccccag 4013
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>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
          Length = 4849

 Score =  329 bits (166), Expect = 2e-87
 Identities = 197/210 (93%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                        
Query: 10   actactcgcgtacncatctnagctgcctcagcggtcgcatcccaagttccnaacccaanc 69
            |||||||||||||  |||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct: 4621 actactcgcgtacg-atctgagctgcctcagcggtcgcatcccaagttcccaacccaagc 4563

                                                                        
Query: 70   cntgnacaatacataatgtgcgcatacgtacggngtacacgctcttatacgcncgcgcgt 129
            | || |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 4562 cctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgcgcgcgcgt 4503

                                                                        
Query: 130  acgtacggacatacnggcactaggtagctgctacctcatcanaagctgatggngtagacg 189
            |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 4502 acgtacggacatacgggcactaggtagctgctacctcatcagaagctgatggggtagacg 4443

                                          
Query: 190  tgctgcatgttgnggtagaagagcccccag 219
            |||||||||||| |||||||||||||||||
Sbjct: 4442 tgctgcatgttggggtagaagagcccccag 4413
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>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS
          Length = 1426

 Score =  137 bits (69), Expect = 2e-29
 Identities = 175/216 (81%), Gaps = 21/216 (9%)
 Strand = Plus / Minus

                                                                        
Query: 17   gcgtacncatctnagctgcctcagcggtcgcatcccaagttccnaacccaanccntgnac 76
            |||||| ||||| ||||||||||||||||||| |||||        ||||| || || ||
Sbjct: 1211 gcgtacgcatctgagctgcctcagcggtcgcaccccaa--------cccaaaccctgtac 1160

                                                                        
Query: 77   aatacataatgtgcgcatacgtacggngtacacgctcttatacgcn------cgcgcgta 130
            |||||||||||||| ||||||||| |  |||||||||||||||||       ||||||||
Sbjct: 1159 aatacataatgtgcacatacgtaccgcatacacgctcttatacgcgtgtacgcgcgcgta 1100

                                                                        
Query: 131  cgtacggacatacnggcactaggta-------gctgctacctcatcanaagctgatggng 183
            ||||||||||||| | |||||| ||       || |||| ||||||| |||||||||| |
Sbjct: 1099 cgtacggacatacggacactagctacgcatacgcagctagctcatcagaagctgatgggg 1040

                                                
Query: 184  tagacgtgctgcatgttgnggtagaagagcccccag 219
            |||||||||||||||||| |||||||||| ||||||
Sbjct: 1039 tagacgtgctgcatgttggggtagaagagtccccag 1004
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>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS
          Length = 1434

 Score =  137 bits (69), Expect = 2e-29
 Identities = 185/228 (81%), Gaps = 22/228 (9%)
 Strand = Plus / Minus

                                                                        
Query: 5    ccactactactcgcgtacncatctnagctgcctcagcggtcgcatcccaagttccnaacc 64
            ||||||||| |||||||| | ||| ||||||||||||||||||| |||||        ||
Sbjct: 1208 ccactacta-tcgcgtacgcgtctgagctgcctcagcggtcgcaccccaa--------cc 1158

                                                                        
Query: 65   caanccntgnacaatacataatgtgcgcatacgtacggngtacacgctcttatacgcn-- 122
            ||| || || |||||||||||||||| |||||||||||  |||||||||||||||||   
Sbjct: 1157 caagccctgtacaatacataatgtgcacatacgtacggcatacacgctcttatacgcgtg 1098

                                                                        
Query: 123  ----cgcgcgtacgtacggacatacnggcactaggta-------gctgctacctcatcan 171
                |||||||||| |||||||||| | |||||| ||       || |||| ||||||| 
Sbjct: 1097 tacgcgcgcgtacggacggacatacggacactagctacgcatacgcagctagctcatcag 1038

                                                            
Query: 172  aagctgatggngtagacgtgctgcatgttgnggtagaagagcccccag 219
            |||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 1037 aagctgatggggtagacgtgctgcatgttggggtagaagagtccccag 990
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>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                 
Query: 167  atcanaagctgatggngtagacgtgctgcatgttgnggtagaagagcccccag 219
            |||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 1033 atcagaagctgatggggtagacgtgctgcatgttggggtagaagagcccccag 981



 Score = 46.1 bits (23), Expect = 0.045
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                      
Query: 80   acataatgtgcgcatacgtacggngtacacgctcttatacgc 121
            ||||||||||| ||||||||| | |||||||| |||||||||
Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099
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>gb|AY109289.1| Zea mays PCO135820 mRNA sequence
          Length = 976

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                               
Query: 168 tcanaagctgatggngtagacgtgctgcatgttgnggtagaagagcccccag 219
           ||| |||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 482 tcagaagctgatggggtagacgtgctgcatgttggggtagaagagcccccag 431
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>gb|AY768944.1| Oryza sativa (japonica cultivar-group) endo-1,3;1,4-beta-glucanase
            mRNA, complete cds
          Length = 1579

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 166  catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 1118 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 1066
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>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12,
             complete sequence
          Length = 121293

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                  
Query: 166   catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
             ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 93193 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 93245
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>emb|X58877.1|OSGNS1 Oryza sativa gns1 gene for beta-glucanase
          Length = 6614

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 166  catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 5440 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 5388
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                     
Query: 166      catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
                ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 17962444 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 17962496
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>gb|AF323610.1|AF323610 Oryza sativa glucanase (GLU) mRNA, complete cds
          Length = 1573

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 166  catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 1104 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 1052
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>dbj|AK121825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099G01, full
            insert sequence
          Length = 1606

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 166  catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 1138 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 1086
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>dbj|AK060867.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H03, full
            insert sequence
          Length = 1565

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                 
Query: 166  catcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 1134 catcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 1082
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>ref|XM_475161.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1005

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 168  tcanaagctgatggngtagacgtgctgcatgttgnggtagaagagccccca 218
            ||| |||||||||| ||||||||||||||||||| |||||||||| |||||
Sbjct: 1005 tcagaagctgatggggtagacgtgctgcatgttggggtagaagaggcccca 955
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>gb|M62740.1|BLYGLB2 Hordeum vulgare 1,3-1,4-beta-D glucan 4-glucanohydrolase (Glb 2)
            gene, intron 1
          Length = 5159

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 168  tcanaagctgatggngtagacgtgctgcatgttgnggtagaagagcccccag 219
            ||| ||| |||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 4992 tcagaagttgatggggtagacgtgctgcatgttggggtagaagagtccccag 4941
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>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence
          Length = 181063

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    caatacataatgtgcgcatac 96
             |||||||||||||||||||||
Sbjct: 45217 caatacataatgtgcgcatac 45237
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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
              sequence
          Length = 182054

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     caatacataatgtgcgcatac 96
              |||||||||||||||||||||
Sbjct: 176184 caatacataatgtgcgcatac 176164
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>ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog
           2 (LOC360661), mRNA
          Length = 8565

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  agctgcctcagcggtcgcat 49
           ||||||||||||||||||||
Sbjct: 773 agctgcctcagcggtcgcat 792


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 436,244
Number of Sequences: 3902068
Number of extensions: 436244
Number of successful extensions: 22371
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22334
Number of HSP's gapped (non-prelim): 36
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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