Clone Name | rbasdk06 |
---|---|
Clone Library Name | barley_pub |
>ERF2_CANMA (Q9HGI7) Eukaryotic peptide chain release factor GTP-binding| subunit (ERF2) (Translation release factor 3) (Polypeptide release factor 3) (ERF3) (ERF-3) Length = 712 Score = 33.5 bits (75), Expect = 0.65 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Frame = -3 Query: 591 DQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTY------LKSASISASKCVVV 430 D+E SAEP+A +P +P +P + + KSA +SAS VV Sbjct: 204 DEEASAEPEAKKESTPVPASSSPAPAAADSTPAPVKKESTPTPSVASKSAPVSASASVVT 263 Query: 429 NPNKQPEYDDAISEETEGAVDGLSEKVS 346 E +D + EE + G + VS Sbjct: 264 ADALAKEQEDEVDEEVVKDMFGGKDHVS 291
>CWC22_SCHPO (Q9P6R9) Pre-mRNA-splicing factor cwc22 (Complexed with cdc5| protein 22) (Cell cycle control protein cwf22) Length = 834 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = -3 Query: 666 QRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSL 487 ++K+ ++ + +G +D NE+ D E ++E + +V+ +KPQ + Q S +L Sbjct: 356 EKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQ---VIDQTNASLVNL 412 Query: 486 SSRTYLK-SASISASKC 439 YL +S+ +C Sbjct: 413 RKSIYLTIMSSVDFEEC 429
>MYO9B_HUMAN (Q13459) Myosin-9B (Myosin IXb) (Unconventional myosin-9b)| Length = 2158 Score = 32.3 bits (72), Expect = 1.5 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Frame = -3 Query: 594 SDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQ 415 +D E SA+ A V +KP DA + GLSP S + S S K + ++ K Sbjct: 1377 TDGERSAKKPA---VQKKKPGDASSLPDAGLSPGS-------QVDSKSTFKRLFLHKTKD 1426 Query: 414 PEYDDAISEETEGAVDG-LSEKVSKMHA*CSADDGSRHR 301 +Y +EE E AV G + + + M A G +HR Sbjct: 1427 KKYSLEGAEELENAVSGHVVLEATTMKKGLEAPSGQQHR 1465
>MAGB6_HUMAN (Q8N7X4) Melanoma-associated antigen B6 (MAGE-B6 antigen)| Length = 407 Score = 32.3 bits (72), Expect = 1.5 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%) Frame = -3 Query: 675 SPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQK------PQDAPGVG 514 SP + AS+P++ GAS G+ + +S + + SP PQ++ G Sbjct: 93 SPSTSRDASVPQESQGASPTGSPDAGVSGSKYDVAANGQDEKSPSTSHDVSVPQESQGAS 152 Query: 513 QNGLSPTSLSSRTYLKSA------SISASKCVVVNPNKQPEYDDAISEETEGAVDGLSEK 352 G +S Y +A S+SAS+ ++ DA+ ++ L +K Sbjct: 153 PTGSPDAGVSGSKYDVAAEGEDEESVSASQKAIIFKRLS---KDAVKKKACTLAQFLQKK 209 Query: 351 VSKMHA*CSAD 319 K + AD Sbjct: 210 FEKKESILKAD 220
>V70K_EPMV (P20129) 70 kDa protein| Length = 649 Score = 32.0 bits (71), Expect = 1.9 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Frame = -3 Query: 672 PLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPT 493 P H++ R A++ N+E P + P P P LSP+ Sbjct: 487 PPHSPHSAQDRASALATDVSNSETKNCPSPTVPPPFLPNHLHPLLPGTDPPTTPRQLSPS 546 Query: 492 --SLSSRTYLKSASISASKCVVVNPNKQP 412 SLS RT+L SA IS V+ P+ P Sbjct: 547 PSSLSLRTFLDSAVISCDSSPVLPPSPSP 575
