>ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-binding|
           subunit (ERF2) (Translation release factor 3)
           (Polypeptide release factor 3) (ERF3) (ERF-3)
          Length = 712

 Score = 33.5 bits (75), Expect = 0.65
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = -3

Query: 591 DQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTY------LKSASISASKCVVV 430
           D+E SAEP+A    +P     +P       +P  +   +        KSA +SAS  VV 
Sbjct: 204 DEEASAEPEAKKESTPVPASSSPAPAAADSTPAPVKKESTPTPSVASKSAPVSASASVVT 263

Query: 429 NPNKQPEYDDAISEETEGAVDGLSEKVS 346
                 E +D + EE    + G  + VS
Sbjct: 264 ADALAKEQEDEVDEEVVKDMFGGKDHVS 291

>CWC22_SCHPO (Q9P6R9) Pre-mRNA-splicing factor cwc22 (Complexed with cdc5|
           protein 22) (Cell cycle control protein cwf22)
          Length = 834

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 666 QRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSL 487
           ++K+ ++  + +G  +D  NE+   D E ++E +   +V+ +KPQ    + Q   S  +L
Sbjct: 356 EKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQ---VIDQTNASLVNL 412

Query: 486 SSRTYLK-SASISASKC 439
               YL   +S+   +C
Sbjct: 413 RKSIYLTIMSSVDFEEC 429

>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)|
          Length = 2158

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = -3

Query: 594  SDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQ 415
            +D E SA+  A   V  +KP DA  +   GLSP S       +  S S  K + ++  K 
Sbjct: 1377 TDGERSAKKPA---VQKKKPGDASSLPDAGLSPGS-------QVDSKSTFKRLFLHKTKD 1426

Query: 414  PEYDDAISEETEGAVDG-LSEKVSKMHA*CSADDGSRHR 301
             +Y    +EE E AV G +  + + M     A  G +HR
Sbjct: 1427 KKYSLEGAEELENAVSGHVVLEATTMKKGLEAPSGQQHR 1465

>MAGB6_HUMAN (Q8N7X4) Melanoma-associated antigen B6 (MAGE-B6 antigen)|
          Length = 407

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)
 Frame = -3

Query: 675 SPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQK------PQDAPGVG 514
           SP   + AS+P++  GAS  G+ +  +S  +     +     SP        PQ++ G  
Sbjct: 93  SPSTSRDASVPQESQGASPTGSPDAGVSGSKYDVAANGQDEKSPSTSHDVSVPQESQGAS 152

Query: 513 QNGLSPTSLSSRTYLKSA------SISASKCVVVNPNKQPEYDDAISEETEGAVDGLSEK 352
             G     +S   Y  +A      S+SAS+  ++         DA+ ++       L +K
Sbjct: 153 PTGSPDAGVSGSKYDVAAEGEDEESVSASQKAIIFKRLS---KDAVKKKACTLAQFLQKK 209

Query: 351 VSKMHA*CSAD 319
             K  +   AD
Sbjct: 210 FEKKESILKAD 220

>V70K_EPMV (P20129) 70 kDa protein|
          Length = 649

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -3

Query: 672 PLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPT 493
           P    H++  R    A++  N+E           P     + P  P   P      LSP+
Sbjct: 487 PPHSPHSAQDRASALATDVSNSETKNCPSPTVPPPFLPNHLHPLLPGTDPPTTPRQLSPS 546

Query: 492 --SLSSRTYLKSASISASKCVVVNPNKQP 412
             SLS RT+L SA IS     V+ P+  P
Sbjct: 547 PSSLSLRTFLDSAVISCDSSPVLPPSPSP 575

>SAC3_YEAST (P46674) Leucine permease transcriptional regulator|
          Length = 1301

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 20/77 (25%), Positives = 33/77 (42%)
 Frame = -3

Query: 609 NEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVV 430
           ++ H         P  HG +S QK Q    V   G SP         +++++ ASK  ++
Sbjct: 624 SQSHTLSTNPLLTPQVHGDLSEQKQQQIKTVTDGG-SPFVFDQSA--QNSTVEASKAHMI 680

Query: 429 NPNKQPEYDDAISEETE 379
           +      YD+ +S E E
Sbjct: 681 STTSNGAYDEKLSSEQE 697

>SIR3_YEAST (P06701) Regulatory protein SIR3 (Silent information regulator 3)|
          Length = 977

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
 Frame = -3

Query: 684 ERGSPLQRKHASLPRQRVGASNDGN-NEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQN 508
           ER S    K  S+ + ++  S D + N  +I  Q  ++    HG++SPQ+   +P +  +
Sbjct: 230 ERSSKRLAKKPSMKKIKIEPSADDDVNNGNIPSQRGTST--THGSISPQEESVSPNI--S 285

Query: 507 GLSPTSLSSRT----YLKSASIS----ASKCVVVNPNKQPEYDDAISEET 382
             SP++L+S T     L+  SIS     S+ + +N ++Q E D   + ET
Sbjct: 286 SASPSALTSPTDSSKILQKRSISKELIVSEEIPINSSEQ-ESDYEPNNET 334

>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4|
            (Immediate-early protein IE175)
          Length = 1415

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = -3

Query: 699  HYSKGERGSPLQRKH-------ASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQ 541
            H S  ++ S L+RK        +S  R+R   S+  ++   +S +  SA       +   
Sbjct: 828  HPSAMDQSSSLERKTLYTGPAVSSKERRRSAQSSTPSDIGGVSRKRKSAPEQYKQGLQTP 887

Query: 540  KPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQPEYDDAIS 391
             P   P VGQ  L PT+ ++   L S+  + S     +P+K+P +    S
Sbjct: 888  LPMPEPSVGQTLLDPTT-TTHDILSSSLPNRSCSSSPSPSKRPYHPSCYS 936

>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)|
           (Thousand and one amino acid protein 2)
          Length = 1235

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
 Frame = -3

Query: 570 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISAS-------KCVVVNPNKQP 412
           P+  GA +P++ ++A        + TSL S   + S SISAS            + N++ 
Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASSQSSSVNSLADASDNEEE 380

Query: 411 EYDDAISEETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 271
           E ++   EE E      S +++ M       +G     SH   +HR+
Sbjct: 381 EEEEEEEEEEEEEEGPESREMAMM------QEGEHTVTSHSSIIHRL 421

>TAOK2_HUMAN (Q9UL54) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)|
           (Thousand and one amino acid protein 2)
           (Prostate-derived STE20-like kinase 1) (PSK-1) (Kinase
           from chicken homolog C) (hKFC-C)
          Length = 1235

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 26/100 (26%), Positives = 42/100 (42%)
 Frame = -3

Query: 570 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQPEYDDAIS 391
           P+  GA +P++ ++A        + TSL S   + S SISAS     + N   +  D   
Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASS-QSSSVNSLADASDNEE 379

Query: 390 EETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 271
           EE E   +   E+  +        +G     SH   +HR+
Sbjct: 380 EEEEEEEEEEEEEGPEAREMAMMQEGEHTVTSHSSIIHRL 419

>STAU2_MOUSE (Q8CJ67) Double-stranded RNA-binding protein Staufen homolog 2|
          Length = 570

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = -3

Query: 675 SPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQ---NG 505
           SP   +     R RV     G    ++S ++M+    +  +VSP     A    +   NG
Sbjct: 416 SPDVYQEMEASRHRV---TSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNG 472

Query: 504 LSPTSLSSRTYLKSASISASKCVVVNPNKQPEY 406
            SPT+      LK +S   S C  V P+KQ EY
Sbjct: 473 TSPTA--EAIGLKGSS-PTSPCSSVQPSKQLEY 502

>ARRC_RANCA (P51481) Arrestin-C (Cone arrestin)|
          Length = 389

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = +3

Query: 24  ECSTAKQDSVQMSCSVRYNHA*MICVGTNPGVTSVILSVKIHQPMQGNSSC---VQQRCL 194
           E    K+  V M+C+ RY    M  +G +      + S ++H P+ G       +Q++  
Sbjct: 45  EYQKEKKVFVMMTCAFRYGRDDMELIGLSFRKDIYVQSCQVHPPLPGEKKALTPLQEKLK 104

Query: 195 A--GSHTR*TISNLYAVLP*DRTALLSASGVPDGNEKCGADF 314
           A  G ++     N+   LP    ++    G  D  + CG DF
Sbjct: 105 AKLGGNSFPFSFNMATNLP---CSVTLQPGPEDSGKACGVDF 143

>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP coiled-coil|
           transcription activator 2)
          Length = 935

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
 Frame = -3

Query: 702 EHYSKGERGSPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAP 523
           +H   G   SP   +H SLP           N  +       A+ + HG  SP   Q   
Sbjct: 634 QHSPLGGLKSP---QHISLP--------PSPNNHYFLASSSGAQRENHGVSSPSSSQGCA 682

Query: 522 GVGQNGLSPTSLSSRTY-LKSASISASKCVVVNPNKQPEYDDAISEE 385
            +   GL  +     T+ + S + S S   V +  + P Y+DA+ ++
Sbjct: 683 QM--TGLQSSDKVGPTFSIPSPTFSKSSSAVSDITQPPSYEDAVKQQ 727

>BCL6_MOUSE (P41183) B-cell lymphoma 6 protein homolog|
          Length = 707

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 16/129 (12%)
 Frame = -1

Query: 455 LVLPSVSLSTRINSQSMTMRSLRKRKGPS--TDYPRRSPRCMPSAAP-----MTEVGTAF 297
           LV  S++ S R +S+S +   +   K  S  +  P+ +  C+ +A P     M E  + +
Sbjct: 450 LVNRSLAGSPRSSSESHSPLYMHPPKCTSCGSQSPQHTEMCLHTAGPTFPEEMGETQSEY 509

Query: 296 LISVRYTG--------C**QSSAVLGKHCIQV-GDCLASV*SCQASLLHAGTVALHGLMY 144
             S    G        C     A L +H +Q   D       CQAS  + G +A H  ++
Sbjct: 510 SDSSCENGTFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVH 569

Query: 143 FYTQDYRCN 117
              + YRCN
Sbjct: 570 TGEKPYRCN 578


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,473,259
Number of Sequences: 219361
Number of extensions: 2177860
Number of successful extensions: 6488
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6475
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)