>SAC3_YEAST (P46674) Leucine permease transcriptional regulator| Length = 1301 Score = 31.6 bits (70), Expect = 2.5 Identities = 20/77 (25%), Positives = 33/77 (42%) Frame = -3 Query: 609 NEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVV 430 ++ H P HG +S QK Q V G SP +++++ ASK ++ Sbjct: 624 SQSHTLSTNPLLTPQVHGDLSEQKQQQIKTVTDGG-SPFVFDQSA--QNSTVEASKAHMI 680 Query: 429 NPNKQPEYDDAISEETE 379 + YD+ +S E E Sbjct: 681 STTSNGAYDEKLSSEQE 697
>SIR3_YEAST (P06701) Regulatory protein SIR3 (Silent information regulator 3)| Length = 977 Score = 30.8 bits (68), Expect = 4.2 Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 9/110 (8%) Frame = -3 Query: 684 ERGSPLQRKHASLPRQRVGASNDGN-NEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQN 508 ER S K S+ + ++ S D + N +I Q ++ HG++SPQ+ +P + + Sbjct: 230 ERSSKRLAKKPSMKKIKIEPSADDDVNNGNIPSQRGTST--THGSISPQEESVSPNI--S 285 Query: 507 GLSPTSLSSRT----YLKSASIS----ASKCVVVNPNKQPEYDDAISEET 382 SP++L+S T L+ SIS S+ + +N ++Q E D + ET Sbjct: 286 SASPSALTSPTDSSKILQKRSISKELIVSEEIPINSSEQ-ESDYEPNNET 334
>ICP4_GAHVG (Q02362) Trans-acting transcriptional activator protein ICP4| (Immediate-early protein IE175) Length = 1415 Score = 30.4 bits (67), Expect = 5.5 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = -3 Query: 699 HYSKGERGSPLQRKH-------ASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQ 541 H S ++ S L+RK +S R+R S+ ++ +S + SA + Sbjct: 828 HPSAMDQSSSLERKTLYTGPAVSSKERRRSAQSSTPSDIGGVSRKRKSAPEQYKQGLQTP 887 Query: 540 KPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQPEYDDAIS 391 P P VGQ L PT+ ++ L S+ + S +P+K+P + S Sbjct: 888 LPMPEPSVGQTLLDPTT-TTHDILSSSLPNRSCSSSPSPSKRPYHPSCYS 936
>TAOK2_RAT (Q9JLS3) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)| (Thousand and one amino acid protein 2) Length = 1235 Score = 30.0 bits (66), Expect = 7.2 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 7/107 (6%) Frame = -3 Query: 570 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISAS-------KCVVVNPNKQP 412 P+ GA +P++ ++A + TSL S + S SISAS + N++ Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASSQSSSVNSLADASDNEEE 380 Query: 411 EYDDAISEETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 271 E ++ EE E S +++ M +G SH +HR+ Sbjct: 381 EEEEEEEEEEEEEEGPESREMAMM------QEGEHTVTSHSSIIHRL 421
>TAOK2_HUMAN (Q9UL54) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1)| (Thousand and one amino acid protein 2) (Prostate-derived STE20-like kinase 1) (PSK-1) (Kinase from chicken homolog C) (hKFC-C) Length = 1235 Score = 30.0 bits (66), Expect = 7.2 Identities = 26/100 (26%), Positives = 42/100 (42%) Frame = -3 Query: 570 PDAHGAVSPQKPQDAPGVGQNGLSPTSLSSRTYLKSASISASKCVVVNPNKQPEYDDAIS 391 P+ GA +P++ ++A + TSL S + S SISAS + N + D Sbjct: 321 PNGPGAEAPEEEEEAEPYMHRAGTLTSLESSHSVPSMSISASS-QSSSVNSLADASDNEE 379 Query: 390 EETEGAVDGLSEKVSKMHA*CSADDGSRHRISHFRQVHRM 271 EE E + E+ + +G SH +HR+ Sbjct: 380 EEEEEEEEEEEEEGPEAREMAMMQEGEHTVTSHSSIIHRL 419
>STAU2_MOUSE (Q8CJ67) Double-stranded RNA-binding protein Staufen homolog 2| Length = 570 Score = 29.6 bits (65), Expect = 9.4 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Frame = -3 Query: 675 SPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAPGVGQ---NG 505 SP + R RV G ++S ++M+ + +VSP A + NG Sbjct: 416 SPDVYQEMEASRHRV---TSGTTLSYLSPKDMNQPSSSFFSVSPSSTSSATVARELLMNG 472 Query: 504 LSPTSLSSRTYLKSASISASKCVVVNPNKQPEY 406 SPT+ LK +S S C V P+KQ EY Sbjct: 473 TSPTA--EAIGLKGSS-PTSPCSSVQPSKQLEY 502
>ARRC_RANCA (P51481) Arrestin-C (Cone arrestin)| Length = 389 Score = 29.6 bits (65), Expect = 9.4 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Frame = +3 Query: 24 ECSTAKQDSVQMSCSVRYNHA*MICVGTNPGVTSVILSVKIHQPMQGNSSC---VQQRCL 194 E K+ V M+C+ RY M +G + + S ++H P+ G +Q++ Sbjct: 45 EYQKEKKVFVMMTCAFRYGRDDMELIGLSFRKDIYVQSCQVHPPLPGEKKALTPLQEKLK 104 Query: 195 A--GSHTR*TISNLYAVLP*DRTALLSASGVPDGNEKCGADF 314 A G ++ N+ LP ++ G D + CG DF Sbjct: 105 AKLGGNSFPFSFNMATNLP---CSVTLQPGPEDSGKACGVDF 143
>MYCD_MOUSE (Q8VIM5) Myocardin (SRF cofactor protein) (Basic SAP coiled-coil| transcription activator 2) Length = 935 Score = 29.6 bits (65), Expect = 9.4 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Frame = -3 Query: 702 EHYSKGERGSPLQRKHASLPRQRVGASNDGNNEQHISDQEMSAEPDAHGAVSPQKPQDAP 523 +H G SP +H SLP N + A+ + HG SP Q Sbjct: 634 QHSPLGGLKSP---QHISLP--------PSPNNHYFLASSSGAQRENHGVSSPSSSQGCA 682 Query: 522 GVGQNGLSPTSLSSRTY-LKSASISASKCVVVNPNKQPEYDDAISEE 385 + GL + T+ + S + S S V + + P Y+DA+ ++ Sbjct: 683 QM--TGLQSSDKVGPTFSIPSPTFSKSSSAVSDITQPPSYEDAVKQQ 727
>BCL6_MOUSE (P41183) B-cell lymphoma 6 protein homolog| Length = 707 Score = 29.6 bits (65), Expect = 9.4 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 16/129 (12%) Frame = -1 Query: 455 LVLPSVSLSTRINSQSMTMRSLRKRKGPS--TDYPRRSPRCMPSAAP-----MTEVGTAF 297 LV S++ S R +S+S + + K S + P+ + C+ +A P M E + + Sbjct: 450 LVNRSLAGSPRSSSESHSPLYMHPPKCTSCGSQSPQHTEMCLHTAGPTFPEEMGETQSEY 509 Query: 296 LISVRYTG--------C**QSSAVLGKHCIQV-GDCLASV*SCQASLLHAGTVALHGLMY 144 S G C A L +H +Q D CQAS + G +A H ++ Sbjct: 510 SDSSCENGTFFCNECDCRFSEEASLKRHTLQTHSDKPYKCDRCQASFRYKGNLASHKTVH 569 Query: 143 FYTQDYRCN 117 + YRCN Sbjct: 570 TGEKPYRCN 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,473,259 Number of Sequences: 219361 Number of extensions: 2177860 Number of successful extensions: 6488 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6475 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)